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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060321 ID=TCONS_00060321|Name=TCONS_00060321|organism=Clytia hemisphaerica|type=transcript|length=1868bp
TGAGAGAGTCAATGAAAATCTAATGCCTCTTTCTCAAGatGGTAACATGA
ACCCTTCAAATGGTGGTTATCTTCTGAACAACTTATCCTTTCAATCTCAA
CTGTCTAATGAAACCTTAGCACATCAGCCACTATCTAGAATGATTAACCC
AACTCAATCAATGATGCCAACACTTATGGATCAGAGCATATCAAACATAT
CAGGACTAATGTTGATTTGAATCCATTAGCTGGTCCAGTTGTCAACAACC
TTACTAACCTTATACACCTACCAACCGATATCAGTTCGGCCCTCAGTGAA
TCATATTCTGTACCATCAACAGCAGATCCAGTTGCTAACCACCAGCCTGC
AACATTAAACAGATCGACCAGCAGTCTCTCACCTTCCGTACCATCAACAG
CAAATCCAGTTGCCAGCCACCAGCCAACACTGTCAAACTGCTCAACAATC
AGTCTCTCACCGTCTATACCATCAACAGCAAATCCAGTTGCTAACCACCA
GACTGCAACATTAAACAGATCGACCGGCAGTCCATCACCTTCTGTACCAT
CGACAGCAAATCCAGTTACCAGCCACCAGCCAGCAACGTTAAACAGATCA
ACCAGCAGTCTATCATATTGTACAGGTGCTCCATTACTGTCAGCGACAAC
TCTTCCTGGTGGATCCTCGATTTCTAGATCTCAGCCAATTAGAGCATCCG
ACATAGTTTTCACCATAAATTTAAATATAACGTATGGTGTCAACAAAGCC
CAATTAAAAGTAAGACGCTCTCAATCACCAGAGGTTCTCTACTTAAAAGT
TGAACAATTATTTCCCAATCTAATTGGGAAAAACTACCATTTAGTGAACA
GTCTTGATAACAAGTATTACATTAGACGAAACACCCCATTGCATTTGAAA
ACGTTTGTTAAAGATAATGATACCGTCGAAGTTGTTTCAGAAGATGCCTC
AATATTTAACAACCAACTAGACATACCATCCGAtttaactttcttagaga
aaatgAGAAGTGACACCTTGGAAAAGTTCACCCAAAGACAAGAACTCTTG
ATCAGGAGAACCAATTTAGTTGATGATACCATGACACAATTCAACTTCTC
AAATAGTAATATATATGTCAGGTTTGAAGGCGAGAGAGGAGAGGATCTAG
ATGGTTTATCGAGAAGTCTTTTTCCTGACTTTTGGAATGCCTTTTGTGAA
AAATATGGTATTGGTTATGATAACTATTTGCTAACCAACCCGTCACACTC
CCTATCACCAATATTGATGAAGAATTTAGGTCAAATATTAGCTTCTGGTT
ATATGATTGCTAATTACATACCACCATTTATCAACAACGCAGTACTATTT
CAGATTTTAACGGGTAACGAGCCATCTAACGATCTCACAAAGAGAGAATT
CTTGAAGTGTTTAAACAGAGAAGATTGCAAAGTCTTGCAGAGAGCATCTG
AATAATCCGAGTACGATGTCAGTTTGAAAAATTCGCTGCAAGAGTTATTT
GTGAAGTTCAGCATGAATGGGATACCAAGTCCACACTCAATTAAAGAACT
CACCAACCGATTAATTTTTCATGTAACGTTTGCTTTACCAGCATGCCTTT
TAAATTACATGAAAGAAGGTATTAAAGAAACCAACTCGATGCCGCTAAAT
GGTATTACCGAGGATCTATTTATTACTCTTATGCAGAAAATGAAACCTAC
TGGTGTTGAGGTTGCTGATCTTCTCGAACCAAAATACACTTTGTTAAAAC
GTCACGAGGAGAAAGTCTTTGAATTCGTCAAAGAGTTTGTTAAGCAGCTA
CCAACGGATGAATGCTGCAATTTCTTACGCTTTGTTACTGGATGTGAGCG
ACTGGCAAAGATTTACNN Run BLAST on NCBI transcript from alignment at scaffold_340:334759..338467+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060321 ID=TCONS_00060321|Name=TCONS_00060321|organism=Clytia hemisphaerica|type=transcript|length=3709bp|location=Sequence derived from alignment at scaffold_340:334759..338467+ (Clytia hemisphaerica)
TGAGAGAGTCAATGAAAATCTAATGCCTCTTTCTCAAGGTACCTACCATT
TAAATCTTTAATTCAATGGTCTTGATTATTCTTGATGattttatctgatt
tttttaaacataaaaaagaagCAATGAGCATCTCAAGCTTCTTCATTTCA
TGGAAATAAATTAATTGATATAAGTTGTCACTTTTGAAATAGCAATAAAA
GGTGAATAGTGCCATACCCACaatgttgaaaatttaaaaagtgccACAGT
GTTAGTTTTGAACAAATGGCTGCTTTTCATAAACTAtctattttgttctt
tttttagatGGTAACATGAACCCTTCAAATGGTGGTTATCTTCTGAACAA
CTTATCCTTTCAATCTCAACTGTCTAATGAAACCTTAGCACATCAGCCAC
TATCTAGAATGATTAACCCAACTCAATCAATGATGCCAACACTTATGGAT
CAGAGCATATCAAACATATCAGGACTAGTAGGTAAGGCTTAAAGGAAATG
TTACTGTATTATATGGGTGTCTGCGATGTATACACTAAAATCTTGCTCCA
CCAATGAATGagtaaatttatttgattggCTTATTGGTATATTGAAAGTT
GTTCTAATAGATATCATAAGTAGATCTTACATTGTATCTATAGACAAAAA
CTTCAGTGAAagcataaaaccagaaaaagctAGAACGATGTTGAATTAAA
AGAAAGGGAATGTTTAAAGAAAGTGACTTTTATGTAACACTCCTATCAAc
ctattctttaaaattatagTGTAAAAACACCAATCtgttctttataaaaa
taacaAGTTTTTAAAGATGTTATGTTAGCGCTTTAACCCATTCTatcagt
ttttttcttttaaagttgTAATAAAAGATGAAGAGTACCATACCCAcaat
cttgaaaatttaaaaatattcacaGTGTTAGTTTTGAAAGAATGTCTTCT
TTACATAAACAAtctattttgttctttttttagatGTTAACATGAACTCT
TCAAATGGTGGTTATCTTCTGAACAACTTATCATTTCAATCTCAACTGTC
TAATGAAACCTTAGCAAATCAGCCACTATCTGTAATGGTTAACCCAACTC
AATCACTGATGCCAACACTTATGGATCAGAGCGTATCAAACATATCAGGA
CTAGTAGGTGAGGAAATGTATTATATGGGGGGTCTGTGGTATACACTGAA
ATCTTGCTCCAATCAGTAAATTTATTTCATTGGCCCTATTAATATATTGA
AAGTAGTTCCAATAGATATGTCCAATTAAAAAGTAGATCTCACATTGTAT
TGtcaattaaaaatataaaaccaGAAAAGGCTAGAATGATGTTGAATAAA
AGAAAGGGAATTTTTCCCTTGAAAAGAAAGTGACTTTTTATGCATTTACA
ACTCCTATCAACTTCTACATTTAATAGTTTTGATTTCTGCCTGGGCTTGC
TTGCATCTTTAGGTTTCTCTCCATTTGTTCTAATTGTTTTTGAATGTAAA
ATTCAATTGTTATCTATTATGGATAAAAAAACATGCAAGTTTGAATATTG
TTCAACATTTTTCTCATGACTTCAGACTGAATCAAAACTTTAATTTCCTG
TGTGGAAAATCCTGATAACAcataaaacataatttttgttaaaaaagtga
TCAAGAcacgtcaaatttaaaaaaatttcaaaaaatattgttctGTACAG
TCACTGACATCATCTGGCGGATTTTTCGGTGAGAATTCGATTACCTAAcc
aaatcaattttcatttcaaaaaagtgTACCTTATTTTGTCATGGTGTGGT
CGAAACTCAACTTttaataaattcattttttgtttgaatCAGAGTTTGTT
AAGCAGCTACCAACGGATGAATGCTGCAATTTCTTACGCTTTGTTATTGG
ATGTGAGCGACTGGCAAAGATTTAGGTTGAGTTTAATGGTGCAATCTATC
GAGAGCTTATGGTACATCTTCCTCACACATGTGGGCCTACATTAGATTGT
TTGAATCAgacataaaatattatttggAAATTCTTTTCTGTATTTTTAGA
TGTTGATTTGAATCCATTAGCTGGTCCAGTTGTCAACAACCTTACTAACC
TTATACACCTACCAACCGATATCAGTTCGGCCCTCAGTGAATCATATTCT
GTACCATCAACAGCAGATCCAGTTGCTAACCACCAGCCTGCAACATTAAA
CAGATCGACCAGCAGTCTCTCACCTTCCGTACCATCAACAGCAAATCCAG
TTGCCAGCCACCAGCCAACACTGTCAAACTGCTCAACAATCAGTCTCTCA
CCGTCTATACCATCAACAGCAAATCCAGTTGCTAACCACCAGACTGCAAC
ATTAAACAGATCGACCGGCAGTCCATCACCTTCTGTACCATCGACAGCAA
ATCCAGTTACCAGCCACCAGCCAGCAACGTTAAACAGATCAACCAGCAGT
CTATCATATTGTACAGGTGCTCCATTACTGTCAGCGACAACTCTTCCTGG
TGGATCCTCGATTTCTAGATCTCAGCCAATTAGAGCATCCGACATAGTTT
TCACCATAAATTTAAATATAACGTATGGTGTCAACAAAGCCCAATTAAAA
GTAAGACGCTCTCAATCACCAGAGGTTCTCTACTTAAAAGTTGAACAATT
ATTTCCCAATCTAATTGGGAAAAACTACCATTTAGTGAACAGTCTTGATA
ACAAGTATTACATTAGACGAAACACCCCATTGCATTTGAAAACGTTTGTT
AAAGATAATGATACCGTCGAAGTTGTTTCAGAAGATGCCTCAATATTTAA
CAACCAACTAGACATACCATCCGAtttaactttcttagagaaaatgAGAA
GTGACACCTTGGAAAAGTTCACCCAAAGACAAGAACTCTTGATCAGGAGA
ACCAATTTAGTTGATGATACCATGACACAATTCAACTTCTCAAATAGTAA
TATATATGTCAGGTTTGAAGGCGAGAGAGGAGAGGATCTAGATGGTTTAT
CGAGAAGTCTTTTTCCTGACTTTTGGAATGCCTTTTGTGAAAAATATGGT
ATTGGTTATGATAACTATTTGCTAACCAACCCGTCACACTCCCTATCACC
AATATTGATGAAGAATTTAGGTCAAATATTAGCTTCTGGTTATATGATTG
CTAATTACATACCACCATTTATCAACAACGCAGTACTATTTCAGATTTTA
ACGGGTAACGAGCCATCTAACGATCTCACAAAGAGAGAATTCTTGAAGTG
TTTAAACAGAGAAGATTGCAAAGTCTTGCAGAGAGCATCTGAATAATCCG
AGTACGATGTCAGTTTGAAAAATTCGCTGCAAGAGTTATTTGTGAAGTTC
AGCATGAATGGGATACCAAGTCCACACTCAATTAAAGAACTCACCAACCG
ATTAATTTTTCATGTAACGTTTGCTTTACCAGCATGCCTTTTAAATTACA
TGAAAGAAGGTATTAAAGAAACCAACTCGATGCCGCTAAATGGTATTACC
GAGGATCTATTTATTACTCTTATGCAGAAAATGAAACCTACTGGTGTTGA
GGTTGCTGATCTTCTCGAACCAAAATACACTTTGTTAAAACGTCACGAGG
AGAAAGTCTTTGAATTCGTCAAAGAGTTTGTTAAGCAGCTACCAACGGAT
GAATGCTGCAATTTCTTACGCTTTGTTACTGGATGTGAGCGACTGGCAAA
GATTTACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060321-exon-scaffold_340-1491911889:334759..334796 | TCONS_00060321-exon-scaffold_340-1491911889:334759..334796 | Clytia hemisphaerica | exon |
| TCONS_00060321-exon-scaffold_340-1510915933:334759..334796 | TCONS_00060321-exon-scaffold_340-1510915933:334759..334796 | Clytia hemisphaerica | exon |
| TCONS_00060321-exon-scaffold_340-1575043694:334759..334796 | TCONS_00060321-exon-scaffold_340-1575043694:334759..334796 | Clytia hemisphaerica | exon |
| TCONS_00060321-exon-scaffold_340-1491911889:335066..335235 | TCONS_00060321-exon-scaffold_340-1491911889:335066..335235 | Clytia hemisphaerica | exon |
| TCONS_00060321-exon-scaffold_340-1510915933:335066..335235 | TCONS_00060321-exon-scaffold_340-1510915933:335066..335235 | Clytia hemisphaerica | exon |
| TCONS_00060321-exon-scaffold_340-1575043694:335066..335235 | TCONS_00060321-exon-scaffold_340-1575043694:335066..335235 | Clytia hemisphaerica | exon |
| TCONS_00060321-exon-scaffold_340-1491911889:336808..338467 | TCONS_00060321-exon-scaffold_340-1491911889:336808..338467 | Clytia hemisphaerica | exon |
| TCONS_00060321-exon-scaffold_340-1510915933:336808..338467 | TCONS_00060321-exon-scaffold_340-1510915933:336808..338467 | Clytia hemisphaerica | exon |
| TCONS_00060321-exon-scaffold_340-1575043694:336808..338467 | TCONS_00060321-exon-scaffold_340-1575043694:336808..338467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:334759..338467 + |
Blast
The following BLAST results are available for this feature:
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