TCONS_00060340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060340
Unique NameTCONS_00060340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060340 ID=TCONS_00060340|Name=TCONS_00060340|organism=Clytia hemisphaerica|type=transcript|length=394bp
TTAGATTTCCAACTGTAAACGAGAAACCTGGAAATGAAAACCCGTTTGCT
CAGGTTTGCATCCAAATAGTCTGCACTTTAATATAATCCCAGACACTTCC
AGGCAGTGTGTTCAGAAAACAAgtgtgatagactctctactttTCGCTGA
TAAACAGTATTACATCTTAGCTGAGAGTTCAGAGTTCAGCAGGAATATTT
TATCTGGGAATCTCTGTATTTTGATCGTAATTCGATTGCAATTCTTGAAA
AATTACGTGGATCATAAGGGTTGATTCCATTGATAGCAAACGGGGATAGC
AATTACAGTAAATATTAATAGACCGATTCCTAGTGACGTCAATTTCGTCA
ACGATTAGCCATTCTTCTGAAAAATAGTATGAAGAATATAGGGT
Run BLAST on NCBI

transcript from alignment at scaffold_340:43681..44074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060340 ID=TCONS_00060340|Name=TCONS_00060340|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_340:43681..44074 (Clytia hemisphaerica)
ACCCTATATTCTTCATACTATTTTTCAGAAGAATGGCTAATCGTTGACGA
AATTGACGTCACTAGGAATCGGTCTATTAATATTTACTGTAATTGCTATC
CCCGTTTGCTATCAATGGAATCAACCCTTATGATCCACGTAATTTTTCAA
GAATTGCAATCGAATTACGATCAAAATACAGAGATTCCCAGATAAAATAT
TCCTGCTGAACTCTGAACTCTCAGCTAAGATGTAATACTGTTTATCAGCG
AaaagtagagagtctatcacacTTGTTTTCTGAACACACTGCCTGGAAGT
GTCTGGGATTATATTAAAGTGCAGACTATTTGGATGCAAACCTGAGCAAA
CGGGTTTTCATTTCCAGGTTTCTCGTTTACAGTTGGAAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037963XLOC_037963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060340-exon-scaffold_340-1491911889:43681..44074TCONS_00060340-exon-scaffold_340-1491911889:43681..44074Clytia hemisphaericaexon
TCONS_00060340-exon-scaffold_340-1510915933:43681..44074TCONS_00060340-exon-scaffold_340-1510915933:43681..44074Clytia hemisphaericaexon
TCONS_00060340-exon-scaffold_340-1575043694:43681..44074TCONS_00060340-exon-scaffold_340-1575043694:43681..44074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:43681..44074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191772	0	0.868534	1.48702	0	0.204361	0	0	0	0	0	0	0	0	0.653365	0.584301	0	0	0	0	0.185416	0	0	0	0	0	0	0	0.212852	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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