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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060397 ID=TCONS_00060397|Name=TCONS_00060397|organism=Clytia hemisphaerica|type=transcript|length=4355bpRun BLAST on NCBI protein sequence of TCONS_00060397-protein >TCONS_00060397-protein ID=TCONS_00060397-protein|Name=TCONS_00060397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp MTSKGYRKLSIEEKEPAEKGPFLQENTDKDSQNDKSKTKKFSRRYHILFGRun BLAST on NCBI transcript from alignment at scaffold_341:328192..349893+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060397 ID=TCONS_00060397|Name=TCONS_00060397|organism=Clytia hemisphaerica|type=transcript|length=21702bp|location=Sequence derived from alignment at scaffold_341:328192..349893+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_341:328192..349893+ >TCONS_00060397 ID=TCONS_00060397|Name=TCONS_00060397|organism=Clytia hemisphaerica|type=CDS|length=33405bp|location=Sequence derived from alignment at scaffold_341:328192..349893+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060397 vs. Swiss-Prot (Human)
Match: SEPR (Prolyl endopeptidase FAP OS=Homo sapiens GN=FAP PE=1 SV=5) HSP 1 Score: 366.311 bits (939), Expect = 4.050e-109 Identity = 244/793 (30.77%), Postives = 402/793 (50.69%), Query Frame = 3
Query: 327 ILFGLFTVMMFGVGLTVGLVIRQKTDWLTGTSIKVSTGVERLKRADNKFAIEDVMGGKYSYSTYGLTWVSDDSYLH--SEGSVLKYNMSSMATETIIDATDNYRHSYGDYELSPDQKWVLLSNNTKRLYRHSSYADYYIQDLRSNAE--RNSSKPRTIKLETPDKDKTEQIRYVGWAKKDNALVFVYKCNIYYVPAVLEITDRYYQLTDNGIPKKVFNGVPDWVYEEEIIASTHAIEVSKDGRYIAFVTFNATDVPFFKFPVYGSVDHQYTTIDKIAYPKAGYPNPTIKFSVIDMEEVLKSKSRESKRSHPKPPAKISKTDYYYAVMKWTPGNELFVQWMNRAQNETVCITYPPDKD----EGKTVEEH--STLNGWIDDDYVK-PKFSPDG-SYYITMLPIDDNRHLAKVSLTSETPSIDYLTRGKYWVQDINCYNSKDNLVYFRSTE--QSPRYRQVYSIDVNT--KEKKCLTCGLIKDPTTKQECTYHYPVFSKQCSWVSLMCQGPFLPTVQMFDVKNEKVYQMLASNDKSREQLKEKDLPVNVYYTIKSDGYDIPVKETRPPTFDVNKKYAVLFDVYGGPNTQKVTDQYGIGFNDFFVLGHDIIVVAFDARGTGFLGYKC*ICFRCTSMNTYALISIFWSCKLMLE---------ALVTMVMSKLXITLAMSNNT--INTAVSVAPVTDWRYYDTVYSERYMGLPTVEDNLAGYQSTNIMSKAEKFKGKNFLLMHGTADDNVHFQNSAQLSSALIKNKVSFKTQYFPDRDHGIE--SDGFIYYKIAEFI 2618
I+FG+ T + + L + +V+R +V E RA ++D++ G +SY T+ W+S YLH ++ +++ YN+ + + TI+ + +Y LSPD+++V L ++ +L+R+S A YYI DL SN E R + PR I+ Y+ W+ + L +VY+ NIY D +Q+T NG K+FNG+PDWVYEEE++A+ +A+ S +G+++A+ FN TD+P + YG D QY I YPKAG NP ++ +ID +E PA I+ +DYY++ + W + +QW+ R QN +V +D + +EH + GW +V P FS D SYY D +H+ + T E +T GK+ + IN + + +++ S E + P R +Y I + + KKC+TC L K+ C Y+ FS + +L+C GP +P + D + ++ ++L N + LK LP ++ D + K PP FD +KKY +L VYGGP +Q V + + + + +++ D RGT F G K + + Y + + + +E A+ +LA+++ T ++VAPV+ W YY +VY+ER+MGLPT +DNL Y+++ +M++AE F+ ++LL+HGTADDNVHFQNSAQ++ AL+ +V F+ ++ D++HG+ S +Y + F+
Sbjct: 7 IVFGVATSAVLAL-LVMCIVLRPS---------RVHNSEENTMRA---LTLKDILNGTFSYKTFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL-SNGEFVRGNELPRPIQ-------------YLCWSPVGSKLAYVYQNNIYLKQ---RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG--DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV-----PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI--QITSGKW--EAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHL-----RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKL-LYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLSGLSTNHLYTHMTHFL 752 The following BLAST results are available for this feature:
BLAST of TCONS_00060397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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