TCONS_00060358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060358
Unique NameTCONS_00060358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060358 ID=TCONS_00060358|Name=TCONS_00060358|organism=Clytia hemisphaerica|type=transcript|length=749bp
TGAAAGCGGAAAAGCTGCAAAAGATGTCGAGAAAGACAAGTTACTTGGAG
AAGACATTCGTCAGAAGGCTATGGAATCTCAGAGCCAGACCCTCAAACGA
AAAAGTGAGTCATCAGACGAGGAGGTCAAAAAGAGAAGATCATCAGGGAG
TGATGCTGTCTGTTTCTTAAGAGAGAAATCTGAAGCTGATGTAAAAATGC
GAGAAAAAGAACTTGAGGTACAAACCCAAAGACTTCAATTAGAAGCTACT
AAAATTCAAAACGATCAAATAATTTTATTAACATGTATGCACTGATGTCA
AATCAGATGCAACAGAATCAACAGATGACACTCAACATCATCGAAAGACT
TACAAATTCAGATAAAGGTGAGAATGGCCAATGAACTTGACTTAACTGGA
CTCGAAAATGTTGATTTTGTTTACAATTGTTGACATTTTTGTTGGGAAAA
ACTCACGAAATATGAAAGACTTCTGATTATTTTGATTTTGTTTACAATCT
TTGACATTTTTGTTGGAAATTGAAATATGAAAGACTATACTTGGACATTT
TACATGAAACTGTGAGTTGTTTTATTTTTGTTTATGAAAAAAGAAAATTT
TGTATATACTACCAGCTCCGAAATCTATTTTTTAGATTTTTTTACAAACC
TTTGAAAGGCTATTTTGTTATTTATTTACACTTTGAAATTAATTTATGTT
TTACCTGAAGTCATGATTCAGATATCAAGActtattttgtatatttttt
Run BLAST on NCBI

transcript from alignment at scaffold_340:340509..341257

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060358 ID=TCONS_00060358|Name=TCONS_00060358|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at scaffold_340:340509..341257 (Clytia hemisphaerica)
aaaaaatatacaaaataagTCTTGATATCTGAATCATGACTTCAGGTAAA
ACATAAATTAATTTCAAAGTGTAAATAAATAACAAAATAGCCTTTCAAAG
GTTTGTAAAAAAATCTAAAAAATAGATTTCGGAGCTGGTAGTATATACAA
AATTTTCTTTTTTCATAAACAAAAATAAAACAACTCACAGTTTCATGTAA
AATGTCCAAGTATAGTCTTTCATATTTCAATTTCCAACAAAAATGTCAAA
GATTGTAAACAAAATCAAAATAATCAGAAGTCTTTCATATTTCGTGAGTT
TTTCCCAACAAAAATGTCAACAATTGTAAACAAAATCAACATTTTCGAGT
CCAGTTAAGTCAAGTTCATTGGCCATTCTCACCTTTATCTGAATTTGTAA
GTCTTTCGATGATGTTGAGTGTCATCTGTTGATTCTGTTGCATCTGATTT
GACATCAGTGCATACATGTTAATAAAATTATTTGATCGTTTTGAATTTTA
GTAGCTTCTAATTGAAGTCTTTGGGTTTGTACCTCAAGTTCTTTTTCTCG
CATTTTTACATCAGCTTCAGATTTCTCTCTTAAGAAACAGACAGCATCAC
TCCCTGATGATCTTCTCTTTTTGACCTCCTCGTCTGATGACTCACTTTTT
CGTTTGAGGGTCTGGCTCTGAGATTCCATAGCCTTCTGACGAATGTCTTC
TCCAAGTAACTTGTCTTTCTCGACATCTTTTGCAGCTTTTCCGCTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037981XLOC_037981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060358-exon-scaffold_340-1491911889:340509..341257TCONS_00060358-exon-scaffold_340-1491911889:340509..341257Clytia hemisphaericaexon
TCONS_00060358-exon-scaffold_340-1510915933:340509..341257TCONS_00060358-exon-scaffold_340-1510915933:340509..341257Clytia hemisphaericaexon
TCONS_00060358-exon-scaffold_340-1575043694:340509..341257TCONS_00060358-exon-scaffold_340-1575043694:340509..341257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:340509..341257 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.82508	3.1393	2.15726	1.01888	12.3153	9.45169	3.88549	3.47939	4.87201	3.77173	3.195	4.94437	1.31084	0.635283	1.7534	1.20106	1.08505	1.466	1.32696	1.97323	2.0327	1.67313	1.28061	1.30123	9.73434	10.0097	1.53148	1.15372	1.89596	1.11443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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