TCONS_00060366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060366
Unique NameTCONS_00060366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060366 ID=TCONS_00060366|Name=TCONS_00060366|organism=Clytia hemisphaerica|type=transcript|length=360bp
GCTAACAAATCCtctcatcaaaaatcaaaaattcaatctTCATTCGATAG
ACATTTGGTACAAACAACATTGGCTTTGGATAGAAAGGTATTGAAACAAT
GACAGATTTCCACGATTACTTTTACAAGATAGTATTGATCGGAGATTCAG
CAGTGGGAAAATCGTGTCTTCTTTCTCGATTCACTTACAATGAATTCAAT
AGTGAGTCGAAGAGTACGATCGGAGTGGATTTTGCAACGAAGAGCGTGAT
CATTGATGATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTACATCATT
TTTTTTACGTTATACTGTTGATTCAACATTCAACATAAAGACACTTATAA
CAGATTTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_341:166839..168604+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060366 ID=TCONS_00060366|Name=TCONS_00060366|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at scaffold_341:166839..168604+ (Clytia hemisphaerica)
GCTAACAAATCCtctcatcaaaaatcaaaaattcaatctTCATTCGATAG
ACATTTGGTACAAACAACATTGGCTTTGGATAGAAAGGTATGGTTTATTC
TTTATAAAAGATAGCCAGTAATTCATCTCTTGTATTAGATGCTGATCCTT
TGGTAATGAATGTGATGGTTTGCTGGATTTAAAAAATCCAGATAAAGGTT
TAAAACTGTAGAAAAAAATGTCTCTGAGTAATGTACAGTGAAAACAAATA
CATTGTGAGTTTTCCACAAATTTggttaccttattacacgaatatttcta
gtcatttttttaacacgaattgaaagaTTTCGTGTTAAAAACCTCCTTAA
TTAGAACCAGCCGTGGTGTTCttgaaaaaagcaaataaaataattttttt
gtgtgttaatttcaaggccgttgaataatTGCCTAGTAACATTCGTGTAT
TGAGGGAGGAATTCGGTCCGGTTAGGTGGAAAAGGGAAATTACTAAAAAA
CCCAGATTTATTTTGAGACATAATTTCTTAGCTTTATGATGACTTATTGT
AGCACATGTGCCAACCACGTTCACTTTTGATCATCTCTTAAATAAATTGA
CATAAACTTTCCAGCTTTTATACGGTTGTCAATAAGGATATGTATTTATT
TTGGATTAAACGTATAAAATCGTCCCTTCTTCGAACATTTTGAGTCATAA
GGAAATTTGTAAACTAGTTGTGTGAATAAACATCGGAAGAGTTTTGCTTG
TTGAAGGATTTCACATTTACCATCATCGTTTCTTGTCAAAACGTCTTATA
GTTAGTTAATGacatgattttgaaatttcaatcgGTTTGGATGAGGAGTT
AGAGTTTTAATGGCGTACAACAAGTTCATGTACTGGATGTGTTTATACCT
TAACATTATCTTGAGTGATTGTTGGATACATTACACTTTTCTTCAAACCA
GTGGTCGATATTTAACGGGACTACTGACGAATAGTTTCTCTTCAGCTCAT
ATAACGTCCATGCATATCGTGGCAGTCTCAAATATATATGTTACCTCTCA
TCCGTCAGTGTGCTAAATAATGATGAACGATTTTAAACTTTAACGCATGG
TTCCATTTATGATTATTAGTACAATACAACTATCAGTCATTTTACCGAAA
GCTATATTAAAGGGATTGGGTTGAGTTTATCAGGGTTGAATGACGTCACA
TCCCTGAAGCCATTGCGGCGTGACCGCAAGGTTATGCCACTATCCTTATG
ATGTGGATTTGTGATACTTGATTTGTTTGCCTCTTATTATTCGTTTTTTA
ACTAATTTAGTCttataatatttatatttattctaATGTATATCTCTTGg
tccaaattttacaaattgcaTCGACACACTCACAGATAGAGACGTTTCTG
ACGTCATTCGAACCCAATCCTGCCGCAGTGGCGTAAGGGTTAATTAGTGT
TAACTTAAAGATTTTGTTCTGTTTTCCCTCTTTTAGTTTATAGGTATTGA
AACAATGACAGATTTCCACGATTACTTTTACAAGATAGTATTGATCGGAG
ATTCAGCAGTGGGAAAATCGTGTCTTCTTTCTCGATTCACTTACAATGAA
TTCAATAGTGAGTCGAAGAGTACGATCGGAGTGGATTTTGCAACGAAGAG
CGTGATCATTGATGATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTAC
ATCATTTTTTTTACGTTATACTGTTGATTCAACATTCAACATAAAGACAC
TTATAACAGATTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037987XLOC_037987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060366-exon-scaffold_341-1491911889:166839..166925TCONS_00060366-exon-scaffold_341-1491911889:166839..166925Clytia hemisphaericaexon
TCONS_00060366-exon-scaffold_341-1510915933:166839..166925TCONS_00060366-exon-scaffold_341-1510915933:166839..166925Clytia hemisphaericaexon
TCONS_00060366-exon-scaffold_341-1575043694:166839..166925TCONS_00060366-exon-scaffold_341-1575043694:166839..166925Clytia hemisphaericaexon
TCONS_00060366-exon-scaffold_341-1491911889:168332..168604TCONS_00060366-exon-scaffold_341-1491911889:168332..168604Clytia hemisphaericaexon
TCONS_00060366-exon-scaffold_341-1510915933:168332..168604TCONS_00060366-exon-scaffold_341-1510915933:168332..168604Clytia hemisphaericaexon
TCONS_00060366-exon-scaffold_341-1575043694:168332..168604TCONS_00060366-exon-scaffold_341-1575043694:168332..168604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:166839..168604 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.269943	0	0	0.157182	0	0	0	0	0	0	0	3.4064	3.56114	0	0	0.240001	0	0	4.20652	0.694349	1.15305	0	0	2.51976	0.670376	0.870748	0	0	0
Blast
[Close]
BLAST of TCONS_00060366 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 6.962e-18
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 3 
Query:   96 TMTDFHDYFYKIVLIGDSAVGKSCLLSRFTYNEFNSESKSTIGVDFATKS 245
            T  D +DY +K+VLIGDS VGKS LLSRFT NEFN ESKSTIGV+FAT+S
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 52
The following BLAST results are available for this feature:
BLAST of TCONS_00060366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11A6.962e-1874.00Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
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