TCONS_00060401 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060401
Unique Name	TCONS_00060401
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1492

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_341:335057..342611+

transcript sequence

>TCONS_00060401 ID=TCONS_00060401|Name=TCONS_00060401|organism=Clytia hemisphaerica|type=transcript|length=1492bp
CACCCGATCAAAAGTGGGTGTTATTATCAAATAATACCAAGAGAcTTTAT
AGACATTCTTCTTATGCTGATTACTATATTCAAGATTTACGTTCAAATGC
TGAGCGCAATAGCAGTAAACCTCGAACGATAAAGCTTGAAACACCAGATA
AAGATAAAACTGAGCAGATTCGATATGTTGGCTGGGCCAAGAAAGATAAT
GCTCTGGTGTTTGTTTACAAATGCAATATTTATTACGTTCCCGCCGTCCT
GGAGATTACAGATCGATATTATCAACTGACAGACAATGGAATACCAAAGA
AGGTTTTTAATGGTGTTCCCGACTGGGTATATGAAGAGGAGATCATCGCT
TCAACGCACGCCATCGAAGTCTCCAAAGATGGCCGATACATCGCTTTTGT
TACATTCAATGCTACGGATGTTCCCTTCTTCAAGTTCCCCGTTTACGGTT
CCGTCGATCATCAGTACACAACTATTGATAAAATTGCTTACCCAAAGGCT
GGTTACCCCAACCCCACTATCAAGTTCAGTGTCATTGACATGGAAGAAGT
TTTGAAAAGCAAAAGCAGAGAATCTAAACGATCACATCCAAAACCACCTG
CGAAAATCTCCAAAACTGATTATTATTACGCCGTCATGAAATGGACGCCT
GGGAACGAATTATTCGTCCAATGGATGAACCGCGCTCAAAACGAGACTGT
TTGTATCACATATCCTCCTGATAAAGACGAGGGAAAAACTGTCGAAGAGC
ATTCAACGCTGAACGGGTGGATTGACGATGATtATGTGAAACCGAAATTT
TCACCAGACGGCAGCTATTACATCACAATGCTACCCATTGACGACAATCG
ACATTTGGCGAAAGTCTCCCTGACCAGTGAGaCACCATCCATAGATTATT
TGACTCGTGGGAAATATTGGGTTCAAGATATCAACTGTTATAACAGTAAA
GACAATTTAGTATACTTTCGAAGCACAGAACAATCACCGCGCTATCGCCA
GGTTTACAGTATCGATGTCAACACAAAGGAAAAGAAATGTCTCACTTGTG
GACTGATCAAAGACCCTACCACCAAACAAGAGTGTACGTACCACTACCCA
GTGTTCAGCAAACAATGTAGCTGGGTTTCATTGATGTGCCAAGGTCCATT
CCTCCCTACTGTTCAAATGTTCGACGTCAAAAACGAGAAAGTCTATCAAA
TGTTGGCGTCTAATGATAAATCTCGTGAGCAACTGAAAGAGAAGGACCTA
CCAGTCAACGTATATTACACCATTAAATCTGATGGATACGATATCCCAGT
GAAAGAAACACGACCTCCGACCTTTGATGTCAATAAGAAATATGCTGTCT
TATTTGATGTCTATGGTGGCCCAAATACTCAAAAGGTGACAGACCAATAC
GGGATAGGCTTTAACGATTTTTTCGTTCTTGGACATGACATAATCGTGGT
CGCTTTCGATGCGCGTGGAACTGGCTTTCTTGGGTATAAGTA

Run BLAST on NCBI

transcript from alignment at scaffold_341:335057..342611+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060401 ID=TCONS_00060401|Name=TCONS_00060401|organism=Clytia hemisphaerica|type=transcript|length=7555bp|location=Sequence derived from alignment at scaffold_341:335057..342611+ (Clytia hemisphaerica)
CACCCGATCAAAAGTGGGTGTTATTATCAAATAATACCAAGAGAGTAAGT
GATgttattttctttcttatttaaatattttgtttccaGAAAAAGATCAG
AActacatgcttttttttataagaatacactttataagaatatccgtgat
gaaaatggccaaaaattaagaatatggtaagaatttcaccatcatggaat
ttagcaactgaacgaacctaagaatgccatttttaatgcattttaacctg
tagattgccaatttcgatcttaacctaagtaagaataccgtaagaatatt
tctggatgattttcgccaaaatgtcaagaatatccatgatgaaataaaaa
aacaccattcttataaaaaaaagcgtgtagatgaTAAATTTGAATGTAAT
GTTTGATATTACAAAGATGACTTTGGGGCTCGAGCAATAGCTTGGGTTTT
GGTTTGCTTGGAGCAAAAATCATGCTCATGTTTTCATAGAACTACATAAA
AAATTATTAGGGTTCTTTTTCATTTGACAAATATAGTATAGAATTTGTTT
AAAATGCATGCTGGATACTTATGAGAATTCTTTATTAAAGTGACTTTTTA
TCATGTTTAtcaattctttttcattttttcatagcTTTATAGACATTCTT
CTTATGCTGATTACTATATTCAAGATTTACGTTCAAATGCTGAGCGCAAT
AGCAGGTAAAGAAATTCTAAGTCTTTTTTGTGATATCACAATTCATCAAG
TTACCAAAAGGGTGAAGCATTTCAAATACTGGAATCTGGTTGACCTTTTT
TCAGAAATGTATTTTGGGTTTAGCAAAATGATTTTAATGCTTCATCCAAA
TTATTAAGAGCTCTTTGAATTTGGTTCCACGAgagttattatattatttt
aaaaacttcgTTTCAGTAAACCTCGAACGATAAAGCTTGAAACACCAGAT
AAAGATAAAACTGAGCAGATTCGATATGTTGGCTGGGCCAAGAAAGATAA
TGCTCTGGTAAGACTCGTCAAGATTGATTTTTTATACCAGCTTCTTCTGA
AAgagttttttttatgtttaaacaACGAGGCCCGTCCGGATACCAAAGGA
ACAATTTTTGAACATACACAATGTtgtagatttttaaaattttgtgaata
tgatacattttggaaagttttgttttcactgatttcaaaagtaaaatgta
acttcttttgaaaaaaaccttaaaaactaTTTCTTGACTTATATTTAGGT
GTTTGTTTACAAATGCAATATTTATTACGTTCCCGCCGTCCTGGAGATTA
CAGATCGATATTATCAACTGACAGACAATGGAATACCAAAGAAGGTTTTT
AATGGTGTTCCCGACTGGGTATATGAAGGTATAAAAATCTAATCATTCAA
ACCAAGAAATTCCTTGATTTAACAAAATTCTCAAACTTTCCCAAATGTTG
TATGTAACTTCCCATCAGTGACCATTTCTTTAATATGATGACAACAAATT
TCAAGTTACGTAAACAAAAGTTATAATAAATCATACCTACTCACTATTCT
GAATCACAACAGAAAAGGCCTTCAAAATTTCAGACTGTTACCAAAGATTG
AACAAGACAGAAATATACTCTCTCTCACAACAAACTTCTCTCACAtaaat
tttgttcattcttcatcttcttcttctttcaatTAATTTTACTGATCATA
AATGTTTGATAACCCTTTTTAGGTTTTCCATTtgttctctttttgttttt
gtttttatctttatttttgatggaatcagtttgaaattaaaaacacaTGT
CATTTTTCGAAAAGAATTTACTGTTAGcaccaatattttttaagtgttTC
ATAATAATTCGAATTCAATTTTAGTATTAAGAGATTTCAATTCAATCGTT
AAACACACAGCCTTTTTTGGTCTACACCAGGCAGGAGACAGTTCCAGAGT
TTCAAGCTCGAAaggaaggaagatatgacgtagcctataaTCTTTTTCAA
TACGTTGATTTATAAATTATTAGGACTTTTCTAAGTACCAGATTCTGATC
TCATCAATTTCATCTTTATAATCTgcttttttaatatttcaattcgACCA
TCTTTCCAGTTGGAACATTTGTGACCACAAGGAAGCCATAATATAACCAT
CACCACCACGCTAATAATTCAAATTAATTGATGGTCTACTCTTCGCTTCC
TCGTTCATACTTCTCTTTTAATAGTTTGCTTCAAAATTTGGCTTTAATGA
GCAGACCGATTTAACTACcaacttattaaaaaaaagttgctgACATATTT
TTCAATGTGTGGCTACATTTCTCTCTGATTATTTTCTCATctaaaatgaa
gaataaaaatCTTCTATGAAAGGCTAAAAATAATGAAGAACGTTACCCAA
CTTTTTCATGCAcaatttctgacatttttttataaattttgtggTTAAAC
CGCCAGTGAGAATTCTGAACGCAGTGTGGACAAGATCTAGATAAGGAAGA
AATGCATATTCCACTTTGCTACCAAAATGAGTGCATATATCGTGACAGAA
ATTCTCGTTTCTTGTCCAAACTCtaactatttataaaacgaTGAATAAAT
CAACATTCGAATCCCACTAATTCGCTTTTATCAACAGAGGAGATCATCGC
TTCAACGCACGCCATCGAAGTCTCCAAAGATGGCCGATACATCGCTTTTG
TTACATTCAATGCTACGGATGTTCCCTTCTTCAAGTTCCCCGTTTACGGT
TCCGTCGATCATCAGTACACAACTATTGATAAAATTGCTTACCCAAAGGT
ATAGTAATGTGTTCCTCTGGTGATCCCTTTATTACATAGTCTCCTAAATG
ACTATCAGTTCGATTTTATCCCTTTGAATGGAAGAGCTGAGTTTGGAATT
CAATTTAACTCTGCGCCGACTCCTCCTGTCTTTTTAATATCATACAGTAG
TTGGCTTTTATATTATTGACCTCGTTGAATCTTTTTTAGTATACTTGTGG
TGATCTCAAGTCTGTCAAGCAAATTACTATCAGAAATGTCAACTCAAAAT
AGATATATAACTTTTTTACCCGTTCCAAAAATTATTAATGAAATCAGAAT
TGACATGGATGTCAGAATTATgtaacttttttcattttccccatTAGGCT
GGTTACCCCAACCCCACTATCAAGTTCAGTGTCATTGACATGGAAGAAGT
TTTGAAAAGCAAAAGCAGAGAATCTAAACGATCACATCCAAAACCACCTG
CGAAAATCTCCAAAACGTAATTTTGTAGCTAATATTCTtaaaaagaatgt
tttagttttttgagTCTGCTTGAAATCCTTTAGAGCTTATTATACCATTT
TTGCCATCCTTCCAAATCACTTTctataataaaaaacatgatTTCTTTGA
GCGACAGTACAACCGTTAGAAAGATTTTGGCTAAAATTGAGTGACCTAAA
CTGGAGAGGCAAATTAAAGAAATTAGGAATTCTAGTCGTCTTAGAAATAA
AGTTTCTTAAGGATTTTATGTAATGAACTAATCAAAGCTAATTTTGGACT
ATATTTTTCAGTGATTATTATTACGCCGTCATGAAATGGACGCCTGGGAA
CGAATTATTCGTCCAATGGATGAACCGCGCTCAAAACGAGACTGTTTGTA
TCACATATCCTCCTGATAAAGACGAGGGAAAAACTGTAAGACTTGTCGTA
TACaattgatgctctctaattcgattttcaaggggaattacATTTTTATC
GAATAAAGGAGCGTATCGAAACGAATGGTAtaacgtcgtttatgagagtt
tcatGTTGATGGTAACTTTCAATATATCGAATAATGAAGCGCATCGAATa
ctagaacgtcgaattagagagcgttaaCTATAATTTGTAATGCGTGCAAT
TTTAATATTAAAACCTCTATTTTTTCCACAGGCGACACAAATCGATTTTC
CGATGAAAATACAAGGAAAAGTATTCcagacttgtttttttttctatgag
TTTCGGTGTTGTCTGAAGatgtttaattttgttttctttatgtACAGGTC
GAAGAGCATTCAACGCTGAACGGGTGGATTGACGATGATGTATGAtggct
tcattttttcttctccttctttaaAACAGTGTTAAAAGTATTTCCGTACC
TGTGAAATTTAAAGGCTTTTCCGTTTCAAGATTCTGTATAATgcaccaaa
atttcaaggatATCCTGTCCTGTCCTGActtgctgtgtaaaatccatttt
gaccaaaataaCATTGACCACTGTTAAAAGGGGATTTTCTAAACCTCTCT
CGTTCGTATTCTGCTAACGTTATAAAGttcaataattttcctttttagtA
TGTGAAACCGAAATTTTCACCAGACGGCAGCTATTACATCACAATGCTAC
CCATTGACGACAATCGACATTTGGCGAAAGTCTCCCTGACCAGTGAGGTA
TGATATAACTGTAtgatttgtaaagtttttattgaTTCGTAGGAAATTTT
ATCAATCCACAAttagtgccataacatattggcacttttggctaatttac
catttttcgaaaattgaagttcgagagagaatgtcaatttcgggccttca
acttgatttcgatctgggagagagttattggtttctaggctatatttcaa
gccctactggaccatttttgaactttttgatccTCAGTCTagatcttaag
tctagcgttaaaactcagagttacgACTCTAcacttcgaacctactttag
agcacttacaaatcgattgtggtttcaaaacaccccggtggatttccttt
ttgtgccaagtttTTCGTCACCGATTGTAAATTCTGATTAAAAGGTTCAT
GACCGACTCATGTCCATGATATCTTGAGATATGTTCCGGCCATTTgcagt
tgaaattaattaaccaattcatttttctttagaCACCATCCATAGATTAT
TTGACTCGTGGGAAATATTGGGTTCAAGATATCAACTGTTATAACAGTAA
AGACAATTTAGTGTAAGTCAGAAGTTTCGTCAACGAATTGTTGTCAGAAA
GTCGACGCGTGGTTTTAAAACAGATTGCACTCCTAGGATAAAGAGTATCC
Ttgccattgagtttgaagccccgaagggctagagatgaatcttcaacctt
tcccgAGCAGGAAAAAGGGAAACCTTGAGATTTGCACCGCATTAAGGATG
ACGCATTGAACCTagcgctttctttgttttcaagtgGCAATTTTTCCAAT
GGGTCCACGTGGGTCAAAGCGTTGAGCGGttcaaaaaaaagttctttACA
GGTATTGTATGTGCTCCATAATTTGATTGTATGTTCTTTCGTGGTGTCAA
TTTCAATCTTTGAATCCACACTTCAGACACCACATCATTTTCGACCATTT
CTTAAGGAGGGCTGCTTGGATATTTTTCTAGATACTTTCGAAGCACAGAA
CAATCACCGCGCTATCGCCAGGTTTACAGTATCGATGTCAACACAAAGGA
AAAGAAATGTCTCACTTGTGGACTGATCAAAGGTACTAcacatttttatc
attattaAAAGCTCGCATTTCAATAAACGTGGTAAATGCTGCAGTTTGGT
TTTAGAAAGAATTTCTAATCtgataaatcaattttgaaTCTTGCCGAAGA
AACTTTTGCCGAGGAATGTTTTGATCCATAAATAACGAGTAAAAGAGCCG
caacacgctttttcttttataacagtttataagaatattcatgatgaatt
ttgcccaaaagttaagaatatgctaagaatatcatcatcaCGGAATTAGG
CAACTGAGCCTAAGAATGCTATTTTTAGGGCATTTTGCTCGTAAATTGCT
CTAAAATTCCCCAGCCATGCTAAGAGCTTTCacagaaatgcaaaatttcT
GCTCATATTAGATTTAGGATGAGTTTGGATCCAAACTGCAAGAATATTAT
AAgataatttttcccaaaaagttaagaacgacAGAACATTAGTTCATTCC
CCTTCAGGAGTAGACAGATTTTGGCTAGCTAGACACTTTTTTAAACAACA
AATTTTCTTTGTGAAAAATTCCTAAGCcgtttttcataatttattgtgag
atttgattaaaaattatCCGTTACTTGAAATAttgtattttcacttttaa
cattttctttgattcTGTCGCTCGGCAAAACTATCGTTCTCAGTccggaa
aatattttattctcattttaactttttttaccgAAACTCgcttattattt
ttcaaaatgaatttctgaaaatatctcgatacaaaaaatatacaatagcC
ATAACACCTAAAAATCTGTAAATAGTTTACTTTATATGGAGAGATCaaca
acccagctggcacacaacgttgtttcaacgttaacttaacgttatatgga
cgttgtgaacgttagataaacgttgaaacaacgttgtgtgccagctggga
acccTCGAAAAGTCTACCGTGCgtgaaaaattcaaataacgGTCTTTTTT
AAGGTTTCAAACTTTTAGGCTTTTTCAATCCAGCTCGTGATTTTAAAACG
AAAAACCATCTAACATGCATAAACACCCGAAAATGTTGCAGGGACTTGCA
AAAATTTGCTTTCCAACTATGGGAATGGTCCTTTTGCTAATCCGTCCCTT
AAAGAATCTTTAGAATTTCTATAATCACCCTTCGGGTTTTCGGCACTTGG
GATGAATAATAAATCTTCCTGATTTTTTCGTGCATTTTTGTTGATTTAGT
CCCTGTAGCTATCAATGTGTTTTTCGCATAAGTAATTTATTTCTGTTTTA
TTTTGGGATCCTTAGCCTAGTTGTTAAACAAACCCTTATTTTTATAGACC
CTACCACCAAACAAGAGTGTACGTACCACTACCCAGTGTTCAGCAAACAA
TGTAGCTGGGTTTCATTGATGTGCCAAGGTCCATTCCTCCCTACTGTTCA
AATGTTCGACGTCAAAAACGAGAAAGTCTATCAAATGTTGGCGTCTAATG
ATAAATCTCGTGAGCAACTGAAAGAGAAGGACCTACCAGTCAACGTATAT
TACACCATTAAATCTGATGGATACGATATCCCAGTGAAAGAAACACGACC
TCCGACCTTTGATGTCAATAAGAAATATGCTGTCTTATTTGATGTCTATG
GTGGCCCAAATACTCAAAAGGTATAACATTTAGTATCTTAACAAGATTCG
AGTAGGCATTTCTTAGTTATTTCTGTCCAAAGTTGATCTATAAGACTTGA
CTTTTTATGACAACAGAACCTTCCTTTCTGCCCAATATACCTCATCCCCA
TGCAGTAAATGGTTTTTTCACATGAACCAATCTTTCATTTCATTCTAGCT
CCTTATTTACCTAACCCAAATACTTCCCACTCTTTAACCTTTCCCTCCCC
CAAACTCGAGCACCCTTAACCTCTCCCTTTTCAAACCCTCAACTTTAGGT
GACAGACCAATACGGGATAGGCTTTAACGATTTTTTCGTTCTTGGACATG
ACATAATCGTGGTCGCTTTCGATGCGCGTGGAACTGGCTTTCTTGGGTAT
AAGTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037993	XLOC_037993	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_341	supercontig	scaffold_341:335057..342611 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.9226	7.92487	7.74366	7.23819	72.8284	59.1071	59.3357	58.6493	73.6299	75.5221	44.8904	60.9725	26.4366	26.3595	24.3816	24.8019	20.9356	23.0088	23.9396	38.601	10.2353	9.73709	6.30119	10.5082	32.2116	31.5155	9.62713	6.21382	4.73804	5.4627

Blast

[Close]

BLAST of TCONS_00060401 vs. Swiss-Prot (Human)
Match: DPP6 (Dipeptidyl aminopeptidase-like protein 6 OS=Homo sapiens GN=DPP6 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 1.477e-68
Identity = 152/506 (30.04%), Postives = 247/506 (48.81%), Query Frame = 3

Query:    3 PDQKWVLLSNNTKRLYRHSSYADYYIQDLRSNAERNSSKPRTIKLETPDKDKTEQIRYVGWAKKDNALVFVYKCNIYYVPAVLEITDRYYQLTDNGIPKKVFNGVPDWVYEEEIIASTHAIEVSKDGRYIAFVTFNATDVPFFKFPVY-GSVDHQYTTIDKIAYPKAGYPNPTIKFSVIDMEEVLKSKSRESKRSHPKPPAKISKTDYYYAVMKWTPGNELFVQWMNRAQNETVCITYPPDKDEGKTVEEHS-TLNGWIDDDYVKPKFSPDGS--YYITMLPIDDNRHLAKVSLTSETPS-----IDYLTRGKYWVQDINCYNSKDNLVYFRSTEQSPRYRQVYSID-VNTKEKKCLTCGLIKDPTTKQECTYHYPVFSKQCSWVSLMCQGPFLPTVQMFDVKNEKVYQMLASNDKSREQLKEKDLPVNVYYTIKSDGYDIPVKETRPPTFDVNKKYAVLFDVYGGPNTQKVTDQYGIGFNDFFVLGHDIIVVAFDARGTGFLGYK 1490
            PD+++ L S N + +Y+HS Y  YY+     + +  S  P  +           +++Y GW  K   L+F+++ NIYY   V +   R       G+   ++NG+ DW+YEEEI+ +  A   S DG  +A+   N + VP  + P Y GS+   Y T+    YPKAG  NP+I   VI +       +  +      PP      +YY  ++KW    ++ V W+NRAQN  V I    D   G   ++H      W+     +P FS DG   ++I  +P         ++++S  P+     I  +T G + V  I  Y+ K N +YF STE  PR RQ+YS + V    ++CL+C L+++      CTY    FS    +  L C+GP +P V + +  ++K    L +N+  ++ + ++ +P   Y  I+ D Y++P++  +P TF     Y +L  V G P +Q V +++ + +    V  H  +VV  D RG+GF G K
Sbjct:  196 PDREYALFSYNVEPIYQHS-YTGYYVLSKIPHGDPQSLDPPEVS--------NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGV---IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI---YPTVKPYHYPKAGSENPSISLHVIGL-------NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN--VSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN------CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTK 671

The following BLAST results are available for this feature:

BLAST of TCONS_00060401 vs. Swiss-Prot (Human)

BLAST of TCONS_00060401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPP6	1.477e-68	30.04	Dipeptidyl aminopeptidase-like protein 6 OS=Homo s...	[more]

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TCONS_00060401 (transcript) - C. hemisphaerica