TCONS_00060324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060324
Unique NameTCONS_00060324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060324 ID=TCONS_00060324|Name=TCONS_00060324|organism=Clytia hemisphaerica|type=transcript|length=3105bp
GCTTGTTCTGCTGAAAATCCAACAAAAGAGATtaactcaaaaaatataac
tcaAGAACAGATTTCAGACTCagtacaaaaatacaaaaaattacaaaaat
atatcaagttgatgaaaattattcttctttttgacttttaaaagcaAGTC
GAGCTTTCTTTGGTTTTTTACAACCAACATCAAGATTAGATGGTGCTACT
GTGTTTTCACAAGATGAAGCTTGCACCTTTGCTTCTAACTCTTCAAGCTc
agaaatcaaatcaaaatattctttctttgtcttttcatATATCTCTTGAC
CCTTTTGCAACACCACTTCGACCTTCCCATCAACTTCTCTAGCAATCGCA
GTAAAACTGCAATTTTCATGAACTCCAGCATGTCTTTTAATCCATTCTTT
TGCTTCTGTGATATTGTGTAAGTTTCGATAAATGAAAGTAACTTCATCGC
TCCCAAGAAACTCTCTAATACGATAGTTATATTCTTCTATGTCAGCATTC
GGTTGTTTCCAAGAAAACTTTGGGCATCCTTCTTCTCTCAACGACTCCAG
GTTTTTCAAGCGAGCTTTCAAAAGATTAGTTTGAAATTcatcattttgaa
aatcaatcAACAGCTTATCCAAAATAGCTTTTCTGCTAGTCactgacttt
ttgagtttttcctGACCAATAACTTGAAATTGCTGCAAAAATACAACTTG
GACATCAGTAAAATACTTATCTGAAGCGAGCATTTTCATGAGTTCACGAA
TCTTATCGTAAGTAAATGAACACCAAGAAGATTGATTCGGAAAGCCACCC
ATGTCAAGCCAATCAGCAATAGCAGAAATAACAATACTGACCAACTTCTT
GAAATTTCCAGTTCTTTGTGGCTTCTTAGCAAGTGAATAAACAATATCAT
ACGAACAGCTTTTAATTTCGGGAATAATTTTCGCATTTGACAACATTTTT
GTGAGGATATTTTCAAATTCTGTCACATTCTCAACCAAGAAAACCAAAAA
TTCGGAAAGTGGGTGTATACAGCTCATAGATTTGGTTTCCAAAGATTCAA
GGAACAGCTTGAGAGCATAATTGATCACATCATTAAAATCTGACTTTTTG
TCGGCGAGAACACGAGaacattgaaaaagatttacagCTAACTTGTACAG
TAAATGAGGCTCTTTGAAGGATTTACATATCGCCTCATAATTAGATTTGT
TTGTCCCATTGTATTCTGCACTACGCAACAGAATTTCAGCGATATTGACT
ATTTCCTCAATCTGTGAAGCTTTCAAATTTGTCTCAATTAGTCTACTCAT
GTACATGCCATAAATCATTTTGAAGCCTCTAGTTTGGCTTGCTGGTTGAC
CTTCTTcaattaagccaatcaaaattcTGCTGATGATAACAGAATAGTTG
CTTGAAATGAGATAGTCGCACAGGTAAGTTAGCTCTTCTTTGTAAGGATC
AGATTTCTCAAGCAAAGGATAAATGGTAGAAGCAATCAACAATGATATAC
CATGTCTAGGTTTACCAACACTGGCTTTGTCATCATCTTCGTCGTACTCA
AAATGTTGCGGTGTATGATCATCCCTTGTCACCAAATCGTCACTTTGTTT
GATGCAATCGATGAAAAGATTCAGAATACGAGACTTGGATGATTGTGGGC
GATCACTGTGATGCATTTCATTGAAGAACCGTGACATCAAAGAAAGGCTG
GAAGTGATATCTTTATGGTTAGCAAACTTTTCAAACCACGTCTCATAAAG
CTCATCATTGTTGCAAACAAACTCAAAGACTTCTTCCCAGAAATATGGAT
TTGCTGGATCTGAACCACTGATGAGTTGAATTGCATACCGAtcttttgag
aacatttttaaactCTGCTCAATGAGCATGTCCATGATCCCAACAATTCC
TGTTAGCTCATAAATTTTCATCACATTTGGATACCATTTAACTACTATAT
TCTCAAGAATGTGTTTATAAGTCTCTTTGAACTTTTCCCAGGGTACTGAT
TGAATAATTTTGGCAACTGGTTCTTCGCATCCGGGAGGAACACCGTACAC
GAGCGTTTTAAAGCGCTTCATTGTCCCAGCCATAATTTTGTCAATATAGA
TAAATGACATTTCTGGATCCCAAGTATTGACAAACAAATAAGCCAACTCG
TAATGTGTATTCTTACCACAGTTAAAATCATCAGCTGTAAATTTTTCCAG
TAATTCCTTCAAcagttttttgtaattttcagacTGCGAATCTACATTGT
ACTTCAGAAATTGGACACATTGCGTTGGGTTTTTAGACAAACAGAAATAT
TCGAAACGACGATTTGTTGGGACAGCTAAAAGAACAGTTCTAGTGTAACA
AGTCCAATGGTCTTCAATCCTTTTGCTTACAGCTTGCCCCCAATCTATTG
TTGTCTTTCGACGAGGTTTGGTCCATACTCCGGACCAACCCTTTCCTTTT
TGCCATTGGAGTAAATCATTTTTTATATCAATTGGTAAACCACTAAAGTC
AAGATATTTAATCATTGTTTGCATGTCAACTCCTTCTTTAAGATCAATTT
CTTCGCACACTTTGCGGTGGTgttctaaaattaaaaacaattatGATTTA
TTCAATAGTGCATGTCTTAAGAAATAAATTCAGATAATGAATGATGAATT
TCATGAACAATGGAAATGTATGGATTGTCGCATAAAGTAGTAGTAATGAT
CaaagcaaaaattatggttttaCTCCCAGGAATTTTTCTAAGCATTTTTT
TATGTCCTCATACCTGCCAAATACTCAATCTAAGATTgagtttttgaaac
tcaatccgAAATATAAAAGACATTTTCTAGCAAAATGaaacttgtttgtt
gtttaCAAACAAAAATCTCTAATATTATCtacatattcaaaatatttttg
ggggCTTCGCCCTCTGAACACCAACCAACCAAACCCCCAGCTTTATCAAT
ATACATTTGCTGATAAAAATTCCCTTTCAGGCATACTAGAAACTCAATCT
AAGTTTACAAAAACGGTCCCAGTTCAAAGtacttagaaaaatccctgtac
tcccaaataaaatatttcaatagcTTTGTTATCTGTTTTAGACTAGCAAG
CTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_340:72293..75489-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060324 ID=TCONS_00060324|Name=TCONS_00060324|organism=Clytia hemisphaerica|type=transcript|length=3197bp|location=Sequence derived from alignment at scaffold_340:72293..75489- (Clytia hemisphaerica)
GCTTGTTCTGCTGAAAATCCAACAAAAGAGATTAACTCAAAAAATATAAC
TCAAGAACAGATTTCAGACTCAGTACAAAAATACAAAAAATTACAAAAAT
ATATCAAGTTGATGAAAATTATTCTTCTTTTTGACTTTTAAAAGCAAGTC
GAGCTTTCTTTGGTTTTTTACAACCAACATCAAGATTAGATGGTGCTACT
GTGTTTTCACAAGATGAAGCTTGCACCTTTGCTTCTAACTCTTCAAGCTC
AGAAATCAAATCAAAATATTCTTTCTTTGTCTTTTCATATATCTCTTGAC
CCTTTTGCAACACCACTTCGACCTTCCCATCAACTTCTCTAGCAATCGCA
GTAAAACTGCAATTTTCATGAACTCCAGCATGTCTTTTAATCCATTCTTT
TGCTTCTGTGATATTGTGTAAGTTTCGATAAATGAAAGTAACTTCATCGC
TCCCAAGAAACTCTCTAATACGATAGTTATATTCTTCTATGTCAGCATTC
GGTTGTTTCCAAGAAAACTTTGGGCATCCTTCTTCTCTCAACGACTCCAG
GTTTTTCAAGCGAGCTTTCAAAAGATTAGTTTGAAATTCATCATTTTGAA
AATCAATCAACAGCTTATCCAAAATAGCTTTTCTGCTAGTCACTGACTTT
TTGAGTTTTTCCTGACCAATAACTTGAAATTGCTGCAAAAATACAACTTG
GACATCAGTAAAATACTTATCTGAAGCGAGCATTTTCATGAGTTCACGAA
TCTTATCGTAAGTAAATGAACACCAAGAAGATTGATTCGGAAAGCCACCC
ATGTCAAGCCAATCAGCAATAGCAGAAATAACAATACTGACCAACTTCTT
GAAATTTCCAGTTCTTTGTGGCTTCTTAGCAAGTGAATAAACAATATCAT
ACGAACAGCTTTTAATTTCGGGAATAATTTTCGCATTTGACAACATTTTT
GTGAGGATATTTTCAAATTCTGTCACATTCTCAACCAAGAAAACCAAAAA
TTCGGAAAGTGGGTGTATACAGCTCATAGATTTGGTTTCCAAAGATTCAN
ATTTTCAAATTCTGTCACATTCTCAACCAAGAAAACCAAAAATTCGGAAA
GTGGGTGTATACAGCTCATAGATTTGGTTTCCAAAGATTCAAGGAACAGC
TTGAGAGCATAATTGATCACATCATTAAAATCTGACTTTTTGTCGGCGAG
AACACGAGAACATTGAAAAAGATTTACAGCTAACTTGTACAGTAAATGAG
GCTCTTTGAAGGATTTACATATCGCCTCATAATTAGATTTGTTTGTCCCA
TTGTATTCTGCACTACGCAACAGAATTTCAGCGATATTGACTATTTCCTC
AATCTGTGAAGCTTTCAAATTTGTCTCAATTAGTCTACTCATGTACATGC
CATAAATCATTTTGAAGCCTCTAGTTTGGCTTGCTGGTTGACCTTCTTCA
ATTAAGCCAATCAAAATTCTGCTGATGATAACAGAATAGTTGCTTGAAAT
GAGATAGTCGCACAGGTAAGTTAGCTCTTCTTTGTAAGGATCAGATTTCT
CAAGCAAAGGATAAATGGTAGAAGCAATCAACAATGATATACCATGTCTA
GGTTTACCAACACTGGCTTTGTCATCATCTTCGTCGTACTCAAAATGTTG
CGGTGTATGATCATCCCTTGTCACCAAATCGTCACTTTGTTTGATGCAAT
CGATGAAAAGATTCAGAATACGAGACTTGGATGATTGTGGGCGATCACTG
TGATGCATTTCATTGAAGAACCGTGACATCAAAGAAAGGCTGGAAGTGAT
ATCTTTATGGTTAGCAAACTTTTCAAACCACGTCTCATAAAGCTCATCAT
TGTTGCAAACAAACTCAAAGACTTCTTCCCAGAAATATGGATTTGCTGGA
TCTGAACCACTGATGAGTTGAATTGCATACCGATCTTTTGAGAACATTTT
TAAACTCTGCTCAATGAGCATGTCCATGATCCCAACAATTCCTGTTAGCT
CATAAATTTTCATCACATTTGGATACCATTTAACTACTATATTCTCAAGA
ATGTGTTTATAAGTCTCTTTGAACTTTTCCCAGGGTACTGATTGAATAAT
TTTGGCAACTGGTTCTTCGCATCCGGGAGGAACACCGTACACGAGCGTTT
TAAAGCGCTTCATTGTCCCAGCCATAATTTTGTCAATATAGATAAATGAC
ATTTCTGGATCCCAAGTATTGACAAACAAATAAGCCAACTCGTAATGTGT
ATTCTTACCACAGTTAAAATCATCAGCTGTAAATTTTTCCAGTAATTCCT
TCAACAGTTTTTTGTAATTTTCAGACTGCGAATCTACATTGTACTTCAGA
AATTGGACACATTGCGTTGGGTTTTTAGACAAACAGAAATATTCGAAACG
ACGATTTGTTGGGACAGCTAAAAGAACAGTTCTAGTGTAACAAGTCCAAT
GGTCTTCAATCCTTTTGCTTACAGCTTGCCCCCAATCTATTGTTGTCTTT
CGACGAGGTTTGGTCCATACTCCGGACCAACCCTTTCCTTTTTGCCATTG
GAGTAAATCATTTTTTATATCAATTGGTAAACCACTAAAGTCAAGATATT
TAATCATTGTTTGCATGTCAACTCCTTCTTTAAGATCAATTTCTTCGCAC
ACTTTGCGGTGGTGTTCTAAAATTAAAAACAATTATGATTTATTCAATAG
TGCATGTCTTAAGAAATAAATTCAGATAATGAATGATGAATTTCATGAAC
AATGGAAATGTATGGATTGTCGCATAAAGTAGTAGTAATGATCAAAGCAA
AAATTATGGTTTTACTCCCAGGAATTTTTCTAAGCATTTTTTTATGTCCT
CATACCTGCCAAATACTCAATCTAAGATTGAGTTTTTGAAACTCAATCCG
AAATATAAAAGACATTTTCTAGCAAAATGAAACTTGTTTGTTGTTTACAA
ACAAAAATCTCTAATATTATCTACATATTCAAAATATTTTTGGGGGCTTC
GCCCTCTGAACACCAACCAACCAAACCCCCAGCTTTATCAATATACATTT
GCTGATAAAAATTCCCTTTCAGGCATACTAGAAACTCAATCTAAGTTTAC
AAAAACGGTCCCAGTTCAAAGTACTTAGAAAAATCCCTGTACTCCCAAAT
AAAATATTTCAATAGCTTTGTTATCTGTTTTAGACTAGCAAGCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037952XLOC_037952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060324-exon-scaffold_340-1575043694:74514..75489TCONS_00060324-exon-scaffold_340-1575043694:74514..75489Clytia hemisphaericaexon
TCONS_00060324-exon-scaffold_340-1575043694:72293..74421TCONS_00060324-exon-scaffold_340-1575043694:72293..74421Clytia hemisphaericaexon
TCONS_00060324-exon-scaffold_340-1510915933:74514..75489TCONS_00060324-exon-scaffold_340-1510915933:74514..75489Clytia hemisphaericaexon
TCONS_00060324-exon-scaffold_340-1510915933:72293..74421TCONS_00060324-exon-scaffold_340-1510915933:72293..74421Clytia hemisphaericaexon
TCONS_00060324-exon-scaffold_340-1491911889:74514..75489TCONS_00060324-exon-scaffold_340-1491911889:74514..75489Clytia hemisphaericaexon
TCONS_00060324-exon-scaffold_340-1491911889:72293..74421TCONS_00060324-exon-scaffold_340-1491911889:72293..74421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:72293..75489 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.871383	0.49585	1.12266	1.19688	0	0	0.169036	0	0.549642	0.791811	0.186638	0.445247	0.463953	0.169182	0.72172	0.358139	0.64668	0.733518	0.0886766	0.742969	0.747951	1.17352	0.607717	0	0.180308	0	0.841606	0.361333	0.874665	0.275556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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