TCONS_00060310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060310
Unique NameTCONS_00060310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060310 ID=TCONS_00060310|Name=TCONS_00060310|organism=Clytia hemisphaerica|type=transcript|length=245bp
CGTCAAACCGGATTTACTTATCGgtacttatctggcacccgatgtagaaa
ttttctttcgacaCGCTAAGCAAGCTCTGGGAAAAGGTCGGGGAGACTTT
CAACATctgctggaaggtttagattacggaatttcgcctaaGCCCTAGCT
CCGAACTTAAAAAAGCNGCTAAGCAAGCTCTGGGAAAAGGTCGGGGAAAC
TTTCAACATctgctggaaggtttagattacggaatttcgcctaaG
Run BLAST on NCBI

transcript from alignment at scaffold_34:25247..25491

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060310 ID=TCONS_00060310|Name=TCONS_00060310|organism=Clytia hemisphaerica|type=transcript|length=245bp|location=Sequence derived from alignment at scaffold_34:25247..25491 (Clytia hemisphaerica)
CttaggcgaaattccgtaatctaaaccttccagcagATGTTGAAAGTTTC
CCCGACCTTTTCCCAGAGCTTGCTTAGCNGCTTTTTTAAGTTCGGAGCTA
GGGCttaggcgaaattccgtaatctaaaccttccagcagATGTTGAAAGT
CTCCCCGACCTTTTCCCAGAGCTTGCTTAGCGtgtcgaaagaaaatttct
acatcgggtgccagataagtacCGATAAGTAAATCCGGTTTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037943XLOC_037943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060310-exon-scaffold_34-1491911889:25247..25491TCONS_00060310-exon-scaffold_34-1491911889:25247..25491Clytia hemisphaericaexon
TCONS_00060310-exon-scaffold_34-1510915933:25247..25491TCONS_00060310-exon-scaffold_34-1510915933:25247..25491Clytia hemisphaericaexon
TCONS_00060310-exon-scaffold_34-1575043694:25247..25491TCONS_00060310-exon-scaffold_34-1575043694:25247..25491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:25247..25491 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.8106	5.66625	18.7973	23.9073	16.7913	14.1533	8.53765	6.99374	9.09347	12.1302	20.1837	62.4701	16.0099	17.773	10.3697	12.1399	6.85457	15.9675	30.0016	13.8505	15.2489	34.0577	2.85528	5.19173	17.8245	15.908	21.626	13.362	10.1346	11.2643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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