|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060362 ID=TCONS_00060362|Name=TCONS_00060362|organism=Clytia hemisphaerica|type=transcript|length=2113bp
AAGTAACTGTCTATCATTTTTGTTATTAAGAGCTGATTTGCATGATTGAA
AAGTTTATGTGTTattaaaaattggattatttCAGTTTCTTAAAAGGAAC
CTTTCCCTCCTCATTCGATTGAAATTGATATACTGAGACATTAGATTACA
CATAGTTCAAACTGTTATGAAATGCTTGATACAGATTATATGTTTTCGTA
AGAATTAACTGTGAAAAAACGTTATTGCATTCACTTTAAACTATTTCGCC
TGTCTAGTAATTTCTCTCtatttagttttaaaaatagtttatgatcataa
actttttaaagtatagcaAGAAGCGATGATGCACTTATAAACGTGTGTTA
AACGTAGATAAAGCAGATTTATTCAttcagtttttattttgataaaaaac
aatTTCTATTTGAATTGATAACTGGTGTCTCTTAAGAAACACAAGTTGTT
ACTTGAACGTATtgcaaagaaaacatttttgtggCAATTATGAGAATGAC
TTGATAGAATATTTTTGTGATAGGTCTTGCTTTGAATATCTTGCTCTGAA
CACAAAGATCTTTCTCTTATTAcgtctttcattttattttgtaaagTGCA
CTTTTACATGAACCTAATTAAGAAATAAAACACCAAGTCAAATGGATCTA
CCGTCTTCTGGCAATGATCAATATGACTATTTATACAAGATAGTTTTGAC
TGGGGATTCTGGCGTGGGAAAATCCTGTCTTTTATCAAGATTCACACGTA
ATGAGTTTGATGTGGAATCCAGATCTACTATTGGTGTAGAATTTGCTACC
AGAAGCATCAAAGTTGCCGGGAAAACTATAAAAGCACAGGTCTGGGATAC
AGCAGGCCAAGAAAGGTATCGAGCCATCACTTCTGCTTATTATCGTGGTG
CAGTGGGGGCACTAATCACCTATGACATTTCAAAACTAAGAACATTCAAC
AATATTGAACGTTGGTTGAACGAGTTAAAAGAGCACTCTGACCCTGATAT
TGTTATAATGTTGGTTGGAAATAAAACGGATTTGAAGCACCTTCGTGCTG
TTAATACTGAAGATGCTAAAGAGTTTGCagaacaaaataaaatgatgTTT
ATTGAAACGTCTGCTTTGGATGCTACAAATGTTGAGTCAGCATTTATTTC
AACTATACAAAAAGTTCATGAAATTCAGCTGAGTAAAATCAAAGATCAAG
TACCCCATGTCAAAACTGAGACCGTTGAACTGTCGGCTAATGGTGAAAAG
AAGAACTGTGCTTGTTGATCTTGTTTTAATTTTATGGATCTTGAAAGTCT
TTAAGAAATATTTATGAGAATCACTTTACTACTATTCATCCAGTTAAAGC
GCCTCTTGAAAGATATCTTTGCGACTTTGGAAATCTTAGGAAATAAATAC
TACTATAAAGACTACAGttacttcttttcaaaaaattacatAAAGATCCT
TCAAGAATTATTCTCTCTTTCTAGTTCTTGCATAGTTTCTGCAATCTTCA
GTTTCCCTTCATAACCttagcaaaatatttcatgTAAAATAGAACTTTTT
GTAATATTATCGACATTTTATTagttatttttccattttctttacATTTA
ACACGAtgtattttttgatacttttggtAGAAGTTTTCACAGCAATTTCA
ATATTGTGTATAAaagttttagtttaatattATAATTATAGGGTTAGTAT
CATCATAAATTGGTATTACAACATAGTTAACTGTATTTTAAGGAGTGAAC
AACCGAATGGGGGTGCATTACAATTAGCCTTTTCCtgtcaaaagttattt
tttttctaaaaatcttaTTGAATAGATCGTCGAgttaaaaattatctttt
ttgacAGCTATATCTTTTAGAACTTGAATTTTTATAGTTATAAAATTTTA
TAGAGATAATCTTCTGAATAATTGCAAAACAATCTTTCCTTCGTTATTTC
TAATATTATACAGTGATTGATTACATAGTTACTTTTTGTTCTGCATATAT
TATTCTCCTTAGAAaaactcttctttttttttgaattgttaaAAATTGTA
TGTTGTAAATTAATCAGAATCTAGTTATAGCTCATTTTTACTAGAAATAA
AATTGTACTGACA Run BLAST on NCBI transcript from alignment at scaffold_341:157404..159737+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060362 ID=TCONS_00060362|Name=TCONS_00060362|organism=Clytia hemisphaerica|type=transcript|length=2334bp|location=Sequence derived from alignment at scaffold_341:157404..159737+ (Clytia hemisphaerica)
AAGTAACTGTCTATCATTTTTGTTATTAAGAGCTGATTTGCATGATTGAA
AAGTTTATGTGTTattaaaaattggattatttCAGTTTCTTAAAAGGAAC
CTTTCCCTCCTCATTCGATTGAAATTGATATACTGAGACATTAGATTACA
CATAGTTCAAACTGTTATGAAATGCTTGATACAGATTATATGTTTTCGTA
AGAATTAACTGTGAAAAAACGTTATTGCATTCACTTTAAACTATTTCGCC
TGTCTAGTAATTTCTCTCtatttagttttaaaaatagtttatgatcataa
actttttaaagtatagcaAGAAGCGATGATGCACTTATAAACGTGTGTTA
AACGTAGATAAAGCAGATTTATTCAttcagtttttattttgataaaaaac
aatTTCTATTTGAATTGATAACTGGTGTCTCTTAAGAAACACAAGTTGTT
ACTTGAACGTATtgcaaagaaaacatttttgtggCAATTATGAGAATGAC
TTGATAGAATATTTTTGTGATAGGTCTTGCTTTGAATATCTTGCTCTGAA
CACAAAGATCTTTCTCTTATTAcgtctttcattttattttgtaaagTGCA
CTTTTACATGAACCTAATTAAGAAATAAAACACCAAGTCAAATGGATCTA
CCGTCTTCTGGCAATGATCAATATGACTATTTATACAAGATAGTTTTGAC
TGGGGATTCTGGCGTGGGAAAATCCTGTCTTTTATCAAGATTCACACGTA
ATGAGTTTGATGTGGAATCCAGATCTACTATTGGTGTAGAATTTGCTACC
AGAAGCATCAAAGTTGCCGGGAAAACTATAAAAGCACAGGTATTGTAGGT
TCATTAGAACCATTATCATTGTAAAAAAAAGCTCCAATTACCTCATATTT
TTAGGTATTTTACGAAAGAAAATGATATTCAAAATCAACTTGCATTTACT
TCTAACTGTCTTAGTGAATGTTAAATTTCACACGGGATTCCTTTACGCCA
GCTACGCCTGGCATTTCATGTAATACAACAACCTTTCATCTTTCTGTTTT
CTTTCTCCAGGTCTGGGATACAGCAGGCCAAGAAAGGTATCGAGCCATCA
CTTCTGCTTATTATCGTGGTGCAGTGGGGGCACTAATCACCTATGACATT
TCAAAACTAAGAACATTCAACAATATTGAACGTTGGTTGAACGAGTTAAA
AGAGCACTCTGACCCTGATATTGTTATAATGTTGGTTGGAAATAAAACGG
ATTTGAAGCACCTTCGTGCTGTTAATACTGAAGATGCTAAAGAGTTTGCa
gaacaaaataaaatgatgTTTATTGAAACGTCTGCTTTGGATGCTACAAA
TGTTGAGTCAGCATTTATTTCAACTATACAAAAAGTTCATGAAATTCAGC
TGAGTAAAATCAAAGATCAAGTACCCCATGTCAAAACTGAGACCGTTGAA
CTGTCGGCTAATGGTGAAAAGAAGAACTGTGCTTGTTGATCTTGTTTTAA
TTTTATGGATCTTGAAAGTCTTTAAGAAATATTTATGAGAATCACTTTAC
TACTATTCATCCAGTTAAAGCGCCTCTTGAAAGATATCTTTGCGACTTTG
GAAATCTTAGGAAATAAATACTACTATAAAGACTACAGttacttcttttc
aaaaaattacatAAAGATCCTTCAAGAATTATTCTCTCTTTCTAGTTCTT
GCATAGTTTCTGCAATCTTCAGTTTCCCTTCATAACCttagcaaaatatt
tcatgTAAAATAGAACTTTTTGTAATATTATCGACATTTTATTagttatt
tttccattttctttacATTTAACACGAtgtattttttgatacttttggtA
GAAGTTTTCACAGCAATTTCAATATTGTGTATAAaagttttagtttaata
ttATAATTATAGGGTTAGTATCATCATAAATTGGTATTACAACATAGTTA
ACTGTATTTTAAGGAGTGAACAACCGAATGGGGGTGCATTACAATTAGCC
TTTTCCtgtcaaaagttattttttttctaaaaatcttaTTGAATAGATCG
TCGAgttaaaaattatcttttttgacAGCTATATCTTTTAGAACTTGAAT
TTTTATAGTTATAAAATTTTATAGAGATAATCTTCTGAATAATTGCAAAA
CAATCTTTCCTTCGTTATTTCTAATATTATACAGTGATTGATTACATAGT
TACTTTTTGTTCTGCATATATTATTCTCCTTAGAAaaactcttctttttt
tttgaattgttaaAAATTGTATGTTGTAAATTAATCAGAATCTAGTTATA
GCTCATTTTTACTAGAAATAAAATTGTACTGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060362-exon-scaffold_341-1491911889:157404..158242 | TCONS_00060362-exon-scaffold_341-1491911889:157404..158242 | Clytia hemisphaerica | exon |
| TCONS_00060362-exon-scaffold_341-1510915933:157404..158242 | TCONS_00060362-exon-scaffold_341-1510915933:157404..158242 | Clytia hemisphaerica | exon |
| TCONS_00060362-exon-scaffold_341-1575043694:157404..158242 | TCONS_00060362-exon-scaffold_341-1575043694:157404..158242 | Clytia hemisphaerica | exon |
| TCONS_00060362-exon-scaffold_341-1491911889:158464..159737 | TCONS_00060362-exon-scaffold_341-1491911889:158464..159737 | Clytia hemisphaerica | exon |
| TCONS_00060362-exon-scaffold_341-1510915933:158464..159737 | TCONS_00060362-exon-scaffold_341-1510915933:158464..159737 | Clytia hemisphaerica | exon |
| TCONS_00060362-exon-scaffold_341-1575043694:158464..159737 | TCONS_00060362-exon-scaffold_341-1575043694:158464..159737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:157404..159737 + |
Blast
BLAST of TCONS_00060362 vs. Swiss-Prot (Human)
Match: RB11B (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4) HSP 1 Score: 270.396 bits (690), Expect = 6.722e-85 Identity = 131/206 (63.59%), Postives = 168/206 (81.55%), Query Frame = 3
Query: 663 NDQYDYLYKIVLTGDSGVGKSCLLSRFTRNEFDVESRSTIGVEFATRSIKVAGKTIKAQVWDTAGQERYRAITSAYYRGAVGALITYDISKLRTFNNIERWLNELKEHSDPDIVIMLVGNKTDLKHLRAVNTEDAKEFAEQNKMMFIETSALDATNVESAFISTIQKVHEIQLSK-IKDQVPHVKTE-------TVELSANGEKKN 1256
+D+YDYL+K+VL GDSGVGKS LLSRFTRNEF++ES+STIGVEFATRSI+V GKTIKAQ+WDTAGQERYRAITSAYYRGAVGAL+ YDI+K T+ N+ERWL EL++H+D +IVIMLVGNK+DL+HLRAV T++A+ FAE+N + FIETSALD+TNVE AF + + +++ I K I D+ H ++ +V + +G+K N
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPN 210
The following BLAST results are available for this feature:
|
