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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060311 ID=TCONS_00060311|Name=TCONS_00060311|organism=Clytia hemisphaerica|type=transcript|length=1005bp
aaaagatttactTCCCTTTCTAAAATCTTTTACTTTCCAAGAAGTAGAGA
AACCTCGGGGTCATGCGACCCCCTCAAAGTTTATATAACTTTATAAATTA
TTTACTTTAGAGCAGGAAGCTCCTTGCGAAAATACAGGCGACACAATTTG
GccaaaaatgttaaattgacgttttgatgttatatAAAGGAAAGTAATGG
CAGTCAATTTACAATTCACTCATTACGATCTAAAGTCATGGCCAAACGAA
GATCTGAAGAAGCAGGACCTAGCACaccgaaaaaaaacaatttgaatgaC
GGTAAGAAAGGAACTTcatatctcaatttttttataattttgggTAATTA
TTGAAGGTCTTAATTATTGGATCCTCATGATAGAATTCCCtgcttatatt
tttttatgtagTACGACTTGAAATCAAGTTTTTAattggttttctttttc
tttgtaggTAGCATGTTGTGTTACGTTCATTCAGTATCACCATTGTCCAA
AAAAAATGATACAACATGGTTCAACATGACATTGCAAACCCCGTCTGAAG
TTCGAAGGGCAGTGTCTTTTACACCCGAAAAGCAGAAATCGTTCAAAGAT
ATGGAGGTGGCCAAGTGCGGTGTTGAGATAACAAACTACGACAGCAAAAA
TGAAGATATCGTCATTAAGAAGGGAACAAGAATGAAAGTAGTCGGCGATA
TGCCATTCGAACACAACGCCAAAAACGGCAGTGGACAAATCAATCTGTGC
CTTACCGACTTGTACAGCTTGGCCCCAGAACAGATCATTTCCAAAATTAC
ATTAAAAGTTGTCAAGGTTGAAGACGCAATGAACACCGATTCAGCAGATA
AGTTATCTATTCAGTACGTTTATGTCGCAGATAATACATCCGTTATGAAA
GTTGTCTTGTTCGGAGAACATGTCGATACATTGAATGAAGGCAAGACATA
TCATCTTAACAATTTGAGGTTGAAATCATACAACCATGAACGGTGAGTAC
AGTCA Run BLAST on NCBI transcript from alignment at scaffold_340:14150..15423+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060311 ID=TCONS_00060311|Name=TCONS_00060311|organism=Clytia hemisphaerica|type=transcript|length=1274bp|location=Sequence derived from alignment at scaffold_340:14150..15423+ (Clytia hemisphaerica)
aaaagatttactTCCCTTTCTAAAATCTTTTACTTTCCAAGAAGTAGAGA
AACCTCGGGGTCATGCGACCCCCTCAAAGTTTATATAACTTTATAAATTA
TTTACTTTAGAGCAGGAAGCTCCTTGCGAAAATACAGGCGACACAATTTG
GccaaaaatgttaaattgacgtaaattttttctctttcgGAACCTGTTTT
ACAAATATTCTCACAATGAGGATCAAATTACAATAGTGTTGAAAAATATG
CTTGAAAATTCAAACAATAAATAGAATGCTTTCCTCTGTGATGATTGGTC
CTTTACACAAAAAAATATACCCCTTTTAAttgtttgaattgaaaatttaa
acaatAGTTATGTGCTTTCTAGGCTGTGATTGGCTGACTTTGAATTTTTA
GAACAATAGTTATTCTGTTCTGATTATTTTGCGATTcaggttttgatgtt
atatAAAGGAAAGTAATGGCAGTCAATTTACAATTCACTCATTACGATCT
AAAGTCATGGCCAAACGAAGATCTGAAGAAGCAGGACCTAGCACaccgaa
aaaaaacaatttgaatgaCGGTAAGAAAGGAACTTcatatctcaattttt
ttataattttgggTAATTATTGAAGGTCTTAATTATTGGATCCTCATGAT
AGAATTCCCtgcttatatttttttatgtagTACGACTTGAAATCAAGTTT
TTAattggttttctttttctttgtaggTAGCATGTTGTGTTACGTTCATT
CAGTATCACCATTGTCCAAAAAAAATGATACAACATGGTTCAACATGACA
TTGCAAACCCCGTCTGAAGTTCGAAGGGCAGTGTCTTTTACACCCGAAAA
GCAGAAATCGTTCAAAGATATGGAGGTGGCCAAGTGCGGTGTTGAGATAA
CAAACTACGACAGCAAAAATGAAGATATCGTCATTAAGAAGGGAACAAGA
ATGAAAGTAGTCGGCGATATGCCATTCGAACACAACGCCAAAAACGGCAG
TGGACAAATCAATCTGTGCCTTACCGACTTGTACAGCTTGGCCCCAGAAC
AGATCATTTCCAAAATTACATTAAAAGTTGTCAAGGTTGAAGACGCAATG
AACACCGATTCAGCAGATAAGTTATCTATTCAGTACGTTTATGTCGCAGA
TAATACATCCGTTATGAAAGTTGTCTTGTTCGGAGAACATGTCGATACAT
TGAATGAAGGCAAGACATATCATCTTAACAATTTGAGGTTGAAATCATAC
AACCATGAACGGTGAGTACAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060311-exon-scaffold_340-1491911889:14150..14319 | TCONS_00060311-exon-scaffold_340-1491911889:14150..14319 | Clytia hemisphaerica | exon |
| TCONS_00060311-exon-scaffold_340-1510915933:14150..14319 | TCONS_00060311-exon-scaffold_340-1510915933:14150..14319 | Clytia hemisphaerica | exon |
| TCONS_00060311-exon-scaffold_340-1575043694:14150..14319 | TCONS_00060311-exon-scaffold_340-1575043694:14150..14319 | Clytia hemisphaerica | exon |
| TCONS_00060311-exon-scaffold_340-1491911889:14589..15423 | TCONS_00060311-exon-scaffold_340-1491911889:14589..15423 | Clytia hemisphaerica | exon |
| TCONS_00060311-exon-scaffold_340-1510915933:14589..15423 | TCONS_00060311-exon-scaffold_340-1510915933:14589..15423 | Clytia hemisphaerica | exon |
| TCONS_00060311-exon-scaffold_340-1575043694:14589..15423 | TCONS_00060311-exon-scaffold_340-1575043694:14589..15423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:14150..15423 + |
Blast
The following BLAST results are available for this feature:
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