TCONS_00060341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060341
Unique NameTCONS_00060341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060341 ID=TCONS_00060341|Name=TCONS_00060341|organism=Clytia hemisphaerica|type=transcript|length=778bp
GTGAGATACTTATATGAGGTATAAGGTAATGATGCATGATACAATgatca
aatagaataaaaacttttcttttttcatataGGAACAACAATAATATCAT
AATACACTGTGTATGATACAAACTTTGTAACGTaaaaagtaaaactttaa
aGCATGATCCTTCGTAAATTTCCTTTTCTTTGCAAAGAGTAACCTTAGCA
TTCCTGCGTGAAAGCTGTAATCGTTGGAGATTTTGTTTCCACTGAAACGA
GCGACCCACTCCCAAGCGTCTTTGAGAGCTTTGAAATTCTTATAGATGAA
GTTTTCCTGTTGACGTCTGAGGAAACTCTGAACAATGTGATGTCTTTGTA
GGGCCCTTTTTATGATAGCGTTGGGTTGATTCCAAATTAACCTTGTGTGC
CCACCATTAAAAACATGTCTCAAATGGTCGATTCTTGTAGGCACAAAGGA
TGTTAAAAGTTTTTGTACTTCTTAAGTCAATTTTGAAAtcgTTAATTAAT
TGCTTGAAAACTGATTGTGGTGAAGAGCGTAATAAATTTCGATCGTGAGG
CAAGGGATGCCAGTTTTCAAAAGTTGCTTTGTGAAGTGAAGAATCTTTGT
AGTCTTTTACAGAAACACTTTTATTCCTACGAAGAGATAAAAAGCCAAAG
AGTCGATGTAGTCCGTTGCTTCTTCCTGAAAGTCAAAAGAGATGGGATTG
CAAacataaaccagctgcgctggaagctccggcttaagagattaaaagat
gtgaaagatgagcttgttgagttagttg
Run BLAST on NCBI

transcript from alignment at scaffold_340:80294..81071

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060341 ID=TCONS_00060341|Name=TCONS_00060341|organism=Clytia hemisphaerica|type=transcript|length=778bp|location=Sequence derived from alignment at scaffold_340:80294..81071 (Clytia hemisphaerica)
caactaactcaacaagctcatctttcacatcttttaatctcttaagccgg
agcttccagcgcagctggtttatgtTTGCAATCCCATCTCTTTTGACTTT
CAGGAAGAAGCAACGGACTACATCGACTCTTTGGCTTTTTATCTCTTCGT
AGGAATAAAAGTGTTTCTGTAAAAGACTACAAAGATTCTTCACTTCACAA
AGCAACTTTTGAAAACTGGCATCCCTTGCCTCACGATCGAAATTTATTAC
GCTCTTCACCACAATCAGTTTTCAAGCAATTAATTAAcgaTTTCAAAATT
GACTTAAGAAGTACAAAAACTTTTAACATCCTTTGTGCCTACAAGAATCG
ACCATTTGAGACATGTTTTTAATGGTGGGCACACAAGGTTAATTTGGAAT
CAACCCAACGCTATCATAAAAAGGGCCCTACAAAGACATCACATTGTTCA
GAGTTTCCTCAGACGTCAACAGGAAAACTTCATCTATAAGAATTTCAAAG
CTCTCAAAGACGCTTGGGAGTGGGTCGCTCGTTTCAGTGGAAACAAAATC
TCCAACGATTACAGCTTTCACGCAGGAATGCTAAGGTTACTCTTTGCAAA
GAAAAGGAAATTTACGAAGGATCATGCtttaaagttttactttttACGTT
ACAAAGTTTGTATCATACACAGTGTATTATGATATTATTGTTGTTCCtat
atgaaaaaagaaaagtttttattctatttgatcATTGTATCATGCATCAT
TACCTTATACCTCATATAAGTATCTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037964XLOC_037964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060341-exon-scaffold_340-1491911889:80294..81071TCONS_00060341-exon-scaffold_340-1491911889:80294..81071Clytia hemisphaericaexon
TCONS_00060341-exon-scaffold_340-1510915933:80294..81071TCONS_00060341-exon-scaffold_340-1510915933:80294..81071Clytia hemisphaericaexon
TCONS_00060341-exon-scaffold_340-1575043694:80294..81071TCONS_00060341-exon-scaffold_340-1575043694:80294..81071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:80294..81071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40821	2.19519	0.849979	0.402044	0.253428	0.602514	0.0808676	0.530054	0.211254	0.196186	0.129996	0.335881	0.457781	0.479594	0.283541	0.761102	1.47683	1.07623	0.206469	0	0.469538	0.397896	0.886491	0.959421	0.406822	0.659367	0.195134	0.51267	0.605004	0.621168
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top