TCONS_00060320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060320
Unique NameTCONS_00060320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060320 ID=TCONS_00060320|Name=TCONS_00060320|organism=Clytia hemisphaerica|type=transcript|length=2042bp
TGAGAGAGTCAATGAAAATCTAATGCCTCTTTCTCAAGatGGTAACATGA
ACCCTTCAAATGGTGGTTATCTTCTGAACAACTTATCCTTTCAATCTCAA
CTGTCTAATGAAACCTTAGCACATCAGCCACTATCTAGAATGATTAACCC
AACTCAATCAATGATGCCAACACTTATGGATCAGAGCATATCAAACATAT
CAGGACTAGTAGatGTTAACATGAACTCTTCAAATGGTGGTTATCTTCTG
AACAACTTATCATTTCAATCTCAACTGTCTAATGAAACCTTAGCAAATCA
GCCACTATCTGTAATGGTTAACCCAACTCAATCACTGATGCCAACACTTA
TGGATCAGAGCGTATCAAACATATCAGGACTAATGTTGATTTGAATCCAT
TAGCTGGTCCAGTTGTCAACAACCTTACTAACCTTATACACCTACCAACC
GATATCAGTTCGGCCCTCAGTGAATCATATTCTGTACCATCAACAGCAGA
TCCAGTTGCTAACCACCAGCCTGCAACATTAAACAGATCGACCAGCAGTC
TCTCACCTTCCGTACCATCAACAGCAAATCCAGTTGCCAGCCACCAGCCA
ACACTGTCAAACTGCTCAACAATCAGTCTCTCACCGTCTATACCATCAAC
AGCAAATCCAGTTGCTAACCACCAGACTGCAACATTAAACAGATCGACCG
GCAGTCCATCACCTTCTGTACCATCGACAGCAAATCCAGTTACCAGCCAC
CAGCCAGCAACGTTAAACAGATCAACCAGCAGTCTATCATATTGTACAGG
TGCTCCATTACTGTCAGCGACAACTCTTCCTGGTGGATCCTCGATTTCTA
GATCTCAGCCAATTAGAGCATCCGACATAGTTTTCACCATAAATTTAAAT
ATAACGTATGGTGTCAACAAAGCCCAATTAAAAGTAAGACGCTCTCAATC
ACCAGAGGTTCTCTACTTAAAAGTTGAACAATTATTTCCCAATCTAATTG
GGAAAAACTACCATTTAGTGAACAGTCTTGATAACAAGTATTACATTAGA
CGAAACACCCCATTGCATTTGAAAACGTTTGTTAAAGATAATGATACCGT
CGAAGTTGTTTCAGAAGATGCCTCAATATTTAACAACCAACTAGACATAC
CATCCGAtttaactttcttagagaaaatgAGAAGTGACACCTTGGAAAAG
TTCACCCAAAGACAAGAACTCTTGATCAGGAGAACCAATTTAGTTGATGA
TACCATGACACAATTCAACTTCTCAAATAGTAATATATATGTCAGGTTTG
AAGGCGAGAGAGGAGAGGATCTAGATGGTTTATCGAGAAGTCTTTTTCCT
GACTTTTGGAATGCCTTTTGTGAAAAATATGGTATTGGTTATGATAACTA
TTTGCTAACCAACCCGTCACACTCCCTATCACCAATATTGATGAAGAATT
TAGGTCAAATATTAGCTTCTGGTTATATGATTGCTAATTACATACCACCA
TTTATCAACAACGCAGTACTATTTCAGATTTTAACGGGTAACGAGCCATC
TAACGATCTCACAAAGAGAGAATTCTTGAAGTGTTTAAACAGAGAAGATT
GCAAAGTCTTGCAGAGAGCATCTGAATAATCCGAGTACGATGTCAGTTTG
AAAAATTCGCTGCAAGAGTTATTTGTGAAGTTCAGCATGAATGGGATACC
AAGTCCACACTCAATTAAAGAACTCACCAACCGATTAATTTTTCATGTAA
CGTTTGCTTTACCAGCATGCCTTTTAAATTACATGAAAGAAGGTATTAAA
GAAACCAACTCGATGCCGCTAAATGGTATTACCGAGGATCTATTTATTAC
TCTTATGCAGAAAATGAAACCTACTGGTGTTGAGGTTGCTGATCTTCTCG
AACCAAAATACACTTTGTTAAAACGTCACGAGGAGAAAGTCTTTGAATTC
GTCAAAGAGTTTGTTAAGCAGCTACCAACGGATGAATGCTGCAATTTCTT
ACGCTTTGTTACTGGATGTGAGCGACTGGCAAAGATTTACNN
Run BLAST on NCBI

transcript from alignment at scaffold_340:334759..338467+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060320 ID=TCONS_00060320|Name=TCONS_00060320|organism=Clytia hemisphaerica|type=transcript|length=3709bp|location=Sequence derived from alignment at scaffold_340:334759..338467+ (Clytia hemisphaerica)
TGAGAGAGTCAATGAAAATCTAATGCCTCTTTCTCAAGGTACCTACCATT TAAATCTTTAATTCAATGGTCTTGATTATTCTTGATGattttatctgatt tttttaaacataaaaaagaagCAATGAGCATCTCAAGCTTCTTCATTTCA TGGAAATAAATTAATTGATATAAGTTGTCACTTTTGAAATAGCAATAAAA GGTGAATAGTGCCATACCCACaatgttgaaaatttaaaaagtgccACAGT GTTAGTTTTGAACAAATGGCTGCTTTTCATAAACTAtctattttgttctt tttttagatGGTAACATGAACCCTTCAAATGGTGGTTATCTTCTGAACAA CTTATCCTTTCAATCTCAACTGTCTAATGAAACCTTAGCACATCAGCCAC TATCTAGAATGATTAACCCAACTCAATCAATGATGCCAACACTTATGGAT CAGAGCATATCAAACATATCAGGACTAGTAGGTAAGGCTTAAAGGAAATG TTACTGTATTATATGGGTGTCTGCGATGTATACACTAAAATCTTGCTCCA CCAATGAATGagtaaatttatttgattggCTTATTGGTATATTGAAAGTT GTTCTAATAGATATCATAAGTAGATCTTACATTGTATCTATAGACAAAAA CTTCAGTGAAagcataaaaccagaaaaagctAGAACGATGTTGAATTAAA AGAAAGGGAATGTTTAAAGAAAGTGACTTTTATGTAACACTCCTATCAAc ctattctttaaaattatagTGTAAAAACACCAATCtgttctttataaaaa taacaAGTTTTTAAAGATGTTATGTTAGCGCTTTAACCCATTCTatcagt ttttttcttttaaagttgTAATAAAAGATGAAGAGTACCATACCCAcaat cttgaaaatttaaaaatattcacaGTGTTAGTTTTGAAAGAATGTCTTCT TTACATAAACAAtctattttgttctttttttagatGTTAACATGAACTCT TCAAATGGTGGTTATCTTCTGAACAACTTATCATTTCAATCTCAACTGTC TAATGAAACCTTAGCAAATCAGCCACTATCTGTAATGGTTAACCCAACTC AATCACTGATGCCAACACTTATGGATCAGAGCGTATCAAACATATCAGGA CTAGTAGGTGAGGAAATGTATTATATGGGGGGTCTGTGGTATACACTGAA ATCTTGCTCCAATCAGTAAATTTATTTCATTGGCCCTATTAATATATTGA AAGTAGTTCCAATAGATATGTCCAATTAAAAAGTAGATCTCACATTGTAT TGtcaattaaaaatataaaaccaGAAAAGGCTAGAATGATGTTGAATAAA AGAAAGGGAATTTTTCCCTTGAAAAGAAAGTGACTTTTTATGCATTTACA ACTCCTATCAACTTCTACATTTAATAGTTTTGATTTCTGCCTGGGCTTGC TTGCATCTTTAGGTTTCTCTCCATTTGTTCTAATTGTTTTTGAATGTAAA ATTCAATTGTTATCTATTATGGATAAAAAAACATGCAAGTTTGAATATTG TTCAACATTTTTCTCATGACTTCAGACTGAATCAAAACTTTAATTTCCTG TGTGGAAAATCCTGATAACAcataaaacataatttttgttaaaaaagtga TCAAGAcacgtcaaatttaaaaaaatttcaaaaaatattgttctGTACAG TCACTGACATCATCTGGCGGATTTTTCGGTGAGAATTCGATTACCTAAcc aaatcaattttcatttcaaaaaagtgTACCTTATTTTGTCATGGTGTGGT CGAAACTCAACTTttaataaattcattttttgtttgaatCAGAGTTTGTT AAGCAGCTACCAACGGATGAATGCTGCAATTTCTTACGCTTTGTTATTGG ATGTGAGCGACTGGCAAAGATTTAGGTTGAGTTTAATGGTGCAATCTATC GAGAGCTTATGGTACATCTTCCTCACACATGTGGGCCTACATTAGATTGT TTGAATCAgacataaaatattatttggAAATTCTTTTCTGTATTTTTAGA TGTTGATTTGAATCCATTAGCTGGTCCAGTTGTCAACAACCTTACTAACC TTATACACCTACCAACCGATATCAGTTCGGCCCTCAGTGAATCATATTCT GTACCATCAACAGCAGATCCAGTTGCTAACCACCAGCCTGCAACATTAAA CAGATCGACCAGCAGTCTCTCACCTTCCGTACCATCAACAGCAAATCCAG TTGCCAGCCACCAGCCAACACTGTCAAACTGCTCAACAATCAGTCTCTCA CCGTCTATACCATCAACAGCAAATCCAGTTGCTAACCACCAGACTGCAAC ATTAAACAGATCGACCGGCAGTCCATCACCTTCTGTACCATCGACAGCAA ATCCAGTTACCAGCCACCAGCCAGCAACGTTAAACAGATCAACCAGCAGT CTATCATATTGTACAGGTGCTCCATTACTGTCAGCGACAACTCTTCCTGG TGGATCCTCGATTTCTAGATCTCAGCCAATTAGAGCATCCGACATAGTTT TCACCATAAATTTAAATATAACGTATGGTGTCAACAAAGCCCAATTAAAA GTAAGACGCTCTCAATCACCAGAGGTTCTCTACTTAAAAGTTGAACAATT ATTTCCCAATCTAATTGGGAAAAACTACCATTTAGTGAACAGTCTTGATA ACAAGTATTACATTAGACGAAACACCCCATTGCATTTGAAAACGTTTGTT AAAGATAATGATACCGTCGAAGTTGTTTCAGAAGATGCCTCAATATTTAA CAACCAACTAGACATACCATCCGAtttaactttcttagagaaaatgAGAA GTGACACCTTGGAAAAGTTCACCCAAAGACAAGAACTCTTGATCAGGAGA ACCAATTTAGTTGATGATACCATGACACAATTCAACTTCTCAAATAGTAA TATATATGTCAGGTTTGAAGGCGAGAGAGGAGAGGATCTAGATGGTTTAT CGAGAAGTCTTTTTCCTGACTTTTGGAATGCCTTTTGTGAAAAATATGGT ATTGGTTATGATAACTATTTGCTAACCAACCCGTCACACTCCCTATCACC AATATTGATGAAGAATTTAGGTCAAATATTAGCTTCTGGTTATATGATTG CTAATTACATACCACCATTTATCAACAACGCAGTACTATTTCAGATTTTA ACGGGTAACGAGCCATCTAACGATCTCACAAAGAGAGAATTCTTGAAGTG TTTAAACAGAGAAGATTGCAAAGTCTTGCAGAGAGCATCTGAATAATCCG AGTACGATGTCAGTTTGAAAAATTCGCTGCAAGAGTTATTTGTGAAGTTC AGCATGAATGGGATACCAAGTCCACACTCAATTAAAGAACTCACCAACCG ATTAATTTTTCATGTAACGTTTGCTTTACCAGCATGCCTTTTAAATTACA TGAAAGAAGGTATTAAAGAAACCAACTCGATGCCGCTAAATGGTATTACC GAGGATCTATTTATTACTCTTATGCAGAAAATGAAACCTACTGGTGTTGA GGTTGCTGATCTTCTCGAACCAAAATACACTTTGTTAAAACGTCACGAGG AGAAAGTCTTTGAATTCGTCAAAGAGTTTGTTAAGCAGCTACCAACGGAT GAATGCTGCAATTTCTTACGCTTTGTTACTGGATGTGAGCGACTGGCAAA GATTTACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037949XLOC_037949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060320-exon-scaffold_340-1491911889:334759..334796TCONS_00060320-exon-scaffold_340-1491911889:334759..334796Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1510915933:334759..334796TCONS_00060320-exon-scaffold_340-1510915933:334759..334796Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1575043694:334759..334796TCONS_00060320-exon-scaffold_340-1575043694:334759..334796Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1491911889:335066..335239TCONS_00060320-exon-scaffold_340-1491911889:335066..335239Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1510915933:335066..335239TCONS_00060320-exon-scaffold_340-1510915933:335066..335239Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1575043694:335066..335239TCONS_00060320-exon-scaffold_340-1575043694:335066..335239Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1491911889:335742..335911TCONS_00060320-exon-scaffold_340-1491911889:335742..335911Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1510915933:335742..335911TCONS_00060320-exon-scaffold_340-1510915933:335742..335911Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1575043694:335742..335911TCONS_00060320-exon-scaffold_340-1575043694:335742..335911Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1491911889:336808..338467TCONS_00060320-exon-scaffold_340-1491911889:336808..338467Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1510915933:336808..338467TCONS_00060320-exon-scaffold_340-1510915933:336808..338467Clytia hemisphaericaexon
TCONS_00060320-exon-scaffold_340-1575043694:336808..338467TCONS_00060320-exon-scaffold_340-1575043694:336808..338467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:334759..338467 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247761 0 0 0.111671 0 0.531682 0.020311 0 0.405 0.000161893 0.324075 0 0.0420131 0.830646 0.0656951 0.547358 0.0182379 0.392318 0.206587 0 0 0.0342521 0.0857333 0.427152 0 0.650317 0.0592424 0.511302 0.442248 2.92883e-06
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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