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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060363 ID=TCONS_00060363|Name=TCONS_00060363|organism=Clytia hemisphaerica|type=transcript|length=1485bp
accaatcaaattgtgcTTCAAATAAATAAGGACAGGACATCTTGATAATT
Gtacatttattgaatttatttttagtgctataaaaaaaatgaatgaaatg
aatGAAAGTGAAGTTTGGACATTTGGATGTACTTGGCATTTATTTGTGAT
GGATTGGTTTTTATGGCTGAATGAGTTATACTGGTAAGAGTGAAAAAAGC
ATGGTGCCATGAATCTGGACCTTTCAATGAATGGAATTTTGAATTTCATG
ATTTAGAATTAACGATTTTTACGAGATCAATAAAGGCAAAAGGAATAATA
TATCGAGACAATGATATTTATTTACAAGAGAGTCGAGCACAATTGAAAGG
CTTTTCAAATCAACTATTTTAAATATGAATGGAAGTAAAGAAAAAGATTA
TGATTTTATATACACCCTTGTCGTTCTTGGTAATATTAACACCGGTAAAA
GAATCGTCCATGCGAAGATCTGTCACATGGAGAATGAATCTTGGCTTGGC
GATTTTGTTGTATTAAACAAGCAACTGGAAACTGGAGAAAGATTGAAATT
GAGACTTAGTTTGGAAACTGGTGGCGAACGTTGGACTCACAGATGTATTT
CTGACAGAAAGTTTGCTACTTATCAAGGAATATTTCTTGTTTATAATTAT
TGTTTGAGAAAAACCTTCGACATATTGAATGATTGGCTGGACGCTATCAA
GAAAAGGGGTCCAGAAGACAGTATAATTATGATTGTTGGTAACAAATATG
TTCACTCAAATATGACAGATGAAAGGGAAGTTACTTTTGAAGAAGGACAT
AAATTTGCATACCAGAATGGGCTTTCATTTATGGAAATCACTGACCATAA
TCAGCAGACACTTGTTGACGAGAAATTTATGGATCTGGTCTGTAATGTAC
ACGAGAAACAAAAAGATAAACCTATAGTCGAGAAACAGAGAACCCAAGAG
ACGCTATCTTCCAATCGCACAAAATGCACTATCAtctgaattcaatgaat
gtcCGTTTTTCACATTGTTCGATCGAAAGGCTGAGGAAATGTTACTCCTG
ACTACAAGGGAAGATGGCAGCTTTAATTTTGATGTTGAGAAGAGCTTTAT
ACGGCAAGTGTTTTTGCTGATCCAATTCCTTTGGATTTCTTCCTGCAAAC
GCTCGGATAATTTTTATTTCTGCTCTCCTTTGGACTTAAGTGACAATGAG
AAACACGAACAAAAATTATGAAACAAGAACCATACATTTACCGCATAAAA
CATTCCTTTTCTATGATTTACTTTTTTTGTACGCAGAAAAAAACCTCAAT
CGTGAGAGAGTTGTCAATGATTTAGATCAACATAGCGAGATGTTTAAACT
TTTTCACATCACTTGTTTTTGTGAAGGATTCTAATTATTTTTGCTCGCTC
TTGTAcatttatgaaaatatattgaattttgaaagaaagcTTCATTTCGA
TTTCCTTGGGACTGACTTGTTTCTGCCTATCTGGC Run BLAST on NCBI protein sequence of TCONS_00060363-protein >TCONS_00060363-protein ID=TCONS_00060363-protein|Name=TCONS_00060363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MNGSKEKDYDFIYTLVVLGNINTGKRIVHAKICHMENESWLGDFVVLNKQ
LETGERLKLRLSLETGGERWTHRCISDRKFATYQGIFLVYNYCLRKTFDI
LNDWLDAIKKRGPEDSIIMIVGNKYVHSNMTDEREVTFEEGHKFAYQNGL
SFMEITDHNQQTLVDEKFMDLVCNVHEKQKDKPIVEKQRTQETLSSNRTK
CTII Run BLAST on NCBI transcript from alignment at scaffold_341:160042..162343+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060363 ID=TCONS_00060363|Name=TCONS_00060363|organism=Clytia hemisphaerica|type=transcript|length=2302bp|location=Sequence derived from alignment at scaffold_341:160042..162343+ (Clytia hemisphaerica)
accaatcaaattgtgcTTCAAATAAATAAGGACAGGACATCTTGATAATT
Gtacatttattgaatttatttttagtgctataaaaaaaatgaatgaaatg
aatGAAAGTGAAGTTTGGACATTTGGATGTACTTGGCATTTATTTGTGAT
GGATTGGTTTTTATGGCTGAATGAGTTATACTGGTAAGAGTGAAAAAAGC
ATGGTGCCATGAATCTGGACCTTTCAATGAATGGAATTTTGAATTTCATG
ATTTAGAATTAACGATTTTTACGAGATCAATAAAGGCAAAAGGAATAATA
TATCGAGACAATGATATTTATTTACAAGAGAGTCGAGCACAATTGAAAGG
CTTTGTAAGTAGATTGAATGTTGAATGTTACTTTAAGCTATCTTCACTCT
TGTTTCAAGAAGAATATATAAGCAAAACCTGACTAGTATACGTAAGCATG
TGCATATGTTCCTCATAGGACACAGGTCTGCCTACTACTCTAAACCGATG
ATAGAGCTAGAATGTCCTATTTCATTACCAGTACATGTACAGCCATGATA
GGCTTGCCCAGAAAAGTAAATTCGTTGTGAagtacatacacgtttttttt
gtttataagaacatccaaaatatgtGAAGCCTATGTTCTTAAcacgttct
tattttcatcttgtCCATTTATCTTGTCCACGTCGAGTGCTTTCTTagct
tttgttcttataaaaagaagttgTGTACATGTGAGTACTTCAAAAAGGTA
ATTTACCTAATAGATATCGAGAACAGTATATGGTGTAACTTGTTGATAGG
TTCATTGTTATGAAGAAATGctgtttgttttgttgttgttcgCGATAAAA
TGTGATTTATCTATTTAAAAATGTACAGTAAGCTTTTCAATCTAAattga
gattttttagaaaCTGCTGCTAATATCAAGTCGGCAAGTCACCGATCTTA
GTTTTATCCTAAACCAATTTTCCAGTCAAATCAACTATTTTAAATATGAA
TGGAAGTAAAGAAAAAGATTATGATTTTATATACACCCTTGTCGTTCTTG
GTAATATTAACACCGGTAAAAGAATCGTCCATGCGAAGATCTGTCACATG
GAGAATGAATCTTGGCTTGGCGATTTTGTTGTATTAAACAAGCAACTGGA
AACTGGAGAAAGATTGAAATTGAGAGTAAGTTAAATGTCTTTGTTTTGTT
TAGATTTCTTTCCTTATCATGCTTTGCTTGTATTCTAACAGCGCCAATAT
CTTTACTCTTCCGTAGTACCTTGATCCAATCAAATGCCTTTGATAGCAGG
TTGGACATCTCTTTTTTATGTTGGTAGATAAAGAGAAATTAAtttgatcc
ttctctttaatTATATTATAGCTTAGTTTGGAAACTGGTGGCGAACGTTG
GACTCACAGATGTATTTCTGACAGAAAGTTTGCTACTTATCAAGGAATAT
TTCTTGTTTATAATTATTGTTTGAGAAAAACCTTCGACATATTGAATGAT
TGGCTGGACGCTATCAAGAAAAGGGGTCCAGAAGACAGTATAATTATGAT
TGTTGGTAACAAATATGTTCACTCAAATATGACAGATGAAAGGGAAGTTA
CTTTTGAAGAAGGACATAAATTTGCATACCAGAATGGGCTTTCATTTATG
GAAATCACTGACCATAATCAGCAGACACTTGTTGACGAGAAATTTATGGA
TCTGGTCTGTAATGTACACGAGAAACAAAAAGATAAACCTATAGTCGAGA
AACAGAGAACCCAAGAGACGCTATCTTCCAATCGCACAAAATGCACTATC
AtctgaattcaatgaatgtcCGTTTTTCACATTGTTCGATCGAAAGGCTG
AGGAAATGTTACTCCTGACTACAAGGGAAGATGGCAGCTTTAATTTTGAT
GTTGAGAAGAGCTTTATACGGCAAGTGTTTTTGCTGATCCAATTCCTTTG
GATTTCTTCCTGCAAACGCTCGGATAATTTTTATTTCTGCTCTCCTTTGG
ACTTAAGTGACAATGAGAAACACGAACAAAAATTATGAAACAAGAACCAT
ACATTTACCGCATAAAACATTCCTTTTCTATGATTTACTTTTTTTGTACG
CAGAAAAAAACCTCAATCGTGAGAGAGTTGTCAATGATTTAGATCAACAT
AGCGAGATGTTTAAACTTTTTCACATCACTTGTTTTTGTGAAGGATTCTA
ATTATTTTTGCTCGCTCTTGTAcatttatgaaaatatattgaattttgaa
agaaagcTTCATTTCGATTTCCTTGGGACTGACTTGTTTCTGCCTATCTG
GC Coding sequence (CDS) from alignment at scaffold_341:160042..162343+ >TCONS_00060363 ID=TCONS_00060363|Name=TCONS_00060363|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at scaffold_341:160042..162343+ (Clytia hemisphaerica)
ATGAATGGAAGTAAAGAAAAAGATTATGATTTTATATACACCCTTGTCGT
TCTTGGTAATATTAACACCGGTAAAAGAATCGTCCATGCGAAGATCTGTC
ACATGGAGAATGAATCTTGGCTTGGCGATTTTGTTGTATTAAACAAGCAA
CTGGAAACTGGAGAAAGATTGAAATTGAGACTTAGTTTGGAAACTGGTGG
CGAACGTTGGACTCACAGATGTATTTCTGACAGAAAGTTTGCTACTTATC
AAGGAATATTTCTTGTTTATAATTATTGTTTGAGAAAAACCTTCGACATA
TTGAATGATTGGCTGGACGCTATCAAGAAAAGGGGTCCAGAAGACAGTAT
AATTATGATTGTTGGTAACAAATATGTTCACTCAAATATGACAGATGAAA
GGGAAGTTACTTTTGAAGAAGGACATAAATTTGCATACCAGAATGGGCTT
TCATTTATGGAAATCACTGACCATAATCAGCAGACACTTGTTGACGAGAA
ATTTATGGATCTGGTCTGTAATGTACACGAGAAACAAAAAGATAAACCTA
TAGTCGAGAAACAGAGAACCCAAGAGACGCTATCTTCCAATCGCACAAAA
TGCACTATCAtctgaATGAATGGAAGTAAAGAAAAAGATTATGATTTTAT
ATACACCCTTGTCGTTCTTGGTAATATTAACACCGGTAAAAGAATCGTCC
ATGCGAAGATCTGTCACATGGAGAATGAATCTTGGCTTGGCGATTTTGTT
GTATTAAACAAGCAACTGGAAACTGGAGAAAGATTGAAATTGAGACTTAG
TTTGGAAACTGGTGGCGAACGTTGGACTCACAGATGTATTTCTGACAGAA
AGTTTGCTACTTATCAAGGAATATTTCTTGTTTATAATTATTGTTTGAGA
AAAACCTTCGACATATTGAATGATTGGCTGGACGCTATCAAGAAAAGGGG
TCCAGAAGACAGTATAATTATGATTGTTGGTAACAAATATGTTCACTCAA
ATATGACAGATGAAAGGGAAGTTACTTTTGAAGAAGGACATAAATTTGCA
TACCAGAATGGGCTTTCATTTATGGAAATCACTGACCATAATCAGCAGAC
ACTTGTTGACGAGAAATTTATGGATCTGGTCTGTAATGTACACGAGAAAC
AAAAAGATAAACCTATAGTCGAGAAACAGAGAACCCAAGAGACGCTATCT
TCCAATCGCACAAAATGCACTATCAtctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060363-exon-scaffold_341-1491911889:160042..160395 | TCONS_00060363-exon-scaffold_341-1491911889:160042..160395 | Clytia hemisphaerica | exon |
| TCONS_00060363-exon-scaffold_341-1510915933:160042..160395 | TCONS_00060363-exon-scaffold_341-1510915933:160042..160395 | Clytia hemisphaerica | exon |
| TCONS_00060363-exon-scaffold_341-1575043694:160042..160395 | TCONS_00060363-exon-scaffold_341-1575043694:160042..160395 | Clytia hemisphaerica | exon |
| TCONS_00060363-exon-scaffold_341-1491911889:161017..161216 | TCONS_00060363-exon-scaffold_341-1491911889:161017..161216 | Clytia hemisphaerica | exon |
| TCONS_00060363-exon-scaffold_341-1510915933:161017..161216 | TCONS_00060363-exon-scaffold_341-1510915933:161017..161216 | Clytia hemisphaerica | exon |
| TCONS_00060363-exon-scaffold_341-1575043694:161017..161216 | TCONS_00060363-exon-scaffold_341-1575043694:161017..161216 | Clytia hemisphaerica | exon |
| TCONS_00060363-exon-scaffold_341-1491911889:161413..162343 | TCONS_00060363-exon-scaffold_341-1491911889:161413..162343 | Clytia hemisphaerica | exon |
| TCONS_00060363-exon-scaffold_341-1510915933:161413..162343 | TCONS_00060363-exon-scaffold_341-1510915933:161413..162343 | Clytia hemisphaerica | exon |
| TCONS_00060363-exon-scaffold_341-1575043694:161413..162343 | TCONS_00060363-exon-scaffold_341-1575043694:161413..162343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:160042..162343 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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