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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060348 ID=TCONS_00060348|Name=TCONS_00060348|organism=Clytia hemisphaerica|type=transcript|length=1686bp
NTTCCAAGTAAAGTTCCACTGGAACTGCAAGGTTTAACACAGGTTGAAGA
AATGCTTATTGCTAGAGCATTTCCTGTTATTCAAGTTTATACTAAGCCAA
ATGGAGGACAAAAAGCTTATAAAGGACATGTTCTAACTTTACCTCATGAT
GTTCAGCACTTTGCTAATGTTTTGCCAAGATGTCCCAGTGATATACCAGT
TATCGTTTTTAAAATTGACGGGAAAGATAACAGATCAAGAGACCTAAGAG
TACGGagacaaaaagttcttgatgCATTAGTGTGGCTAACCGGAAAGAAT
AGTATGGGGGAACCAAACAACCCAAGGTACCAAAATGTGACTATTGATAG
AAGTAGATTTGATAAATTGCCTGAAGATGATTATTTGCAAATGCCAATGA
ATGTAGACTTCAATCAAGAAGAGGTTGAAGATGATGATTTAGATAATGAG
GGAATTCTTCCTGATTTTGGTCCGAATTCTGAGGATAGTGAAGAAAAAGT
TTATGATTGTAATACTGAAATGGGGAGTTTTATTCCAATTAAAGTAAAAA
CTAAGAAAGAAAAGGATATAATTAATGATTCAATCTGTTAAGATAGGCAA
CGAGCCTTTAAATGAGTTCACTACAGAGTATTTGGCTACTTTAGCTTTTC
CAACACTTTTCCCAGATGCTAAAGGAGATCCAACCAATTCAAGCATCAGA
AAGTCTATTGCTAAAAGTGATACAgaatcttttttctgaaaagattaaac
atttgataaaatttgctGAAATGATAGATGGGAAATAGGTATACAGATTT
GCAGCCTATCCTCAATTTGGGTTTTGGGCTTACAATATGCTTTATCGTAG
ACGTCTGTTAGGACAAGGAAGTTTTTACTTGAAGCAAAATCCAGGAGAAG
CTAATTTGACGATTAATGAATTACAGGATATGGTTAGAGAAGGTAGTCAT
GCTACAATCATGAAAAAGCTAATGAGATATGCGAAGAATGTAACAGGTAC
AAATGCGTACTGGAATCATGCTAAAGAAGAATTAAAAGCTACAATTAGTC
AGGTTGGTTCTCCAACAATTTTTTGGACTCTGTCTTTTGCTGAATTCCAT
TGGCCAGAATATCATGcattattttcaaatgataatgATAGCTCAAGTGA
TACATTGCgagaaaatattataaataatCCTCATTTGATAGACTGGTTTT
TTTACTGTCAGAGTTGAAAACTTTGCTAAACTTTGGCTTTATGAGACTTT
AGCTGCTGAATGGCACTGGTACAGATTTGAATATGCTGTTATGAGAGGCT
CTATCCACTTTCATGGGGTAGCAAAACTGAAAAATGACCCAGGATTGTGC
TCTCTTACTCAAAAGGCTTTAGAAGGGCATATAGCTGAGAAAGAATTACT
AGATTCTGAATTTGAGGATAATGTCAGAGTTGAGCTTGAAACTAAAGTCA
ATGAAGGAAAATCTGCAGAAAAGGAATTTACTGAATATGTCGATTCTATT
GTGACAGCTTGTAAACCCTGTACTCCTGAAGAAGGATGGGTAAAACCGTA
AGTGCAACCAtgcaaaaaaagttgaagacaTTAATGAAAATGAGCTTGAC
GATGATTATGCAAATTTAGTAAATAGTGTTCAGAGGCATACTAAGTGCAG
TACAGCCTATTGCTTACGTAAAAAGAATGACGATGA Run BLAST on NCBI protein sequence of TCONS_00060348-protein >TCONS_00060348-protein ID=TCONS_00060348-protein|Name=TCONS_00060348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
XPSKVPLELQGLTQVEEMLIARAFPVIQVYTKPNGGQKAYKGHVLTLPHD
VQHFANVLPRCPSDIPVIVFKIDGKDNRSRDLRVRRQKVLDALVWLTGKN
SMGEPNNPRYQNVTIDRSRFDKLPEDDYLQMPMNVDFNQEEVEDDDLDNE
GILPDFGPNSEDSEEKVYDCNTEMGSFIPIKVKTKKEKDIINDSIC Run BLAST on NCBI transcript from alignment at scaffold_340:149581..151266 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060348 ID=TCONS_00060348|Name=TCONS_00060348|organism=Clytia hemisphaerica|type=transcript|length=1686bp|location=Sequence derived from alignment at scaffold_340:149581..151266 (Clytia hemisphaerica)
TCATCGTCATTCTTTTTACGTAAGCAATAGGCTGTACTGCACTTAGTATG
CCTCTGAACACTATTTACTAAATTTGCATAATCATCGTCAAGCTCATTTT
CATTAAtgtcttcaactttttttgcaTGGTTGCACTTACGGTTTTACCCA
TCCTTCTTCAGGAGTACAGGGTTTACAAGCTGTCACAATAGAATCGACAT
ATTCAGTAAATTCCTTTTCTGCAGATTTTCCTTCATTGACTTTAGTTTCA
AGCTCAACTCTGACATTATCCTCAAATTCAGAATCTAGTAATTCTTTCTC
AGCTATATGCCCTTCTAAAGCCTTTTGAGTAAGAGAGCACAATCCTGGGT
CATTTTTCAGTTTTGCTACCCCATGAAAGTGGATAGAGCCTCTCATAACA
GCATATTCAAATCTGTACCAGTGCCATTCAGCAGCTAAAGTCTCATAAAG
CCAAAGTTTAGCAAAGTTTTCAACTCTGACAGTAAAAAAACCAGTCTATC
AAATGAGGattatttataatattttctcGCAATGTATCACTTGAGCTATc
attatcatttgaaaataatgCATGATATTCTGGCCAATGGAATTCAGCAA
AAGACAGAGTCCAAAAAATTGTTGGAGAACCAACCTGACTAATTGTAGCT
TTTAATTCTTCTTTAGCATGATTCCAGTACGCATTTGTACCTGTTACATT
CTTCGCATATCTCATTAGCTTTTTCATGATTGTAGCATGACTACCTTCTC
TAACCATATCCTGTAATTCATTAATCGTCAAATTAGCTTCTCCTGGATTT
TGCTTCAAGTAAAAACTTCCTTGTCCTAACAGACGTCTACGATAAAGCAT
ATTGTAAGCCCAAAACCCAAATTGAGGATAGGCTGCAAATCTGTATACCT
ATTTCCCATCTATCATTTCagcaaattttatcaaatgtttaatcttttca
gaaaaaagattcTGTATCACTTTTAGCAATAGACTTTCTGATGCTTGAAT
TGGTTGGATCTCCTTTAGCATCTGGGAAAAGTGTTGGAAAAGCTAAAGTA
GCCAAATACTCTGTAGTGAACTCATTTAAAGGCTCGTTGCCTATCTTAAC
AGATTGAATCATTAATTATATCCTTTTCTTTCTTAGTTTTTACTTTAATT
GGAATAAAACTCCCCATTTCAGTATTACAATCATAAACTTTTTCTTCACT
ATCCTCAGAATTCGGACCAAAATCAGGAAGAATTCCCTCATTATCTAAAT
CATCATCTTCAACCTCTTCTTGATTGAAGTCTACATTCATTGGCATTTGC
AAATAATCATCTTCAGGCAATTTATCAAATCTACTTCTATCAATAGTCAC
ATTTTGGTACCTTGGGTTGTTTGGTTCCCCCATACTATTCTTTCCGGTTA
GCCACACTAATGcatcaagaactttttgtctCCGTACTCTTAGGTCTCTT
GATCTGTTATCTTTCCCGTCAATTTTAAAAACGATAACTGGTATATCACT
GGGACATCTTGGCAAAACATTAGCAAAGTGCTGAACATCATGAGGTAAAG
TTAGAACATGTCCTTTATAAGCTTTTTGTCCTCCATTTGGCTTAGTATAA
ACTTGAATAACAGGAAATGCTCTAGCAATAAGCATTTCTTCAACCTGTGT
TAAACCTTGCAGTTCCAGTGGAACTTTACTTGGAAN Coding sequence (CDS) from alignment at scaffold_340:149581..151266 >TCONS_00060348 ID=TCONS_00060348|Name=TCONS_00060348|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_340:149581..151266 (Clytia hemisphaerica)
TTAACAGATTGAATCATTAATTATATCCTTTTCTTTCTTAGTTTTTACTT
TAATTGGAATAAAACTCCCCATTTCAGTATTACAATCATAAACTTTTTCT
TCACTATCCTCAGAATTCGGACCAAAATCAGGAAGAATTCCCTCATTATC
TAAATCATCATCTTCAACCTCTTCTTGATTGAAGTCTACATTCATTGGCA
TTTGCAAATAATCATCTTCAGGCAATTTATCAAATCTACTTCTATCAATA
GTCACATTTTGGTACCTTGGGTTGTTTGGTTCCCCCATACTATTCTTTCC
GGTTAGCCACACTAATGcatcaagaactttttgtctCCGTACTCTTAGGT
CTCTTGATCTGTTATCTTTCCCGTCAATTTTAAAAACGATAACTGGTATA
TCACTGGGACATCTTGGCAAAACATTAGCAAAGTGCTGAACATCATGAGG
TAAAGTTAGAACATGTCCTTTATAAGCTTTTTGTCCTCCATTTGGCTTAG
TATAAACTTGAATAACAGGAAATGCTCTAGCAATAAGCATTTCTTCAACC
TGTGTTAAACCTTGCAGTTCCAGTGGAACTTTACTTGGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060348-exon-scaffold_340-1491911889:149581..151266 | TCONS_00060348-exon-scaffold_340-1491911889:149581..151266 | Clytia hemisphaerica | exon |
| TCONS_00060348-exon-scaffold_340-1510915933:149581..151266 | TCONS_00060348-exon-scaffold_340-1510915933:149581..151266 | Clytia hemisphaerica | exon |
| TCONS_00060348-exon-scaffold_340-1575043694:149581..151266 | TCONS_00060348-exon-scaffold_340-1575043694:149581..151266 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:149581..151266 . |
Blast
The following BLAST results are available for this feature:
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