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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060364 ID=TCONS_00060364|Name=TCONS_00060364|organism=Clytia hemisphaerica|type=transcript|length=1413bp
CTTagcttttgttcttataaaaagaagttgTGTACATGTGAGTACTTCAA
AAAGGTAATTTACCTAATAGATATCGAGAACAGTATATGGTGTAACTTGT
TGATAGGTTCATTGTTATGAAGAAATGctgtttgttttgttgttgttcgC
GATAAAATGTGATTTATCTATTTAAAAATGTACAGTAAGCTTTTCAATCT
AAattgagattttttagaaaCTGCTGCTAATATCAAGTCGGCAAGTCACC
GATCTTAGTTTTATCCTAAACCAATTTTCCAGTCAAATCAACTATTTTAA
ATATGAATGGAAGTAAAGAAAAAGATTATGATTTTATATACACCCTTGTC
GTTCTTGGTAATATTAACACCGGTAAAAGAATCGTCCATGCGAAGATCTG
TCACATGGAGAATGAATCTTGGCTTGGCGATTTTGTTGTATTAAACAAGC
AACTGGAAACTGGAGAAAGATTGAAATTGAGACTTAGTTTGGAAACTGGT
GGCGAACGTTGGACTCACAGATGTATTTCTGACAGAAAGTTTGCTACTTA
TCAAGGAATATTTCTTGTTTATAATTATTGTTTGAGAAAAACCTTCGACA
TATTGAATGATTGGCTGGACGCTATCAAGAAAAGGGGTCCAGAAGACAGT
ATAATTATGATTGTTGGTAACAAATATGTTCACTCAAATATGACAGATGA
AAGGGAAGTTACTTTTGAAGAAGGACATAAATTTGCATACCAGAATGGGC
TTTCATTTATGGAAATCACTGACCATAATCAGCAGACACTTGTTGACGAG
AAATTTATGGATCTGGTCTGTAATGTACACGAGAAACAAAAAGATAAACC
TATAGTCGAGAAACAGAGAACCCAAGAGACGCTATCTTCCAATCGCACAA
AATGCACTATCAtctgaattcaatgaatgtcCGTTTTTCACATTGTTCGA
TCGAAAGGCTGAGGAAATGTTACTCCTGACTACAAGGGAAGATGGCAGCT
TTAATTTTGATGTTGAGAAGAGCTTTATACGGCAAGTGTTTTTGCTGATC
CAATTCCTTTGGATTTCTTCCTGCAAACGCTCGGATAATTTTTATTTCTG
CTCTCCTTTGGACTTAAGTGACAATGAGAAACACGAACAAAAATTATGAA
ACAAGAACCATACATTTACCGCATAAAACATTCCTTTTCTATGATTTACT
TTTTTTGTACGCAGAAAAAAACCTCAATCGTGAGAGAGTTGTCAATGATT
TAGATCAACATAGCGAGATGTTTAAACTTTTTCACATCACTTGTTTTTGT
GAAGGATTCTAATTATTTTTGCTCGCTCTTGTAcatttatgaaaatatat
tgaattttgaaagaaagcTTCATTTCGATTTCCTTGGGACTGACTTGTTT
CTGCCTATCTGGC Run BLAST on NCBI transcript from alignment at scaffold_341:160735..162343+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060364 ID=TCONS_00060364|Name=TCONS_00060364|organism=Clytia hemisphaerica|type=transcript|length=1609bp|location=Sequence derived from alignment at scaffold_341:160735..162343+ (Clytia hemisphaerica)
CTTagcttttgttcttataaaaagaagttgTGTACATGTGAGTACTTCAA
AAAGGTAATTTACCTAATAGATATCGAGAACAGTATATGGTGTAACTTGT
TGATAGGTTCATTGTTATGAAGAAATGctgtttgttttgttgttgttcgC
GATAAAATGTGATTTATCTATTTAAAAATGTACAGTAAGCTTTTCAATCT
AAattgagattttttagaaaCTGCTGCTAATATCAAGTCGGCAAGTCACC
GATCTTAGTTTTATCCTAAACCAATTTTCCAGTCAAATCAACTATTTTAA
ATATGAATGGAAGTAAAGAAAAAGATTATGATTTTATATACACCCTTGTC
GTTCTTGGTAATATTAACACCGGTAAAAGAATCGTCCATGCGAAGATCTG
TCACATGGAGAATGAATCTTGGCTTGGCGATTTTGTTGTATTAAACAAGC
AACTGGAAACTGGAGAAAGATTGAAATTGAGAGTAAGTTAAATGTCTTTG
TTTTGTTTAGATTTCTTTCCTTATCATGCTTTGCTTGTATTCTAACAGCG
CCAATATCTTTACTCTTCCGTAGTACCTTGATCCAATCAAATGCCTTTGA
TAGCAGGTTGGACATCTCTTTTTTATGTTGGTAGATAAAGAGAAATTAAt
ttgatccttctctttaatTATATTATAGCTTAGTTTGGAAACTGGTGGCG
AACGTTGGACTCACAGATGTATTTCTGACAGAAAGTTTGCTACTTATCAA
GGAATATTTCTTGTTTATAATTATTGTTTGAGAAAAACCTTCGACATATT
GAATGATTGGCTGGACGCTATCAAGAAAAGGGGTCCAGAAGACAGTATAA
TTATGATTGTTGGTAACAAATATGTTCACTCAAATATGACAGATGAAAGG
GAAGTTACTTTTGAAGAAGGACATAAATTTGCATACCAGAATGGGCTTTC
ATTTATGGAAATCACTGACCATAATCAGCAGACACTTGTTGACGAGAAAT
TTATGGATCTGGTCTGTAATGTACACGAGAAACAAAAAGATAAACCTATA
GTCGAGAAACAGAGAACCCAAGAGACGCTATCTTCCAATCGCACAAAATG
CACTATCAtctgaattcaatgaatgtcCGTTTTTCACATTGTTCGATCGA
AAGGCTGAGGAAATGTTACTCCTGACTACAAGGGAAGATGGCAGCTTTAA
TTTTGATGTTGAGAAGAGCTTTATACGGCAAGTGTTTTTGCTGATCCAAT
TCCTTTGGATTTCTTCCTGCAAACGCTCGGATAATTTTTATTTCTGCTCT
CCTTTGGACTTAAGTGACAATGAGAAACACGAACAAAAATTATGAAACAA
GAACCATACATTTACCGCATAAAACATTCCTTTTCTATGATTTACTTTTT
TTGTACGCAGAAAAAAACCTCAATCGTGAGAGAGTTGTCAATGATTTAGA
TCAACATAGCGAGATGTTTAAACTTTTTCACATCACTTGTTTTTGTGAAG
GATTCTAATTATTTTTGCTCGCTCTTGTAcatttatgaaaatatattgaa
ttttgaaagaaagcTTCATTTCGATTTCCTTGGGACTGACTTGTTTCTGC
CTATCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060364-exon-scaffold_341-1491911889:160735..161216 | TCONS_00060364-exon-scaffold_341-1491911889:160735..161216 | Clytia hemisphaerica | exon |
| TCONS_00060364-exon-scaffold_341-1510915933:160735..161216 | TCONS_00060364-exon-scaffold_341-1510915933:160735..161216 | Clytia hemisphaerica | exon |
| TCONS_00060364-exon-scaffold_341-1575043694:160735..161216 | TCONS_00060364-exon-scaffold_341-1575043694:160735..161216 | Clytia hemisphaerica | exon |
| TCONS_00060364-exon-scaffold_341-1491911889:161413..162343 | TCONS_00060364-exon-scaffold_341-1491911889:161413..162343 | Clytia hemisphaerica | exon |
| TCONS_00060364-exon-scaffold_341-1510915933:161413..162343 | TCONS_00060364-exon-scaffold_341-1510915933:161413..162343 | Clytia hemisphaerica | exon |
| TCONS_00060364-exon-scaffold_341-1575043694:161413..162343 | TCONS_00060364-exon-scaffold_341-1575043694:161413..162343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:160735..162343 + |
Blast
The following BLAST results are available for this feature:
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