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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060369 ID=TCONS_00060369|Name=TCONS_00060369|organism=Clytia hemisphaerica|type=transcript|length=1256bp
TTTTGAGACATAATTTCTTAGCTTTATGATGACTTATTGTAGCACATGTG
CCAACCACGTTCACTTTTGATCATCTCTTAAATAAATTGACATAAACTTT
CCAGCTTTTATACGGTTGTCAATAAGGATATGTATTTATTTTGGATTAAA
CGTATAAAATCGTCCCTTCTTCGAACATTTTGAGTCATAAGGAAATTTGT
AAACTAGTTGTGTGAATAAACATCGGAAGAGTTTTGCTTGTTGAAGGATT
TCACATTTACCATCATCGTTTCTTGTCAAAACGTCTTATAGTTAGTTAAT
GacatgattttgaaatttcaatcgGTTTGGATGAGGAGTTAGAGTTTTAA
TGGCGTACAACAAGTTCATGTACTGGATGTGTTTATACCTTAACATTATC
TTGAGTGATTGTTGGATACATTACACTTTTCTTCAAACCAGTGGTCGATA
TTTAACGGGACTACTGACGAATAGTTTCTCTTCAGCTCATATAACGTCCA
TGCATATCGTGGCAGTCTCAAATATATATGTTACCTCTCATCCGTCAGTG
TGCTAAATAATGATGAACGATTTTAAACTTTAACGCATGGTTCCATTTAT
GATTATTAGTACAATACAACTATCAGTCATTTTACCGAAAGCTATATTAA
AGGGATTGGGTTGAGTTTATCAGGGTTGAATGACGTCACATCCCTGAAGC
CATTGCGGCGTGACCGCAAGGTTATGCCACTATCCTTATGATGTGGATTT
GTGATACTTGATTTGTTTGCCTCTTATTATTCGTTTTTTAACTAATTTAG
TCttataatatttatatttattctaATGTATATCTCTTGgtccaaatttt
acaaattgcaTCGACACACTCACAGATAGAGACGTTTCTGACGTCATTCG
AACCCAATCCTGCCGCAGTGGCGTAAGGGTTAATTAGTGTTAACTTAAAG
ATTTTGTTCTGTTTTCCCTCTTTTAGTTTATAGGTATTGAAACAATGACA
GATTTCCACGATTACTTTTACAAGATAGTATTGATCGGAGATTCAGCAGT
GGGAAAATCGTGTCTTCTTTCTCGATTCACTTACAATGAATTCAATAGTG
AGTCGAAGAGTACGATCGGAGTGGATTTTGCAACGAAGAGCGTGATCATT
GATGATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTACATCATTTTTT
TTACGTTATACTGTTGATTCAACATTCAACATAAAGACACTTATAACAGA
TTTGAA Run BLAST on NCBI transcript from alignment at scaffold_341:167349..168604+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060369 ID=TCONS_00060369|Name=TCONS_00060369|organism=Clytia hemisphaerica|type=transcript|length=1256bp|location=Sequence derived from alignment at scaffold_341:167349..168604+ (Clytia hemisphaerica)
TTTTGAGACATAATTTCTTAGCTTTATGATGACTTATTGTAGCACATGTG
CCAACCACGTTCACTTTTGATCATCTCTTAAATAAATTGACATAAACTTT
CCAGCTTTTATACGGTTGTCAATAAGGATATGTATTTATTTTGGATTAAA
CGTATAAAATCGTCCCTTCTTCGAACATTTTGAGTCATAAGGAAATTTGT
AAACTAGTTGTGTGAATAAACATCGGAAGAGTTTTGCTTGTTGAAGGATT
TCACATTTACCATCATCGTTTCTTGTCAAAACGTCTTATAGTTAGTTAAT
GacatgattttgaaatttcaatcgGTTTGGATGAGGAGTTAGAGTTTTAA
TGGCGTACAACAAGTTCATGTACTGGATGTGTTTATACCTTAACATTATC
TTGAGTGATTGTTGGATACATTACACTTTTCTTCAAACCAGTGGTCGATA
TTTAACGGGACTACTGACGAATAGTTTCTCTTCAGCTCATATAACGTCCA
TGCATATCGTGGCAGTCTCAAATATATATGTTACCTCTCATCCGTCAGTG
TGCTAAATAATGATGAACGATTTTAAACTTTAACGCATGGTTCCATTTAT
GATTATTAGTACAATACAACTATCAGTCATTTTACCGAAAGCTATATTAA
AGGGATTGGGTTGAGTTTATCAGGGTTGAATGACGTCACATCCCTGAAGC
CATTGCGGCGTGACCGCAAGGTTATGCCACTATCCTTATGATGTGGATTT
GTGATACTTGATTTGTTTGCCTCTTATTATTCGTTTTTTAACTAATTTAG
TCttataatatttatatttattctaATGTATATCTCTTGgtccaaatttt
acaaattgcaTCGACACACTCACAGATAGAGACGTTTCTGACGTCATTCG
AACCCAATCCTGCCGCAGTGGCGTAAGGGTTAATTAGTGTTAACTTAAAG
ATTTTGTTCTGTTTTCCCTCTTTTAGTTTATAGGTATTGAAACAATGACA
GATTTCCACGATTACTTTTACAAGATAGTATTGATCGGAGATTCAGCAGT
GGGAAAATCGTGTCTTCTTTCTCGATTCACTTACAATGAATTCAATAGTG
AGTCGAAGAGTACGATCGGAGTGGATTTTGCAACGAAGAGCGTGATCATT
GATGATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTACATCATTTTTT
TTACGTTATACTGTTGATTCAACATTCAACATAAAGACACTTATAACAGA
TTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060369-exon-scaffold_341-1491911889:167349..168604 | TCONS_00060369-exon-scaffold_341-1491911889:167349..168604 | Clytia hemisphaerica | exon |
| TCONS_00060369-exon-scaffold_341-1510915933:167349..168604 | TCONS_00060369-exon-scaffold_341-1510915933:167349..168604 | Clytia hemisphaerica | exon |
| TCONS_00060369-exon-scaffold_341-1575043694:167349..168604 | TCONS_00060369-exon-scaffold_341-1575043694:167349..168604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:167349..168604 + |
Blast
BLAST of TCONS_00060369 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 5.833e-16 Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query: 992 TMTDFHDYFYKIVLIGDSAVGKSCLLSRFTYNEFNSESKSTIGVDFATKS 1141
T D +DY +K+VLIGDS VGKS LLSRFT NEFN ESKSTIGV+FAT+S
Sbjct: 3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 52
The following BLAST results are available for this feature:
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