TCONS_00060326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060326
Unique NameTCONS_00060326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060326 ID=TCONS_00060326|Name=TCONS_00060326|organism=Clytia hemisphaerica|type=transcript|length=2426bp
CTCCGATCAACAGCAATGTCAGTTCTCTCACGTTTTGGACTAACAGTTCA
TGGTCGTAGTCTTACGAGAAAGCTAGAAGAAATGGGAAAAGATTTTGACA
AGAAAGTTATCCAATGGAAGATTGCACGGGACCGTTTTCTTACAGGCAGA
AAAGCTTTGAAGTTCCTAACCAAGTTCTTTACCAAGAATACTCCAATTGA
AACAAGTCAAGCCGTGCTGCTCATCAAACTTCTATGTCGAGAGGTTCAAA
TCGATGACATTAATGATGAGTTGGCATCTAGATTCCTTCCTGCATTTGAC
GAGACACTGATGGTAGTGGCTTCGCACTTCATTATGCAGATGAAGTCCCG
AAAGATCACCCTGTCAAAACTTGATGAGTTTTGCTCCGAATACATCGACG
AACGTAGTTCTACCGTCGCCTTCCATGAATCGCTGAAGAAAATCAAGATC
AAACCGTGTCCATCTTTCAGTCTGGGTGGCGACAATTGTGATATGCACGT
CAGCACCAGACAAAAGAGTCTCTCCAACCCAAATAAATCGTTCCATTGGT
TTCATTCTTTTGCCATTTTGGATCCAGTGTCTGGAGACCATCTGCCTGAT
GTGCACACCGCTAGGCTGAAGGATGTCCCTATCAGAGATTTTTTACCATC
CTCTCATGATCATTCAATGATGAAAAGAGATATGATCCTTATTTGCACAA
AGATACTGGTGAAACACCTTCCAAGTCTACAAGAATTTAACGATTGCGTT
TTTTGGCAAATTCCCCACAAATATTCAAAGGAACTTTCTGCCAAAGCTGT
AGAGGTTCCTTTGGGTATAATTCCTCGCAATGAAAACTCAACCAAAGGCA
TGATAGAAATCATCGAGGAGCTCAGCAAAAACTATGGCTTGGAGGATGAA
GACGAATTTCTTTTCATGGGTGGAGATCAGGTGACTGAAGACCGGGCAAG
GCACTGCCAAGCAGCAAGGTGCGAAGAAGAATCTCGCGAAGACCGCCTCG
AAAAATTCTGGTTTAAAAACGAAGACTGGCACTTTGAAAGAATTGCCTAC
AAGTGCGTGTTGGACAAGCTTTCGAGCAGCAGATGTGCGGGTGACTCTGG
TACCTTTTACAGTAATGCTGTTAAATTAGGAAACAGTAACGCGACCACTG
ACGTTATGGGAAGCCactacaacaaaataaaagaattctTTCAAGTACAT
ACATCTGCTATGGTCGTTGTTGCCTTCACTGAACATCTCGGAATGAAGTC
TGTGGACGACAAAATCGAAGTTCCTGAAAGACTTAGCTCTGTCGCTGAAC
GTAGACGCTGGCTGTTCGGTTTGATCAACAAGATGCTTGAAAAGTTCGTG
CTTCCAGAAATTGAcgaattgacaaaaattgagGAAAGATTGTTTCAAAA
GGTTGCGTGTCAGCAGCCTGGGTGTTCATCCCTATTTACAACGTTAGTTG
GACTGAAGGCTCACGAAAAGAATTTTCATAAAATCGACCACACCGAAAAG
GCAGAACCCAAATTGGATGAAGGAGAAGATCCGGTGTTCAACTATGGATG
TGTGAGCTTATCATATGGCCTCCTTCTGAAGAATTTGGGGGACGCAATTA
AGGAAGGTGACGGAGAAAGGGTTGTTCGATGCTGGAAGTATTTTACCTAC
GTATTCAAAAGCACTGGACAAGCCCATAAAAACTATGCTTTGGCTGGTCT
GCGATTGATTGCTTCAATTAAAGGATTACTGACACCAGCAAAGGCACACG
AACTTATATGGAACAGATTTTGTAATACGGCTGGCGGAATCGGGAAATGT
ATCCCGCGAGATTTGAGAAACGAGCATCTCAATAAAATTGCCAAGGAGCA
TATTCGTAGTCTTGGTCATTCAAATATTTCTGACGATAATGTGGTAAAAA
TGTCACGCACAATTGGTTGTATGGAGGACATAGTAAGAAGTTTTGCGcaa
aaagaaaatcagaaaactcataaaaaaaatccTCATGAAAAGACACAGCT
TGCCCATTGCATCTCTGAAATAACACAGGCAAACATGTTCAATCATGTGA
GTGGTCGAGAGCTGAATGGTTTTCCTGATTTCAAAAGATCTATTTACAGT
GGATTAGAACCAATTACACTCAAAAATTGGTTGGTTCAGTATCGCCACCA
ATGGGacattgaaaatagaaatatttataaatttgaCGACTAAATTGTTT
GGCATTTCTCTTTGtatttataagaaaactctGCATTTTATATACAATAT
GGTTCATTTAATTTCTGTTTGTAACAGTGTTACTTTgtgttaccttaagg
gaagaaattttcgcggaatttaatttcgcgaattggggcgtaattcgcga
aattaaattccgcgaaattcgattttttgtcttcttctcttattttgttg
tttttgaccaggtgtaACCAAAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_340:107835..113478-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060326 ID=TCONS_00060326|Name=TCONS_00060326|organism=Clytia hemisphaerica|type=transcript|length=5644bp|location=Sequence derived from alignment at scaffold_340:107835..113478- (Clytia hemisphaerica)
CTCCGATCAACAGTAAGTCCTTGTTTCTTAATCTAATATTATAAGGAATA
ACCAGCTATTTCTCATTATCAGATGTATCTTCTTAGAGTGGTTGGTTCTG
AGAGCTTTCTGACACTTGAAACTATAGCTAAAATTACCTTATCTATAATA
CCCTAATCTATAATAAATGCATTTGCTACTCTATCAGCCAAATCTCCTGA
GTGATGGATAATTAGCTGGTTATTATGCTTTAACACTACATGTTGTTATG
AGGATCATGAAAAAGTATTTTATTTTCTCTCTCCGCGCCCTTGTGTCTTT
AATCACTTAATCATGCATGCTTAGAGTTCTACCAGGATTTTAACCTTACT
GCTAACAAAATCAACAAAATCTCAAAGATATTTGTGTAAAAGTAAGAAAA
TTATCCTGGTTTTATAACATAGCTTGAAAGTGAGTGGTTTAATGTACTTT
AAAGTCAAAAACGTTAGTTTTGACTACAACCACATTGACATTTAGCCAGG
CTCTGTTAGTACAAAGCAACCTGGGGGCTACTCTAAGACAACATTACTGT
ATTACCGTAGAGGTAATAAAAATATAGATGGAGATACCACTCCTACTATT
CTATTGTATTATACCATTGATAGCAAACTGTTGATTTGGGAGAAAGCCAT
TTAAATTTTGCTTTCGCTTATGGGAATAGTTAATCGAAGAGAATTTGAAT
AAAATCGTGCTACATTTTTAATTTATTCATTGTGTGATGACAGGTTTTAT
TGATAAAATATAAAACCTTTCAAGAATAATCACAGAAAATCGAATTTGAA
ATGTTCACTGGTCAGAGAATCCTCGGCAAACTTTATTAATTTCTACATAT
TTACTAATCTTTCAACTATATTCTATCAAAATTTTGAGGCAGCTGGNTAT
ATTATACAACTTTACATTCTACAGACCGTTAAAAATTCTTCATTTATTTT
AGGTTCCTTTGGGTATATATCCTCGCAATGAAAACTCAACCGAAGGCATG
ATAGAAATCATCGAGGAGCTCAGCAAAAACTATGGCTTGGAGGATGAAGA
CGAATTTCTTTNTCACAAACAACAAAGAATTCGCAAAATTTGAAAGAAAT
TGTTAAAATTTCTAAAGAGTTTTAAGTTGTTAATTTATGTAACTTTTATT
ACCTCTATGATAATACACGGGGGCTGTTTCTAATTTTTCATTTGCGCCCA
TAACCAAGGAAATTTGTTCAAAAAATAAGAAATTTTCTTTTTTATTCTCT
TTAAAGGCAATGTCAGTTCTCTCACGTTTTGGACTAACAGTTCATGGTCG
TAGTCTTACGAGAAAGCTAGAAGAAATGGGAAAAGATTTTGACAAGAAAG
TTATCCAATGGAAGATTGCACGGGACCGTTTTCTTACAGGCAGAAAAGCT
TTGAAGTTCCTAACCAAGTTCTTTACCAAGAATACTCCAATTGAAACAAG
TCAAGCCGTGCTGCTCATCAAACTTCTATGTCGAGAGGTTCAAATCGATG
ACATTAATGATGAGTTGGCATCTAGATTCCTTCCTGCATTTGACGAGACA
CTGATGGTAGTGGCTTCGCACTTCATTATGCAGATGAAGTCCCGAAAGAT
CACCCTGTCAAAACTTGATGAGTTTTGCTCCGAATACATCGACGAACGTA
GTTCTACCGTCGCCTTCCATGAATCGCTGAAGAAAATCAAGATCAAACCG
TGTCCATCTTTCAGTCTGGGTGGCGACAATTGTGATATGCACGTCAGCAC
CAGACAAAAGAGTCTCTCCAACCCAAATAAATCGTTCCATTGGTTTCATT
CTTTTGCCATTTTGGATCCAGTGTCTGGAGACCATCTGCCTGATGTGCAC
ACCGCTAGGCTGAAGGATGTCCCTATCAGAGATTTTTTACCATCCTCTCA
TGATCATTCAATGATGAAAAGAGATATGATCCTTATTTGCACAAAGATAC
TGGTGAAACACCTTCCAAGTCTACAAGAATTTAACGATTGCGTTTTTTGG
CAAATTCCCCACAAATATTCAAAGGAACTTTCTGCCAAAGCTGTAGAGGT
ATAATTCGAGAACGGTTGTTTCACAGTGACGTAATCTCAAACAAATTTTG
AATTCTCAAATATTATACAACATTATTCTACAGACCGTTAAAAATTCTTC
ATTTATTTTAGGTTCCTTTGGGTATAATTCCTCGCAACGAAAACTCAACC
GAAGGCATGATAGAAATCATCGAGGAGCTCAGCAAAAACTATGGCTTCGA
GGATGAAGACGAATTTATTTTCATTGGTGAAGATCAGGTATGTATGTTTC
ACGGTGCGTTATACCAGGTGTGCCAAAAAAATAGACGTAACTTTTTTCAG
TTAGAATAGAAACTTGAAATTTTACATGCGTCTTAAGCAACCTATTTCAA
AGCTTTCCTGAAAGTTTCATTCTTATAGCTTTAGTAGTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTTAAAAATTCTTCATTTATTTTAGGTTC
CTTTGGGTATAATTCCTCGCAATGAAAACTCAACCAAAGGCATGATAGAA
ATCATCGAGGAGCTCAGCAAAAACTATGGCTTGGAGGATGAAGACGAATT
TCTTTTCATGGGTGGAGATCAGGTATGTATGTTTAACGGTGCGTTATATG
CCATTTTAGGTCGTTTAATTCGAATTTCCACATTTTCCTATAAGAATTTA
AAGAAGTTTTTTTGAATTTTTGTTTCGAAAACTTCAGGTGACTGAAGACC
GGGCAAGGCACTGCCAAGCAGCAAGGTGCGAAGAAGAATCTCGCGAAGAC
CGCCTCGAAAAATTCTGGTTTAAAAACGAAGACTGGCACTTTGAAAGAAT
TGCCTACAAGGTAGACATAATTTGCTAATTTATTTACTCGATAAACTAAG
TTCTTTACTGCATATGCTGTTGTATATTATGGTTTATTTTAATATGAAAT
AATTATATTTTCAGTGCGTGTTGGACAAGCTTTCGAGCAGCAGATGTGCG
GGTGACTCTGGTACCTTTTACAGTAATGCTGTTAAATTAGGAAACAGTAA
CGCGACCACTGACGTTATGGGAAGCCACTACAACAAAATAAAAGAATTCT
TTCAAGTACATGTAGGTTGTTTTCTTCAAGATAATCGGATATCCGTTTTT
GTTACTAGATGGCTACTACTACTTTACTTTAGCAATTCCACCAGAGACAT
ATTCTCAAAATTCTTGACATCTAATACTTATACAATTCACAATATTTGAA
ATATTTTCCTTTTCACAGACATCTGCTATGGTCGTTGTTGCCTTCACTGA
ACATCTCGGAATGAAGTCTGTGGACGACAAAATCGAAGTTCCTGAAAGAC
TTAGCTCTGTCGCTGAACGTAGACGCTGGCTGTTCGGTTTGATCAACAAG
ATGCTTGAAAAGTTCGTGCTTCCAGAAATTGACGAATTGACAAAAATTGA
GGAAAGATTGTTTCAAAAGGTTGCGTGTCAGCAGCCTGGGTGTTCATCCC
TATTTACAACGTTAGTTGGACTGAAGGCTCACGAAAAGAATTTTCATAAA
ATCGACCACACCGAAAAGGCAGAACCCAAATTGGATGAAGGAGAAGATCC
GGTGTTCAACTATGGATGTGTGAGCTTATCATATGGCCTCCTTCTGAAGA
ATTTGGGGGACGCAATTAAGGAAGGTGACGGAGAAAGGGTTGTTCGATGC
TGGAAGTATTTTACCTACGTATTCAAAAGCACTGGACAAGCCCATAAAAA
CTATGCTTTGGCTGGTCTGCGATTGATTGCTTCAATTAAAGGATTACTGA
CACCAGCAAAGGCACACGAACTTATATGGAACAGATTTTGTAATACGGCT
GGCGGAATCGGGAAATGTATCCCGCGAGATTTGAGAAACGAGCATCTCAA
TAAAATTGCCAAGGAGCATATTCGTAGTCTTGGTCATTCAAATATTTCTG
ACGATAATGTGGTAAAAATGTCACGCACAATTGGTTGTATGGAGGACATA
GTAAGAAGTTTTGCGCAAAAAGAAAATCAGAAAACTCATAAAAAAAATCC
TCATGAAAAGACACAGCTTGCCCATTGCATCTCTGAAATAACACAGGCAA
ACATGTTCAATCATGTGAGTGGTCGAGAGCTGAATGGTTTTCCTGATTTC
AAAAGATCTATTTACAGTGGATTAGAACCAATTACACTCAAAAATTGGTT
GGTTCAGTATCGCCACCAATGGGACATTGAAAATAGAAATATTTATAAAT
TTGACGACTAAATTGTTTGGCATTTCTCTTTGTATTTATAAGAAAACTCT
GCATTTTATATACAATATGGTTCATTTAATTTCTGTTTGTAACAGTGTTA
CTTTGTGTTACCTTAAGGGAAGAAATTTTCGCGGAATTTAATTTCGCGAA
TTGGGGCGTAATTCGCGAAATTAAATTCCGCGAAATTCGATTTTTTGTCT
TCTTCTCTTATTTTGTTGTTTTTGACCAGGTGTAACCAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037953XLOC_037953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060326-exon-scaffold_340-1575043694:113467..113478TCONS_00060326-exon-scaffold_340-1575043694:113467..113478Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1575043694:111431..112222TCONS_00060326-exon-scaffold_340-1575043694:111431..112222Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1575043694:109707..109832TCONS_00060326-exon-scaffold_340-1575043694:109707..109832Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1575043694:109469..109591TCONS_00060326-exon-scaffold_340-1575043694:109469..109591Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1575043694:109218..109364TCONS_00060326-exon-scaffold_340-1575043694:109218..109364Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1575043694:107835..109060TCONS_00060326-exon-scaffold_340-1575043694:107835..109060Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1510915933:113467..113478TCONS_00060326-exon-scaffold_340-1510915933:113467..113478Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1510915933:111431..112222TCONS_00060326-exon-scaffold_340-1510915933:111431..112222Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1510915933:109707..109832TCONS_00060326-exon-scaffold_340-1510915933:109707..109832Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1510915933:109469..109591TCONS_00060326-exon-scaffold_340-1510915933:109469..109591Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1510915933:109218..109364TCONS_00060326-exon-scaffold_340-1510915933:109218..109364Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1510915933:107835..109060TCONS_00060326-exon-scaffold_340-1510915933:107835..109060Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1491911889:113467..113478TCONS_00060326-exon-scaffold_340-1491911889:113467..113478Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1491911889:111431..112222TCONS_00060326-exon-scaffold_340-1491911889:111431..112222Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1491911889:109707..109832TCONS_00060326-exon-scaffold_340-1491911889:109707..109832Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1491911889:109469..109591TCONS_00060326-exon-scaffold_340-1491911889:109469..109591Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1491911889:109218..109364TCONS_00060326-exon-scaffold_340-1491911889:109218..109364Clytia hemisphaericaexon
TCONS_00060326-exon-scaffold_340-1491911889:107835..109060TCONS_00060326-exon-scaffold_340-1491911889:107835..109060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:107835..113478 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0807363	0	0	0	0.0396755	0.057646	0.346003	1.91329e-09	0.708319	0.71634	0.896583	8.31049e-07	1.98536	2.50853	0.350408	0.0762155	0.506727	0.0687325	2.43273	3.4226	0.00484353	0.556884	0.163936	0.376093	0.000486902	5.81499e-05	1.19411	2.4521	2.94716	1.87123
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top