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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060332 ID=TCONS_00060332|Name=TCONS_00060332|organism=Clytia hemisphaerica|type=transcript|length=1976bp
CAGTCATCCATGCGTGCAATTGGACGAGAATCAGATGGAAGTATCGAACT
GCTCCAATTATTGCAATCCAAGCTTCCATCATACCTTCAAGACAGATGGG
GTCGTAAAGCATATCAAATTCGCAAAGAAAAGAGGAGGGAAGCAACCGTC
ACAGACTTCATCAAATGATTCCATGAAGAAACTGAAATCATCAGCGACCC
TCTTTTCTCCAGAGATGCAATCACTGAGGCATACAAGGACAACAACCGAG
ATCCATCAAAGCGTAATCCGAGGGCAAGATCATTTGGTACCGGAACCAAA
GAAGTTGTTTGCGTCTGCTATGGAAAGAAAAATCACGTCCTCGAGAAGTG
CTTCAAATTCAATAAGCTTAATCCTTCAGAGAAAAAGAACCTCGTATTCA
AGAGTCGTTTGTGCTTCCGTTGTCTCGAACCAGTTACCGATTCTCACTTG
GGCAAGACCTGCAAGAAGCCAAAGAGATGCACTGTATGCAACCAACCGCA
TCCAACATGCCTTCATCAAGACAAGCCATCTGCAAATGACGATCAACAAA
CCCCTGAAGTCAGACCACGACCAGAAGTCAGACCACGACCAGAAGTTAGA
TAACGACCAGACGTTAGACCATCACCTCCTGTGATATCTGCATTTGTCAA
CCAATCAAACGATGTTGGTCTCTGTATTGTTATGGTGAAAGTCAATCACC
CCGACGTACCAAATAAATTAGTTACAACGCTTGCTCTTCTGGACAATGGG
TCACAAGGGACATTTGTCAGTGATGAACTCATCAAAGAGCTTGGCATCAA
AGGATCAAACACGTGCTTGGAAATCCAAACAGTCAACGGCAAATCCTATC
AAGCTTGCAAATCAATCACTGGTCTGAAAGTTTCACCAATTGAAAGCAAC
AATGTCATTATTCACTTGCCAAAGTCATACAGTCGTTCTGCTATACCAGT
CGAGCCTGATGATGTGCCAACAGCTTCAAAGTTGGCATCCTGGAAGTACC
TACATCCAATCCTTCAGCATCTACCACCTGATAGAAGAAATTCGAACGTT
GGTATTCTCATTGGATCAAATTGTCCTCGTGCATTGGAACCCTTGTGCGT
CATTCGAAGTCAAGATGGTGGTCCTTATGCAACCAAAACAAAACTTGGTT
GGTGCGTCACTGGCCCAATGGGAAGTCAAACCTATCAACGCCAGATCAGT
TGCAATCGGGTAAACGTGAAGTCCGAAGATTCAAGTCATTACTTCAACTT
CAAGGAGACCATCAAAGATGTATCCATCAGAGAAGGTATGCTCGCTATGT
ACAATCTTGATTTTCATGAAGTAGCCAACCGAATGGGTTTATCCATCGAC
GATGAAAGATTTCTAAAGATTGTGAGCTCAGGCAAGAATATCAACGACAG
ATTCCACTTGCCTCTTCCATTACGTAATCTAGACAAGATCGTCTCAAACA
ACCGCTCACAGGTCATACAACGAGCCTACTGGTTCAAGAAAAAGATGATC
AACAATCCCAAGCTGCTAGACGATTACACCAACTTCATGAAATCACTCAT
CGACAAGGCTCCAACACCAAACCGAACCTGGTACATTCCTCACTTTGCTG
TGTACCACCCTAAAAAGCCGGACAAAGTCAGAATCGTCTTTGACTGCAGT
TGCTGAATGTCACAATTACTGTCTCAACAAAGAGTTACTTCAAGGACCAG
ACATGACGAACCAGCTGATTGGTGTTTTGACAAGATTTCACCAAGGACCA
ATTGCAGTGATGGCAGACATAGAGACAATGTTTCACCAAGTACATGTCGA
AGAGGAATATCACGACTATCTTCGTTTTGTTGGCTGGCCAGATTGTGACT
TATCAAACGAACTTGTCAATTATCAAATGTGTGTCCATCTTCAAGGAGCA
ACATCTTCACCCAGCTGTGCTAATTATGCACTACGAGAAACTGCCAAGTT
GTATAAAGATCAATTTAGCGAAGACG Run BLAST on NCBI transcript from alignment at scaffold_340:172612..174587- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060332 ID=TCONS_00060332|Name=TCONS_00060332|organism=Clytia hemisphaerica|type=transcript|length=1976bp|location=Sequence derived from alignment at scaffold_340:172612..174587- (Clytia hemisphaerica)
CAGTCATCCATGCGTGCAATTGGACGAGAATCAGATGGAAGTATCGAACT
GCTCCAATTATTGCAATCCAAGCTTCCATCATACCTTCAAGACAGATGGG
GTCGTAAAGCATATCAAATTCGCAAAGAAAAGAGGAGGGAAGCAACCGTC
ACAGACTTCATCAAATGATTCCATGAAGAAACTGAAATCATCAGCGACCC
TCTTTTCTCCAGAGATGCAATCACTGAGGCATACAAGGACAACAACCGAG
ATCCATCAAAGCGTAATCCGAGGGCAAGATCATTTGGTACCGGAACCAAA
GAAGTTGTTTGCGTCTGCTATGGAAAGAAAAATCACGTCCTCGAGAAGTG
CTTCAAATTCAATAAGCTTAATCCTTCAGAGAAAAAGAACCTCGTATTCA
AGAGTCGTTTGTGCTTCCGTTGTCTCGAACCAGTTACCGATTCTCACTTG
GGCAAGACCTGCAAGAAGCCAAAGAGATGCACTGTATGCAACCAACCGCA
TCCAACATGCCTTCATCAAGACAAGCCATCTGCAAATGACGATCAACAAA
CCCCTGAAGTCAGACCACGACCAGAAGTCAGACCACGACCAGAAGTTAGA
TAACGACCAGACGTTAGACCATCACCTCCTGTGATATCTGCATTTGTCAA
CCAATCAAACGATGTTGGTCTCTGTATTGTTATGGTGAAAGTCAATCACC
CCGACGTACCAAATAAATTAGTTACAACGCTTGCTCTTCTGGACAATGGG
TCACAAGGGACATTTGTCAGTGATGAACTCATCAAAGAGCTTGGCATCAA
AGGATCAAACACGTGCTTGGAAATCCAAACAGTCAACGGCAAATCCTATC
AAGCTTGCAAATCAATCACTGGTCTGAAAGTTTCACCAATTGAAAGCAAC
AATGTCATTATTCACTTGCCAAAGTCATACAGTCGTTCTGCTATACCAGT
CGAGCCTGATGATGTGCCAACAGCTTCAAAGTTGGCATCCTGGAAGTACC
TACATCCAATCCTTCAGCATCTACCACCTGATAGAAGAAATTCGAACGTT
GGTATTCTCATTGGATCAAATTGTCCTCGTGCATTGGAACCCTTGTGCGT
CATTCGAAGTCAAGATGGTGGTCCTTATGCAACCAAAACAAAACTTGGTT
GGTGCGTCACTGGCCCAATGGGAAGTCAAACCTATCAACGCCAGATCAGT
TGCAATCGGGTAAACGTGAAGTCCGAAGATTCAAGTCATTACTTCAACTT
CAAGGAGACCATCAAAGATGTATCCATCAGAGAAGGTATGCTCGCTATGT
ACAATCTTGATTTTCATGAAGTAGCCAACCGAATGGGTTTATCCATCGAC
GATGAAAGATTTCTAAAGATTGTGAGCTCAGGCAAGAATATCAACGACAG
ATTCCACTTGCCTCTTCCATTACGTAATCTAGACAAGATCGTCTCAAACA
ACCGCTCACAGGTCATACAACGAGCCTACTGGTTCAAGAAAAAGATGATC
AACAATCCCAAGCTGCTAGACGATTACACCAACTTCATGAAATCACTCAT
CGACAAGGCTCCAACACCAAACCGAACCTGGTACATTCCTCACTTTGCTG
TGTACCACCCTAAAAAGCCGGACAAAGTCAGAATCGTCTTTGACTGCAGT
TGCTGAATGTCACAATTACTGTCTCAACAAAGAGTTACTTCAAGGACCAG
ACATGACGAACCAGCTGATTGGTGTTTTGACAAGATTTCACCAAGGACCA
ATTGCAGTGATGGCAGACATAGAGACAATGTTTCACCAAGTACATGTCGA
AGAGGAATATCACGACTATCTTCGTTTTGTTGGCTGGCCAGATTGTGACT
TATCAAACGAACTTGTCAATTATCAAATGTGTGTCCATCTTCAAGGAGCA
ACATCTTCACCCAGCTGTGCTAATTATGCACTACGAGAAACTGCCAAGTT
GTATAAAGATCAATTTAGCGAAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060332-exon-scaffold_340-1575043694:172612..174587 | TCONS_00060332-exon-scaffold_340-1575043694:172612..174587 | Clytia hemisphaerica | exon |
| TCONS_00060332-exon-scaffold_340-1510915933:172612..174587 | TCONS_00060332-exon-scaffold_340-1510915933:172612..174587 | Clytia hemisphaerica | exon |
| TCONS_00060332-exon-scaffold_340-1491911889:172612..174587 | TCONS_00060332-exon-scaffold_340-1491911889:172612..174587 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:172612..174587 - |
Blast
The following BLAST results are available for this feature:
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