TCONS_00060331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060331
Unique NameTCONS_00060331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060331 ID=TCONS_00060331|Name=TCONS_00060331|organism=Clytia hemisphaerica|type=transcript|length=2245bp
CAGTCATCCATGCGTGCAATTGGACGAGAATCAGATGGAAGTATCGAACT
GCTCCAATTATTGCAATCCAAGCTTCCATCATACCTTCAAGACAGATGGG
GTCGTAAAGCATATCAAATTCGCAAAGAAAAGAGGAGGGAAGCAACCGTC
ACAGACTTCATCAAATGATTCCATGAAGAAACTGAAATCATCAGCGACCC
TCTTTTCTCCAGAGATGCAATCACTGAGGCATACAAGGACAACAACCGAG
ATCCATCAAAGCGTAATCCGAGGGCAAGATCATTTGGTACCGGAACCAAA
GAAGTTGTTTGCGTCTGCTATGGAAAGAAAAATCACGTCCTCGAGAAGTG
CTTCAAATTCAATAAGCTTAATCCTTCAGAGAAAAAGAACCTCGTATTCA
AGAGTCGTTTGTGCTTCCGTTGTCTCGAACCAGTTACCGATTCTCACTTG
GGCAAGACCTGCAAGAAGCCAAAGAGATGCACTGTATGCAACCAACCGCA
TCCAACATGCCTTCATCAAGACAAGCCATCTGCAAATGACGATCAACAAA
CCCCTGAAGTCAGACCACGACCAGAAGTCAGACCACGACCAGAAGTTAGA
TAACGACCAGACGTTAGACCATCACCTCCTGTGATATCTGCATTTGTCAA
CCAATCAAACGATGTTGGTCTCTGTATTGTTATGGTGAAAGTCAATCACC
CCGACGTACCAAATAAATTAGTTACAACGCTTGCTCTTCTGGACAATGGG
TCACAAGGGACATTTGTCAGTGATGAACTCATCAAAGAGCTTGGCATCAA
AGGATCAAACACGTGCTTGGAAATCCAAACAGTCAACGGCAAATCCTATC
AAGCTTGCAAATCAATCACTGGTCTGAAAGTTTCACCAATTGAAAGCAAC
AATGTCATTATTCACTTGCCAAAGTCATACAGTCGTTCTGCTATACCAGT
CGAGCCTGATGATGTGCCAACAGCTTCAAAGTTGGCATCCTGGAAGTACC
TACATCCAATCCTTCAGCATCTACCACCTGATAGAAGAAATTCGAACGTT
GGTATTCTCATTGGATCAAATTGTCCTCGTGCATTGGAACCCTTGTGCGT
CATTCGAAGTCAAGATGGTGGTCCTTATGCAACCAAAACAAAACTTGGTT
GGTGCGTCACTGGCCCAATGGGAAGTCAAACCTATCAACGCCAGATCAGT
TGCAATCGGGTAAACGTGAAGTCCGAAGATTCAAGTCATTACTTCAACTT
CAAGGAGACCATCAAAGATGTATCCATCAGAGAAGGTATGCTCGCTATGT
ACAATCTTGATTTTCATGAAGTAGCCAACCGAATGGGTTTATCCATCGAC
GATGAAAGATTTCTAAAGATTGTGAGCTCAGGCAAGCATATCAACAACAG
ATCNATCGAAATGTCCTAGCAACCATCCCAGAGGAAGAGAAGTCAAAACG
CCTGAAGAATTTGGATATGTCATCAAATCCCATCCCAGAGGAACGTGCAC
TTGGAATGAACTGGGATCCAGAATCTGaccaatttttcttcaaaatcgaA
CTAAAGGAAAGACCAGCAACTACAAGAGGAGTCCTGTCAACCATTAGCTC
CATTTATGATCCACTTGGTATCGTTTCACCCTATCTACTTGAAGGAAAGA
AGCTTCTCCAGCAGATCTGCGTGGAGAAGGGTTGGTATGATCCACTGTCG
CCAATGCAAAGTCAACAGTGGGAACAGTGGAAGAAGGAAATCAAACTGCT
GGAAAAAGTTATCATCGACCAATGCTTCCATCCAAGTGGATTTGGCCAGA
TTATCGATTCATCGCTACACCATTTCTCAGATACGTCTTGTGATGCATAT
GGTCAAGCATCATACATCAGACTTATCGACACTGCTGGAAACATATCCAT
CAAGTTGGTGATGTCCAAATCAAGAGTCGCCCCTCCAAAACGACCAACCA
TCCCACGATTAGAATTAACAGATGCAGTATTATCAGTAAAGATTGCCAAC
TCACTCCATAATGAGCTTGATATCCTCATCACAAACGAATACTTTTGGAC
AGATTCACAAGTTGTGTTGGCATACATCAGCAATGAGGTTAAACgttttc
atttatttgtttCAAATCGCATCAAGTTCATCCGAGAAAATAGTGCACTT
GATCAATGGCTTTACGTACCATCCAAGGAAAATCCTTCAGACGACACCAC
AAGAGGATTGAAGTTCAACAACACAGCAAAAGACAAACGTTGGAT
Run BLAST on NCBI

protein sequence of TCONS_00060331-protein

>TCONS_00060331-protein ID=TCONS_00060331-protein|Name=TCONS_00060331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MSSNPIPEERALGMNWDPESDQFFFKIELKERPATTRGVLSTISSIYDPL
GIVSPYLLEGKKLLQQICVEKGWYDPLSPMQSQQWEQWKKEIKLLEKVII
DQCFHPSGFGQIIDSSLHHFSDTSCDAYGQASYIRLIDTAGNISIKLVMS
KSRVAPPKRPTIPRLELTDAVLSVKIANSLHNELDILITNEYFWTDSQVV
LAYISNEVKRFHLFVSNRIKFIRENSALDQWLYVPSKENPSDDTTRGLKF
NNTAKDKRW
Run BLAST on NCBI

transcript from alignment at scaffold_340:171384..174587-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060331 ID=TCONS_00060331|Name=TCONS_00060331|organism=Clytia hemisphaerica|type=transcript|length=3204bp|location=Sequence derived from alignment at scaffold_340:171384..174587- (Clytia hemisphaerica)
CAGTCATCCATGCGTGCAATTGGACGAGAATCAGATGGAAGTATCGAACT
GCTCCAATTATTGCAATCCAAGCTTCCATCATACCTTCAAGACAGATGGG
GTCGTAAAGCATATCAAATTCGCAAAGAAAAGAGGAGGGAAGCAACCGTC
ACAGACTTCATCAAATGATTCCATGAAGAAACTGAAATCATCAGCGACCC
TCTTTTCTCCAGAGATGCAATCACTGAGGCATACAAGGACAACAACCGAG
ATCCATCAAAGCGTAATCCGAGGGCAAGATCATTTGGTACCGGAACCAAA
GAAGTTGTTTGCGTCTGCTATGGAAAGAAAAATCACGTCCTCGAGAAGTG
CTTCAAATTCAATAAGCTTAATCCTTCAGAGAAAAAGAACCTCGTATTCA
AGAGTCGTTTGTGCTTCCGTTGTCTCGAACCAGTTACCGATTCTCACTTG
GGCAAGACCTGCAAGAAGCCAAAGAGATGCACTGTATGCAACCAACCGCA
TCCAACATGCCTTCATCAAGACAAGCCATCTGCAAATGACGATCAACAAA
CCCCTGAAGTCAGACCACGACCAGAAGTCAGACCACGACCAGAAGTTAGA
TAACGACCAGACGTTAGACCATCACCTCCTGTGATATCTGCATTTGTCAA
CCAATCAAACGATGTTGGTCTCTGTATTGTTATGGTGAAAGTCAATCACC
CCGACGTACCAAATAAATTAGTTACAACGCTTGCTCTTCTGGACAATGGG
TCACAAGGGACATTTGTCAGTGATGAACTCATCAAAGAGCTTGGCATCAA
AGGATCAAACACGTGCTTGGAAATCCAAACAGTCAACGGCAAATCCTATC
AAGCTTGCAAATCAATCACTGGTCTGAAAGTTTCACCAATTGAAAGCAAC
AATGTCATTATTCACTTGCCAAAGTCATACAGTCGTTCTGCTATACCAGT
CGAGCCTGATGATGTGCCAACAGCTTCAAAGTTGGCATCCTGGAAGTACC
TACATCCAATCCTTCAGCATCTACCACCTGATAGAAGAAATTCGAACGTT
GGTATTCTCATTGGATCAAATTGTCCTCGTGCATTGGAACCCTTGTGCGT
CATTCGAAGTCAAGATGGTGGTCCTTATGCAACCAAAACAAAACTTGGTT
GGTGCGTCACTGGCCCAATGGGAAGTCAAACCTATCAACGCCAGATCAGT
TGCAATCGGGTAAACGTGAAGTCCGAAGATTCAAGTCATTACTTCAACTT
CAAGGAGACCATCAAAGATGTATCCATCAGAGAAGGTATGCTCGCTATGT
ACAATCTTGATTTTCATGAAGTAGCCAACCGAATGGGTTTATCCATCGAC
GATGAAAGATTTCTAAAGATTGTGAGCTCAGGCAAGAATATCAACGACAG
ATTCCACTTGCCTCTTCCATTACGTAATCTAGACAAGATCGTCTCAAACA
ACCGCTCACAGGTCATACAACGAGCCTACTGGTTCAAGAAAAAGATGATC
AACAATCCCAAGCTGCTAGACGATTACACCAACTTCATGAAATCACTCAT
CGACAAGGCTCCAACACCAAACCGAACCTGGTACATTCCTCACTTTGCTG
TGTACCACCCTAAAAAGCCGGACAAAGTCAGAATCGTCTTTGACTGCAGT
TGCTGAATGTCACAATTACTGTCTCAACAAAGAGTTACTTCAAGGACCAG
ACATGACGAACCAGCTGATTGGTGTTTTGACAAGATTTCACCAAGGACCA
ATTGCAGTGATGGCAGACATAGAGACAATGTTTCACCAAGTACATGTCGA
AGAGGAATATCACGACTATCTTCGTTTTGTTGGCTGGCCAGATTGTGACT
TATCAAACGAACTTGTCAATTATCAAATGTGTGTCCATCTTCAAGGAGCA
ACATCTTCACCCAGCTGTGCTAATTATGCACTACGAGAAACTGCCAAGTT
GTATAAAGATCAATTTAGCGAAGACGCTTCTAACACCTTGATTCGTAATT
TCTATGTTGACGACATGTTAAAGTGATTTCTAAGCACCCAAGAAGCTATC
GTCACAATTCCAAACATTGTCAACATGTCAAATGCTGGTGGATTTAGATT
AACGAATTCAAATGATCGAAATANACTGGGTTGGTGCGTCACTGGCCCAA
TGGGAAGTCAAACCTATCAACGCCAGATCAGTTGCAATCGGGTAAACGTG
AAGTCCGACGATTCAAGTCATTACTTCAACTTCAAGGGGACCATCAAAGA
TGTATTCATCAGAGAAGGTATGCTCGCTATGTACAATCTTGATTTTCATG
AAATAGCCAACCGAATGGGTTTATCCATCGACGATGAAAGGCAAGCATAT
CAACAACAGATCNATCGAAATGTCCTAGCAACCATCCCAGAGGAAGAGAA
GTCAAAACGCCTGAAGAATTTGGATATGTCATCAAATCCCATCCCAGAGG
AACGTGCACTTGGAATGAACTGGGATCCAGAATCTGACCAATTTTTCTTC
AAAATCGAACTAAAGGAAAGACCAGCAACTACAAGAGGAGTCCTGTCAAC
CATTAGCTCCATTTATGATCCACTTGGTATCGTTTCACCCTATCTACTTG
AAGGAAAGAAGCTTCTCCAGCAGATCTGCGTGGAGAAGGGTTGGTATGAT
CCACTGTCGCCAATGCAAAGTCAACAGTGGGAACAGTGGAAGAAGGAAAT
CAAACTGCTGGAAAAAGTTATCATCGACCAATGCTTCCATCCAAGTGGAT
TTGGCCAGATTATCGATTCATCGCTACACCATTTCTCAGATACGTCTTGT
GATGCATATGGTCAAGCATCATACATCAGACTTATCGACACTGCTGGAAA
CATATCCATCAAGTTGGTGATGTCCAAATCAAGAGTCGCCCCTCCAAAAC
GACCAACCATCCCACGATTAGAATTAACAGATGCAGTATTATCAGTAAAG
ATTGCCAACTCACTCCATAATGAGCTTGATATCCTCATCACAAACGAATA
CTTTTGGACAGATTCACAAGTTGTGTTGGCATACATCAGCAATGAGGTTA
AACGTTTTCATTTATTTGTTTCAAATCGCATCAAGTTCATCCGAGAAAAT
AGTGCACTTGATCAATGGCTTTACGTACCATCCAAGGAAAATCCTTCAGA
CGACACCACAAGAGGATTGAAGTTCAACAACACAGCAAAAGACAAACGTT
GGAT

Coding sequence (CDS) from alignment at scaffold_340:171384..174587-

>TCONS_00060331 ID=TCONS_00060331|Name=TCONS_00060331|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at scaffold_340:171384..174587- (Clytia hemisphaerica)
ATGTCATCAAATCCCATCCCAGAGGAACGTGCACTTGGAATGAACTGGGA
TCCAGAATCTGACCAATTTTTCTTCAAAATCGAACTAAAGGAAAGACCAG
CAACTACAAGAGGAGTCCTGTCAACCATTAGCTCCATTTATGATCCACTT
GGTATCGTTTCACCCTATCTACTTGAAGGAAAGAAGCTTCTCCAGCAGAT
CTGCGTGGAGAAGGGTTGGTATGATCCACTGTCGCCAATGCAAAGTCAAC
AGTGGGAACAGTGGAAGAAGGAAATCAAACTGCTGGAAAAAGTTATCATC
GACCAATGCTTCCATCCAAGTGGATTTGGCCAGATTATCGATTCATCGCT
ACACCATTTCTCAGATACGTCTTGTGATGCATATGGTCAAGCATCATACA
TCAGACTTATCGACACTGCTGGAAACATATCCATCAAGTTGGTGATGTCC
AAATCAAGAGTCGCCCCTCCAAAACGACCAACCATCCCACGATTAGAATT
AACAGATGCAGTATTATCAGTAAAGATTGCCAACTCACTCCATAATGAGC
TTGATATCCTCATCACAAACGAATACTTTTGGACAGATTCACAAGTTGTG
TTGGCATACATCAGCAATGAGGTTAAACGTTTTCATTTATTTGTTTCAAA
TCGCATCAAGTTCATCCGAGAAAATAGTGCACTTGATCAATGGCTTTACG
TACCATCCAAGGAAAATCCTTCAGACGACACCACAAGAGGATTGAAGTTC
AACAACACAGCAAAAGACAAACGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037955XLOC_037955Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060331-proteinTCONS_00060331-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060331-exon-scaffold_340-1575043694:173207..174587TCONS_00060331-exon-scaffold_340-1575043694:173207..174587Clytia hemisphaericaexon
TCONS_00060331-exon-scaffold_340-1575043694:171384..172247TCONS_00060331-exon-scaffold_340-1575043694:171384..172247Clytia hemisphaericaexon
TCONS_00060331-exon-scaffold_340-1510915933:173207..174587TCONS_00060331-exon-scaffold_340-1510915933:173207..174587Clytia hemisphaericaexon
TCONS_00060331-exon-scaffold_340-1510915933:171384..172247TCONS_00060331-exon-scaffold_340-1510915933:171384..172247Clytia hemisphaericaexon
TCONS_00060331-exon-scaffold_340-1491911889:173207..174587TCONS_00060331-exon-scaffold_340-1491911889:173207..174587Clytia hemisphaericaexon
TCONS_00060331-exon-scaffold_340-1491911889:171384..172247TCONS_00060331-exon-scaffold_340-1491911889:171384..172247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:171384..174587 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34431	1.34899	0.762721	0.620687	1.0119	0.869873	0.467485	0.601088	0.327144	0.470992	0.549225	0.589525	0.0930506	0.322637	0.443348	0.63816	0.424421	0.346967	0.518588	0.276659	0.356373	0.336294	0.32859	0.584274	0.215855	0.177084	0.413312	0.279282	0.495625	0.388835
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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