TCONS_00060319 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060319
Unique Name	TCONS_00060319
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2501

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_340:329116..338467+
coding sequence from alignment at scaffold_340:329116..338467+

transcript sequence

>TCONS_00060319 ID=TCONS_00060319|Name=TCONS_00060319|organism=Clytia hemisphaerica|type=transcript|length=2501bp
TGCCTGATGATTTTGAACAAAATGTGGAGCTACTCTACAATGATGTTGCA
TCAATTCGTACATTTGCCAGCAACAAAAGACAAGGAGGGCCAAAGCAAAA
GGGTAGCAAGACCAAGAAGCAGAAAGGGCCTAAACCATCGACAGTTAAGC
TAAAGATTTATCATTTACCTCCTGGGTCAGccaagccaaaattttcaaaa
ccagaTGAAACAGTACACTTACACATGAGATGTGGTTATGGATTTCCAAA
ACAATGTTACCAAGTTGGTGGTAATGGCAAAGTAAAATTCACATCACTAC
CTCTGGGTGTGGACCTAAGAACATCGATTAGGTCACTTTTTCCTAGACTT
AATGAGACTTTCTTTTTGTATActacaaaacaaaataaaacttacCAAGA
GCTTAATGTAAACAGTGAGGCAAATGAATCACCAAGGAGTAATCATCGTT
ACAAATGAGAGAGTCAATGAAAATCTAATGCCTCTTTCTCAAGatGGTAA
CATGAACCCTTCAAATGGTGGTTATCTTCTGAACAACTTATCCTTTCAAT
CTCAACTGTCTAATGAAACCTTAGCACATCAGCCACTATCTAGAATGATT
AACCCAACTCAATCAATGATGCCAACACTTATGGATCAGAGCATATCAAA
CATATCAGGACTAGTAGatGTTAACATGAACTCTTCAAATGGTGGTTATC
TTCTGAACAACTTATCATTTCAATCTCAACTGTCTAATGAAACCTTAGCA
AATCAGCCACTATCTGTAATGGTTAACCCAACTCAATCACTGATGCCAAC
ACTTATGGATCAGAGCGTATCAAACATATCAGGACTAGTAGATGTTGATT
TGAATCCATTAGCTGGTCCAGTTGTCAACAACCTTACTAACCTTATACAC
CTACCAACCGATATCAGTTCGGCCCTCAGTGAATCATATTCTGTACCATC
AACAGCAGATCCAGTTGCTAACCACCAGCCTGCAACATTAAACAGATCGA
CCAGCAGTCTCTCACCTTCCGTACCATCAACAGCAAATCCAGTTGCCAGC
CACCAGCCAACACTGTCAAACTGCTCAACAATCAGTCTCTCACCGTCTAT
ACCATCAACAGCAAATCCAGTTGCTAACCACCAGACTGCAACATTAAACA
GATCGACCGGCAGTCCATCACCTTCTGTACCATCGACAGCAAATCCAGTT
ACCAGCCACCAGCCAGCAACGTTAAACAGATCAACCAGCAGTCTATCATA
TTGTACAGGTGCTCCATTACTGTCAGCGACAACTCTTCCTGGTGGATCCT
CGATTTCTAGATCTCAGCCAATTAGAGCATCCGACATAGTTTTCACCATA
AATTTAAATATAACGTATGGTGTCAACAAAGCCCAATTAAAAGTAAGACG
CTCTCAATCACCAGAGGTTCTCTACTTAAAAGTTGAACAATTATTTCCCA
ATCTAATTGGGAAAAACTACCATTTAGTGAACAGTCTTGATAACAAGTAT
TACATTAGACGAAACACCCCATTGCATTTGAAAACGTTTGTTAAAGATAA
TGATACCGTCGAAGTTGTTTCAGAAGATGCCTCAATATTTAACAACCAAC
TAGACATACCATCCGAtttaactttcttagagaaaatgAGAAGTGACACC
TTGGAAAAGTTCACCCAAAGACAAGAACTCTTGATCAGGAGAACCAATTT
AGTTGATGATACCATGACACAATTCAACTTCTCAAATAGTAATATATATG
TCAGGTTTGAAGGCGAGAGAGGAGAGGATCTAGATGGTTTATCGAGAAGT
CTTTTTCCTGACTTTTGGAATGCCTTTTGTGAAAAATATGGTATTGGTTA
TGATAACTATTTGCTAACCAACCCGTCACACTCCCTATCACCAATATTGA
TGAAGAATTTAGGTCAAATATTAGCTTCTGGTTATATGATTGCTAATTAC
ATACCACCATTTATCAACAACGCAGTACTATTTCAGATTTTAACGGGTAA
CGAGCCATCTAACGATCTCACAAAGAGAGAATTCTTGAAGTGTTTAAACA
GAGAAGATTGCAAAGTCTTGCAGAGAGCATCTGAATAATCCGAGTACGAT
GTCAGTTTGAAAAATTCGCTGCAAGAGTTATTTGTGAAGTTCAGCATGAA
TGGGATACCAAGTCCACACTCAATTAAAGAACTCACCAACCGATTAATTT
TTCATGTAACGTTTGCTTTACCAGCATGCCTTTTAAATTACATGAAAGAA
GGTATTAAAGAAACCAACTCGATGCCGCTAAATGGTATTACCGAGGATCT
ATTTATTACTCTTATGCAGAAAATGAAACCTACTGGTGTTGAGGTTGCTG
ATCTTCTCGAACCAAAATACACTTTGTTAAAACGTCACGAGGAGAAAGTC
TTTGAATTCGTCAAAGAGTTTGTTAAGCAGCTACCAACGGATGAATGCTG
CAATTTCTTACGCTTTGTTACTGGATGTGAGCGACTGGCAAAGATTTACN
N

Run BLAST on NCBI

protein sequence of TCONS_00060319-protein

>TCONS_00060319-protein ID=TCONS_00060319-protein|Name=TCONS_00060319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
MNHQGVIIVTNERVNENLMPLSQDGNMNPSNGGYLLNNLSFQSQLSNETL
AHQPLSRMINPTQSMMPTLMDQSISNISGLVDVNMNSSNGGYLLNNLSFQ
SQLSNETLANQPLSVMVNPTQSLMPTLMDQSVSNISGLVDVDLNPLAGPV
VNNLTNLIHLPTDISSALSESYSVPSTADPVANHQPATLNRSTSSLSPSV
PSTANPVASHQPTLSNCSTISLSPSIPSTANPVANHQTATLNRSTGSPSP
SVPSTANPVTSHQPATLNRSTSSLSYCTGAPLLSATTLPGGSSISRSQPI
RASDIVFTINLNITYGVNKAQLKVRRSQSPEVLYLKVEQLFPNLIGKNYH
LVNSLDNKYYIRRNTPLHLKTFVKDNDTVEVVSEDASIFNNQLDIPSDLT
FLEKMRSDTLEKFTQRQELLIRRTNLVDDTMTQFNFSNSNIYVRFEGERG
EDLDGLSRSLFPDFWNAFCEKYGIGYDNYLLTNPSHSLSPILMKNLGQIL
ASGYMIANYIPPFINNAVLFQILTGNEPSNDLTKREFLKCLNREDCKVLQ
RASE

Run BLAST on NCBI

transcript from alignment at scaffold_340:329116..338467+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060319 ID=TCONS_00060319|Name=TCONS_00060319|organism=Clytia hemisphaerica|type=transcript|length=9352bp|location=Sequence derived from alignment at scaffold_340:329116..338467+ (Clytia hemisphaerica)
TGCCTGATGATTTTGAACAAAATGTGGAGCTACTCTACAATGATGTTGCA
TCAATTCGTACATTTGCCAGCAACAAAAGACAAGGAGGTAAGAATATATA
TTTCACTAACCATCAAGACCCATTTCTTTTCAGTCTAGGACTGTATTTAA
TTAAGAGACAACCCTAACTAAGTGTGTCCGTTTATTAAAAGACATTGATT
AAAGGACAGTCTCTACAGTAAATCAGTTCGGCAAATTGCATAGAATGACA
GCGCTGCATAATTCCACAGCTTTAGCGCTGTCGAATTCTGCAGCGTTGTC
TAATATCGCAGCTTTAACCATTGTCAAATTTGACAACGCTTCTCTTTTAA
CCAAGAACGGGGTCACAGGGTGTGTTTTTAGAGTCAGGGTCAATTAACAT
AATACATATATGATAAAGATACAATATAGCATATTATTCTTACGGGGTCT
CGAAATCATGTGTATTTTGTAGGATCCAAAAGTAAGCTTTTCACCCCAGG
ATTTTAATTTCCTACGTCTAGGGATTTTTCACAATCATCCTTGGCAGTAA
GGCCACTTTGTCCGAAAAACCATTAATTTGTTCAAAATAGAGAAGTTTTG
CCTGATTTTGCTTGTTGTGATTGTACAAAACAGGTCCAATTATTTATAAT
TCTCAATCAGAAGTATTGATTGGAAGCGTTGTGTAGAATAGCAGCGCACT
TGTTACATTTCATGTGGAAGCGTTGCAAAAACAGCAGCATTGCAGAATTT
TGCAGCGGCTGTCATTCTATGCAACTTATGCCGAACTGAAATTAAGGGAC
AGGCACGTACAAATCTAGAGATATTCGCAGTTTAGTCCAGGTGAATCGAA
CAGttcaatcatcaaaataatcCAATTTTATTGGACCCGATTCAAATAGA
ATGATAGGTGTTCGATTACCCAAAACAACCtctctgtttttatttttagt
aaaaCTCTTTATGGGTCAAATTCCAGTGTTTTCAGGTGTTTCCGAAATGA
tgtaatcttgacttatgcatatcaagaATAACTTACCAAACTCATCGAAT
ACCAATCAAACCCCAttaaacatcaatcgaactctatcaaatcaatcgaa
ctctatcgaaccaatcaaacctcttcaaacaaaaaaacagtGATCGAACC
AAGcaagaaattttcgtaaaattcaataggtgttcgattgggttcggtaa
tcgaacaccTATCATTCCATTCTGTTCGTAATCGATAAAGTTCGATGTTT
CAATTACAAAAatcggttcgatagggttcgatcAACATCGCCTGGTTAAG
TTTTTTGTCCTTACTTAACCTTAAGAGACAGAGTGTCCTTTAATTTAGAG
AATGTCCCTTAATTTGAAGATGTCCCTTAATTAGGTACAGTTCTAGACTG
TTTTTAGCACTTTACTTTTTACCCGATATACGAAAATCATTATAGCTGTG
TTCACAATATTCCCAAATGAACCAGACAATTTTTACCTCGTTTACTCCCT
TAAGGAACTCATTTTTGCATAACTTGTTTTTGTATCTCACAGACATTTTT
AAAGCTTATCAAGTACAATAAAGGATTATACCCTAAAATAAGagaatacc
caaaatgtgatgACCTTGCGTGGGAAAAGAATCACTTTTGATTTCTACAG
AAAATGTGTCGATCCGNTGTTAAAACCAAACAAATTATAAATTTAtctct
aaaaatgttttttttttattgcagATTGCCTGATGATTTTGAACAAAATG
TGGAGCTACTCTACAATGATGTTGCATCAATTCGTACATTTGCCAGCAAC
AAAAGACAAGGAGGTAAGAATATATATTTCACTAACCATCAAGACCCATT
TCTTTTCAGTCTAGGACTGTATTTAATTAAGAGACAACCCTAACTAAGTG
TGTCCGTTTATTAAAAGACATTGATTAAAGGACAGTCTCTACAGTAAATC
AGTTCGGCAAATTGCATAGAATGACAGCGCTGCATAATTCCACAGCTTTA
GCGCTGTCGAATTCTGCAGCGTTGTCTAATATCGCAGCTTTAACCATTGT
CAAATTTGACAACGCTTCTCTTTTAACCAAGAACGGGGTCACAGGGTGTG
TTTTTAGAGTCAGGGTCAATTAACATAATACATATATGATAAAGATACAA
TATAGCATATTATTCTTACGGGGTCTCGAAATCATGTGTATTTTGTAGGA
TCCAAAAGTAAGCTTTTCACCCCAGGATTTTAATTTCCTACGTCTAGGGA
TTTTTCACAATCATCCTTGGCAGTAAGGCCACTTTGTCCGAAAAACCGTT
AATTTGTTCAAAATAGAGAAGTTTTGCCTGATTTTGCTTCTTGTGATTGT
ACAAAACAGGTCCAATTATTTATAATTCTCAATCAGAAGTTTTGATTGGA
AGCATTGTGTAGAATAGCAGCGCACTTGTTGCATTTCATGTGGAAGCGTT
GCAAAAAACAGCAGCATTGCAGAATTTTGCAGCGGCTGTCATTCTATGCA
ACTTATGCCGAACTGAAATTAAGGGACAGGCACGTACAAATCTAGAGATA
TTTGCAGTTTAGTCCAGGTGAATCGAACAGTTCAATCATCGAAATAATCC
AATTTTATTGGACCCGATTCAAATAGAATGATAGGTGTTTGATTACCCAA
AACAACCtctgtgtttttatttttagtaaaaCTCTTTATGGGTCAAATTC
CAGTGTTTTCAGGTGTTTCCGAAATGAtgtaatcttgacttatgcatatc
aagaATAACTTACCAAACTCATCGAATACCAATCAAACCCCAttaaacat
caatcgaactctatcaaatcaatcgaactctatcgaaccaatcaaacctc
ttcaaacaaaaaaacagtGATCGAACCAAGcaagaaattttcgtaaaatt
caataggtgttcgattgggttcggtaatcgaacaccTATCATTCCATTCT
GTTCGTAATCGATAAAGTTTGATGTTTCAATTACAAAAatcggttcgata
gggttcgatcAACATCGCCTGGTTAAGTTTTTTGTCCCTTACTTAACCTT
AAGAGACAGATTGTCCTTTAATTTAGAAACTGTCCCTTAATTTGAATATG
TCCCTTAATTAGGTACAGTTCTAGACTGTTTTTAGCACTTTACTTTTTAC
CCGATATACGAAAATCATTATAGCTGTGTTCACAATATTCCCAAATGAAC
CAGACAATTTTTACCTCGTTTACTCCCTTAAGGAACTCATTTTTGCATAA
CTTGTTTTTGTATCTCACAGACATTTTTAAAGCTTATCAAATACAATAAA
GGATTATACCCTAAAATAAGagaatacccaaaatgtgatgACCTTGCGTG
GGAAAAGAATCACTTTTGATTTCTACAGAAAATGTGTCGATCCATTTGAT
TACCAATAACTTTATAGATCTTACCGATAAGAGTAGAATTGTTTACTAAT
AGAATGGTTTGTATGGATAAGAAATTTATATCAGTAACTGTTTTTAGACA
TGTATCAAATTCaagggaaatttgaatgaatttgattgattttggctgta
ttttattcaattgatatctacatacaTCACATATGATACATCACattatt
tgaaattatattgtttatCAGTCTGTCAGGTttaatttgatttctattta
ttTCAGGGCCAAAGCAAAAGGGTAGCAAGACCAAGAAGCAGAAAGGGCCT
AAACCATCGACAGTTAAGCTAAAGATTTATCATTTACCTCCTGGGTCAGc
caagccaaaattttcaaaaccagaTGAAACAGTACACTTACACATGAGAT
GTGGTTATGGTAAGcttaagttttttcaaattttgaaattatgtgGGAGC
TGCTTATTAATCTAAGTACCACTAGATAATTGAAGTAATGTCATTTTAAT
AAAAGGTTTGATTTTGATAAATTCATAATTATTTCATCGAAACTTTGAGC
GTGGTTTTTATTATTTGCTGACTTGTATGTATGTatcaagaaaattgata
aaaattttcgaagtttgaaaattttcgaaaatcgatcATTACAgatgggt
tggtgtaatttaagatgcgcGATCTAACGGTTTatgattcacgatgcacg
atccacatgcataaagtatgctgattattcctaataattgtCATGAAACT
TATACAacaattctaaaacaatggcataattttttctcgcttttgtttgc
cacggtaaatttatgcaataaaaaagaaattaggaGTCATGGAGTGCTAc
tgcaattttttttccgtcagcagacgcagacctgatttagtggccgaaga
cctgattttACATTTCTTCACGATTTAGCGGCTGAAGACCTGTAGAATTT
AGCcatttttcttcaaacaaaTATGTTATTAGCGGTCGAAGACCTGTtta
gaaatcttttgatttcgCAGAAATTTTCCAAACcaaattgtttttcaaac
tGAAAAGCTTTGTTGAAGCTACTGCATTGCAAGTATCGTTTGGTAAAATG
CGCGCGCGATCTAGTAAATTGGTCCCTATATGGCTAAATTTTACAGGTAT
TCCAccgctaaatcaggtcttcAGCCGGTAAGAAAATCTgtgaatcaaaa
attttaaggtCTTCGGCCATTAGCGCAGGTCTTTGGCTGCTAAATCGTGA
AGAAATGTAAAATCAGATAAAATCATCAAGAATAATCGGCTGCTAAATCA
GGTCAGCGtccgctgacggaaaaaaaaattgcagtGCTACTTTGGCACAT
GCAAAGTTTTGTTCATTGCCAGGCCTGTAATTGAGCTTCAacgaatgaaa
gtttgtaagctctctaaatattttatcatgattagcataattGGGGCATA
ATTAtacatgaattaacatattttatgcatggATTGCGAATTGTGCATCG
TAAATCATTAGATTGTGCATCTGAAATTACACCANAacgaatgaaagttt
gtaaactctctaaatattttatcatgattagcataattGGGGCATAATTA
tacatgaattaacatattttatgcatggATTGCGAATTGTGCATCGTAAA
TCATTAGATTGTGCATCTGAAATTACACCAACTCATTACGGATGTGACAT
GTTTTGAGTGTTCAATTCGTATCAACTTTGACTGATTAAATACCTGTTTT
TAAAAGCATAAtctctttaaaaaatgtttttgcgaAAATAAGCATTTGAC
AAGCATATTCAAGCTTCATTCCAAAGTAAGAATAAGCATAACCAAGTTTA
AGAAGACTGTATGCGTATAAAAACATGTACTcacaatttttgtgattttc
ttagGATTCTAAAATTCAATTCATTAAAAGTTTTGCCATTTAATAAAGTT
ATATACTTCAGTAATTAAACTGTTCTACTAATTTAGACTGGTTTgtatat
cttttttttctttgtcatttcaATTCAGGATTTCCAAAACAATGTTACCA
AGTTGGTGGTAATGGCAAAGTAAAATTCACATCACTACCTCTGGGTGTGG
ACCTAAGAACATCGATTAGGTCACTTTTTCCTAGACTTAATGAGACTTTC
TTTTTGTATActacaaaacaaaataaaacttacCAAGAGCTTAATGTAAA
CAGTGAGGCAAATGAATCACCAAGGAGTAATCATCGTTACAAATGAGAGA
GTCAATGAAAATCTAATGCCTCTTTCTCAAGGTACCTACCATTTAAATCT
TTAATTCAATGGTCTTGATTATTCTTGATGattttatctgatttttttaa
acataaaaaagaagCAATGAGCATCTCAAGCTTCTTCATTTCATGGAAAT
AAATTAATTGATATAAGTTGTCACTTTTGAAATAGCAATAAAAGGTGAAT
AGTGCCATACCCACaatgttgaaaatttaaaaagtgccACAGTGTTAGTT
TTGAACAAATGGCTGCTTTTCATAAACTAtctattttgttctttttttag
atGGTAACATGAACCCTTCAAATGGTGGTTATCTTCTGAACAACTTATCC
TTTCAATCTCAACTGTCTAATGAAACCTTAGCACATCAGCCACTATCTAG
AATGATTAACCCAACTCAATCAATGATGCCAACACTTATGGATCAGAGCA
TATCAAACATATCAGGACTAGTAGGTAAGGCTTAAAGGAAATGTTACTGT
ATTATATGGGTGTCTGCGATGTATACACTAAAATCTTGCTCCACCAATGA
ATGagtaaatttatttgattggCTTATTGGTATATTGAAAGTTGTTCTAA
TAGATATCATAAGTAGATCTTACATTGTATCTATAGACAAAAACTTCAGT
GAAagcataaaaccagaaaaagctAGAACGATGTTGAATTAAAAGAAAGG
GAATGTTTAAAGAAAGTGACTTTTATGTAACACTCCTATCAAcctattct
ttaaaattatagTGTAAAAACACCAATCtgttctttataaaaataacaAG
TTTTTAAAGATGTTATGTTAGCGCTTTAACCCATTCTatcagtttttttc
ttttaaagttgTAATAAAAGATGAAGAGTACCATACCCAcaatcttgaaa
atttaaaaatattcacaGTGTTAGTTTTGAAAGAATGTCTTCTTTACATA
AACAAtctattttgttctttttttagatGTTAACATGAACTCTTCAAATG
GTGGTTATCTTCTGAACAACTTATCATTTCAATCTCAACTGTCTAATGAA
ACCTTAGCAAATCAGCCACTATCTGTAATGGTTAACCCAACTCAATCACT
GATGCCAACACTTATGGATCAGAGCGTATCAAACATATCAGGACTAGTAG
GTGAGGAAATGTATTATATGGGGGGTCTGTGGTATACACTGAAATCTTGC
TCCAATCAGTAAATTTATTTCATTGGCCCTATTAATATATTGAAAGTAGT
TCCAATAGATATGTCCAATTAAAAAGTAGATCTCACATTGTATTGtcaat
taaaaatataaaaccaGAAAAGGCTAGAATGATGTTGAATAAAAGAAAGG
GAATTTTTCCCTTGAAAAGAAAGTGACTTTTTATGCATTTACAACTCCTA
TCAACTTCTACATTTAATAGTTTTGATTTCTGCCTGGGCTTGCTTGCATC
TTTAGGTTTCTCTCCATTTGTTCTAATTGTTTTTGAATGTAAAATTCAAT
TGTTATCTATTATGGATAAAAAAACATGCAAGTTTGAATATTGTTCAACA
TTTTTCTCATGACTTCAGACTGAATCAAAACTTTAATTTCCTGTGTGGAA
AATCCTGATAACAcataaaacataatttttgttaaaaaagtgaTCAAGAc
acgtcaaatttaaaaaaatttcaaaaaatattgttctGTACAGTCACTGA
CATCATCTGGCGGATTTTTCGGTGAGAATTCGATTACCTAAccaaatcaa
ttttcatttcaaaaaagtgTACCTTATTTTGTCATGGTGTGGTCGAAACT
CAACTTttaataaattcattttttgtttgaatCAGAGTTTGTTAAGCAGC
TACCAACGGATGAATGCTGCAATTTCTTACGCTTTGTTATTGGATGTGAG
CGACTGGCAAAGATTTAGGTTGAGTTTAATGGTGCAATCTATCGAGAGCT
TATGGTACATCTTCCTCACACATGTGGGCCTACATTAGATTGTTTGAATC
AgacataaaatattatttggAAATTCTTTTCTGTATTTTTAGATGTTGAT
TTGAATCCATTAGCTGGTCCAGTTGTCAACAACCTTACTAACCTTATACA
CCTACCAACCGATATCAGTTCGGCCCTCAGTGAATCATATTCTGTACCAT
CAACAGCAGATCCAGTTGCTAACCACCAGCCTGCAACATTAAACAGATCG
ACCAGCAGTCTCTCACCTTCCGTACCATCAACAGCAAATCCAGTTGCCAG
CCACCAGCCAACACTGTCAAACTGCTCAACAATCAGTCTCTCACCGTCTA
TACCATCAACAGCAAATCCAGTTGCTAACCACCAGACTGCAACATTAAAC
AGATCGACCGGCAGTCCATCACCTTCTGTACCATCGACAGCAAATCCAGT
TACCAGCCACCAGCCAGCAACGTTAAACAGATCAACCAGCAGTCTATCAT
ATTGTACAGGTGCTCCATTACTGTCAGCGACAACTCTTCCTGGTGGATCC
TCGATTTCTAGATCTCAGCCAATTAGAGCATCCGACATAGTTTTCACCAT
AAATTTAAATATAACGTATGGTGTCAACAAAGCCCAATTAAAAGTAAGAC
GCTCTCAATCACCAGAGGTTCTCTACTTAAAAGTTGAACAATTATTTCCC
AATCTAATTGGGAAAAACTACCATTTAGTGAACAGTCTTGATAACAAGTA
TTACATTAGACGAAACACCCCATTGCATTTGAAAACGTTTGTTAAAGATA
ATGATACCGTCGAAGTTGTTTCAGAAGATGCCTCAATATTTAACAACCAA
CTAGACATACCATCCGAtttaactttcttagagaaaatgAGAAGTGACAC
CTTGGAAAAGTTCACCCAAAGACAAGAACTCTTGATCAGGAGAACCAATT
TAGTTGATGATACCATGACACAATTCAACTTCTCAAATAGTAATATATAT
GTCAGGTTTGAAGGCGAGAGAGGAGAGGATCTAGATGGTTTATCGAGAAG
TCTTTTTCCTGACTTTTGGAATGCCTTTTGTGAAAAATATGGTATTGGTT
ATGATAACTATTTGCTAACCAACCCGTCACACTCCCTATCACCAATATTG
ATGAAGAATTTAGGTCAAATATTAGCTTCTGGTTATATGATTGCTAATTA
CATACCACCATTTATCAACAACGCAGTACTATTTCAGATTTTAACGGGTA
ACGAGCCATCTAACGATCTCACAAAGAGAGAATTCTTGAAGTGTTTAAAC
AGAGAAGATTGCAAAGTCTTGCAGAGAGCATCTGAATAATCCGAGTACGA
TGTCAGTTTGAAAAATTCGCTGCAAGAGTTATTTGTGAAGTTCAGCATGA
ATGGGATACCAAGTCCACACTCAATTAAAGAACTCACCAACCGATTAATT
TTTCATGTAACGTTTGCTTTACCAGCATGCCTTTTAAATTACATGAAAGA
AGGTATTAAAGAAACCAACTCGATGCCGCTAAATGGTATTACCGAGGATC
TATTTATTACTCTTATGCAGAAAATGAAACCTACTGGTGTTGAGGTTGCT
GATCTTCTCGAACCAAAATACACTTTGTTAAAACGTCACGAGGAGAAAGT
CTTTGAATTCGTCAAAGAGTTTGTTAAGCAGCTACCAACGGATGAATGCT
GCAATTTCTTACGCTTTGTTACTGGATGTGAGCGACTGGCAAAGATTTAC
NN

Coding sequence (CDS) from alignment at scaffold_340:329116..338467+

>TCONS_00060319 ID=TCONS_00060319|Name=TCONS_00060319|organism=Clytia hemisphaerica|type=CDS|length=6660bp|location=Sequence derived from alignment at scaffold_340:329116..338467+ (Clytia hemisphaerica)
ATGAATCACCAAGGAGTAATCATCGTTACAAATGAGAGAGTCAATGAAAA
TCTAATGCCTCTTTCTCAAGatGGTAACATGAACCCTTCAAATGGTGGTT
ATCTTCTGAACAACTTATCCTTTCAATCTCAACTGTCTAATGAAACCTTA
GCACATCAGCCACTATCTAGAATGATTAACCCAACTCAATCAATGATGCC
AACACTTATGGATCAGAGCATATCAAACATATCAGGACTAGTAGatGTTA
ACATGAACTCTTCAAATGGTGGTTATCTTCTGAACAACTTATCATTTCAA
TCTCAACTGTCTAATGAAACCTTAGCAAATCAGCCACTATCTGTAATGGT
TAACCCAACTCAATCACTGATGCCAACACTTATGGATCAGAGCGTATCAA
ACATATCAGGACTAGTAGATGTTGATTTGAATCCATTAGCTGGTCCAGTT
GTCAACAACCTTACTAACCTTATACACCTACCAACCGATATCAGTTCGGC
CCTCAGTGAATCATATTCTGTACCATCAACAGCAGATCCAGTTGCTAACC
ACCAGCCTGCAACATTAAACAGATCGACCAGCAGTCTCTCACCTTCCGTA
CCATCAACAGCAAATCCAGTTGCCAGCCACCAGCCAACACTGTCAAACTG
CTCAACAATCAGTCTCTCACCGTCTATACCATCAACAGCAAATCCAGTTG
CTAACCACCAGACTGCAACATTAAACAGATCGACCGGCAGTCCATCACCT
TCTGTACCATCGACAGCAAATCCAGTTACCAGCCACCAGCCAGCAACGTT
AAACAGATCAACCAGCAGTCTATCATATTGTACAGGTGCTCCATTACTGT
CAGCGACAACTCTTCCTGGTGGATCCTCGATTTCTAGATCTCAGCCAATT
AGAGCATCCGACATAGTTTTCACCATAAATTTAAATATAACGTATGGTGT
CAACAAAGCCCAATTAAAAGTAAGACGCTCTCAATCACCAGAGGTTCTCT
ACTTAAAAGTTGAACAATTATTTCCCAATCTAATTGGGAAAAACTACCAT
TTAGTGAACAGTCTTGATAACAAGTATTACATTAGACGAAACACCCCATT
GCATTTGAAAACGTTTGTTAAAGATAATGATACCGTCGAAGTTGTTTCAG
AAGATGCCTCAATATTTAACAACCAACTAGACATACCATCCGAtttaact
ttcttagagaaaatgAGAAGTGACACCTTGGAAAAGTTCACCCAAAGACA
AGAACTCTTGATCAGGAGAACCAATTTAGTTGATGATACCATGACACAAT
TCAACTTCTCAAATAGTAATATATATGTCAGGTTTGAAGGCGAGAGAGGA
GAGGATCTAGATGGTTTATCGAGAAGTCTTTTTCCTGACTTTTGGAATGC
CTTTTGTGAAAAATATGGTATTGGTTATGATAACTATTTGCTAACCAACC
CGTCACACTCCCTATCACCAATATTGATGAAGAATTTAGGTCAAATATTA
GCTTCTGGTTATATGATTGCTAATTACATACCACCATTTATCAACAACGC
AGTACTATTTCAGATTTTAACGGGTAACGAGCCATCTAACGATCTCACAA
AGAGAGAATTCTTGAAGTGTTTAAACAGAGAAGATTGCAAAGTCTTGCAG
AGAGCATCTGAATAAATGAATCACCAAGGAGTAATCATCGTTACAAATGA
GAGAGTCAATGAAAATCTAATGCCTCTTTCTCAAGatGGTAACATGAACC
CTTCAAATGGTGGTTATCTTCTGAACAACTTATCCTTTCAATCTCAACTG
TCTAATGAAACCTTAGCACATCAGCCACTATCTAGAATGATTAACCCAAC
TCAATCAATGATGCCAACACTTATGGATCAGAGCATATCAAACATATCAG
GACTAGTAGatGTTAACATGAACTCTTCAAATGGTGGTTATCTTCTGAAC
AACTTATCATTTCAATCTCAACTGTCTAATGAAACCTTAGCAAATCAGCC
ACTATCTGTAATGGTTAACCCAACTCAATCACTGATGCCAACACTTATGG
ATCAGAGCGTATCAAACATATCAGGACTAGTAGATGTTGATTTGAATCCA
TTAGCTGGTCCAGTTGTCAACAACCTTACTAACCTTATACACCTACCAAC
CGATATCAGTTCGGCCCTCAGTGAATCATATTCTGTACCATCAACAGCAG
ATCCAGTTGCTAACCACCAGCCTGCAACATTAAACAGATCGACCAGCAGT
CTCTCACCTTCCGTACCATCAACAGCAAATCCAGTTGCCAGCCACCAGCC
AACACTGTCAAACTGCTCAACAATCAGTCTCTCACCGTCTATACCATCAA
CAGCAAATCCAGTTGCTAACCACCAGACTGCAACATTAAACAGATCGACC
GGCAGTCCATCACCTTCTGTACCATCGACAGCAAATCCAGTTACCAGCCA
CCAGCCAGCAACGTTAAACAGATCAACCAGCAGTCTATCATATTGTACAG
GTGCTCCATTACTGTCAGCGACAACTCTTCCTGGTGGATCCTCGATTTCT
AGATCTCAGCCAATTAGAGCATCCGACATAGTTTTCACCATAAATTTAAA
TATAACGTATGGTGTCAACAAAGCCCAATTAAAAGTAAGACGCTCTCAAT
CACCAGAGGTTCTCTACTTAAAAGTTGAACAATTATTTCCCAATCTAATT
GGGAAAAACTACCATTTAGTGAACAGTCTTGATAACAAGTATTACATTAG
ACGAAACACCCCATTGCATTTGAAAACGTTTGTTAAAGATAATGATACCG
TCGAAGTTGTTTCAGAAGATGCCTCAATATTTAACAACCAACTAGACATA
CCATCCGAtttaactttcttagagaaaatgAGAAGTGACACCTTGGAAAA
GTTCACCCAAAGACAAGAACTCTTGATCAGGAGAACCAATTTAGTTGATG
ATACCATGACACAATTCAACTTCTCAAATAGTAATATATATGTCAGGTTT
GAAGGCGAGAGAGGAGAGGATCTAGATGGTTTATCGAGAAGTCTTTTTCC
TGACTTTTGGAATGCCTTTTGTGAAAAATATGGTATTGGTTATGATAACT
ATTTGCTAACCAACCCGTCACACTCCCTATCACCAATATTGATGAAGAAT
TTAGGTCAAATATTAGCTTCTGGTTATATGATTGCTAATTACATACCACC
ATTTATCAACAACGCAGTACTATTTCAGATTTTAACGGGTAACGAGCCAT
CTAACGATCTCACAAAGAGAGAATTCTTGAAGTGTTTAAACAGAGAAGAT
TGCAAAGTCTTGCAGAGAGCATCTGAATAAATGAATCACCAAGGAGTAAT
CATCGTTACAAATGAGAGAGTCAATGAAAATCTAATGCCTCTTTCTCAAG
atGGTAACATGAACCCTTCAAATGGTGGTTATCTTCTGAACAACTTATCC
TTTCAATCTCAACTGTCTAATGAAACCTTAGCACATCAGCCACTATCTAG
AATGATTAACCCAACTCAATCAATGATGCCAACACTTATGGATCAGAGCA
TATCAAACATATCAGGACTAGTAGatGTTAACATGAACTCTTCAAATGGT
GGTTATCTTCTGAACAACTTATCATTTCAATCTCAACTGTCTAATGAAAC
CTTAGCAAATCAGCCACTATCTGTAATGGTTAACCCAACTCAATCACTGA
TGCCAACACTTATGGATCAGAGCGTATCAAACATATCAGGACTAGTAGAT
GTTGATTTGAATCCATTAGCTGGTCCAGTTGTCAACAACCTTACTAACCT
TATACACCTACCAACCGATATCAGTTCGGCCCTCAGTGAATCATATTCTG
TACCATCAACAGCAGATCCAGTTGCTAACCACCAGCCTGCAACATTAAAC
AGATCGACCAGCAGTCTCTCACCTTCCGTACCATCAACAGCAAATCCAGT
TGCCAGCCACCAGCCAACACTGTCAAACTGCTCAACAATCAGTCTCTCAC
CGTCTATACCATCAACAGCAAATCCAGTTGCTAACCACCAGACTGCAACA
TTAAACAGATCGACCGGCAGTCCATCACCTTCTGTACCATCGACAGCAAA
TCCAGTTACCAGCCACCAGCCAGCAACGTTAAACAGATCAACCAGCAGTC
TATCATATTGTACAGGTGCTCCATTACTGTCAGCGACAACTCTTCCTGGT
GGATCCTCGATTTCTAGATCTCAGCCAATTAGAGCATCCGACATAGTTTT
CACCATAAATTTAAATATAACGTATGGTGTCAACAAAGCCCAATTAAAAG
TAAGACGCTCTCAATCACCAGAGGTTCTCTACTTAAAAGTTGAACAATTA
TTTCCCAATCTAATTGGGAAAAACTACCATTTAGTGAACAGTCTTGATAA
CAAGTATTACATTAGACGAAACACCCCATTGCATTTGAAAACGTTTGTTA
AAGATAATGATACCGTCGAAGTTGTTTCAGAAGATGCCTCAATATTTAAC
AACCAACTAGACATACCATCCGAtttaactttcttagagaaaatgAGAAG
TGACACCTTGGAAAAGTTCACCCAAAGACAAGAACTCTTGATCAGGAGAA
CCAATTTAGTTGATGATACCATGACACAATTCAACTTCTCAAATAGTAAT
ATATATGTCAGGTTTGAAGGCGAGAGAGGAGAGGATCTAGATGGTTTATC
GAGAAGTCTTTTTCCTGACTTTTGGAATGCCTTTTGTGAAAAATATGGTA
TTGGTTATGATAACTATTTGCTAACCAACCCGTCACACTCCCTATCACCA
ATATTGATGAAGAATTTAGGTCAAATATTAGCTTCTGGTTATATGATTGC
TAATTACATACCACCATTTATCAACAACGCAGTACTATTTCAGATTTTAA
CGGGTAACGAGCCATCTAACGATCTCACAAAGAGAGAATTCTTGAAGTGT
TTAAACAGAGAAGATTGCAAAGTCTTGCAGAGAGCATCTGAATAAATGAA
TCACCAAGGAGTAATCATCGTTACAAATGAGAGAGTCAATGAAAATCTAA
TGCCTCTTTCTCAAGatGGTAACATGAACCCTTCAAATGGTGGTTATCTT
CTGAACAACTTATCCTTTCAATCTCAACTGTCTAATGAAACCTTAGCACA
TCAGCCACTATCTAGAATGATTAACCCAACTCAATCAATGATGCCAACAC
TTATGGATCAGAGCATATCAAACATATCAGGACTAGTAGatGTTAACATG
AACTCTTCAAATGGTGGTTATCTTCTGAACAACTTATCATTTCAATCTCA
ACTGTCTAATGAAACCTTAGCAAATCAGCCACTATCTGTAATGGTTAACC
CAACTCAATCACTGATGCCAACACTTATGGATCAGAGCGTATCAAACATA
TCAGGACTAGTAGATGTTGATTTGAATCCATTAGCTGGTCCAGTTGTCAA
CAACCTTACTAACCTTATACACCTACCAACCGATATCAGTTCGGCCCTCA
GTGAATCATATTCTGTACCATCAACAGCAGATCCAGTTGCTAACCACCAG
CCTGCAACATTAAACAGATCGACCAGCAGTCTCTCACCTTCCGTACCATC
AACAGCAAATCCAGTTGCCAGCCACCAGCCAACACTGTCAAACTGCTCAA
CAATCAGTCTCTCACCGTCTATACCATCAACAGCAAATCCAGTTGCTAAC
CACCAGACTGCAACATTAAACAGATCGACCGGCAGTCCATCACCTTCTGT
ACCATCGACAGCAAATCCAGTTACCAGCCACCAGCCAGCAACGTTAAACA
GATCAACCAGCAGTCTATCATATTGTACAGGTGCTCCATTACTGTCAGCG
ACAACTCTTCCTGGTGGATCCTCGATTTCTAGATCTCAGCCAATTAGAGC
ATCCGACATAGTTTTCACCATAAATTTAAATATAACGTATGGTGTCAACA
AAGCCCAATTAAAAGTAAGACGCTCTCAATCACCAGAGGTTCTCTACTTA
AAAGTTGAACAATTATTTCCCAATCTAATTGGGAAAAACTACCATTTAGT
GAACAGTCTTGATAACAAGTATTACATTAGACGAAACACCCCATTGCATT
TGAAAACGTTTGTTAAAGATAATGATACCGTCGAAGTTGTTTCAGAAGAT
GCCTCAATATTTAACAACCAACTAGACATACCATCCGAtttaactttctt
agagaaaatgAGAAGTGACACCTTGGAAAAGTTCACCCAAAGACAAGAAC
TCTTGATCAGGAGAACCAATTTAGTTGATGATACCATGACACAATTCAAC
TTCTCAAATAGTAATATATATGTCAGGTTTGAAGGCGAGAGAGGAGAGGA
TCTAGATGGTTTATCGAGAAGTCTTTTTCCTGACTTTTGGAATGCCTTTT
GTGAAAAATATGGTATTGGTTATGATAACTATTTGCTAACCAACCCGTCA
CACTCCCTATCACCAATATTGATGAAGAATTTAGGTCAAATATTAGCTTC
TGGTTATATGATTGCTAATTACATACCACCATTTATCAACAACGCAGTAC
TATTTCAGATTTTAACGGGTAACGAGCCATCTAACGATCTCACAAAGAGA
GAATTCTTGAAGTGTTTAAACAGAGAAGATTGCAAAGTCTTGCAGAGAGC
ATCTGAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037949	XLOC_037949	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060319-protein	TCONS_00060319-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_340	supercontig	scaffold_340:329116..338467 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.309174	0.397652	0	0	5.27818	3.80628	1.81409	2.45445	0.674057	1.48697	0.766306	1.64029	0.771131	0.640622	0.730237	0.869642	1.02623	0.574148	0.877162	1.65204	0.725072	1.1196	0.148049	0.329857	1.63583	1.30328	0.220338	0.821062	11.9662	9.92105

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000569	HECT_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004842	ubiquitin-protein transferase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00060319 vs. Swiss-Prot (Human)

BLAST of TCONS_00060319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00060319 (transcript) - C. hemisphaerica