TCONS_00060305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060305
Unique NameTCONS_00060305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060305 ID=TCONS_00060305|Name=TCONS_00060305|organism=Clytia hemisphaerica|type=transcript|length=299bp
ACCCTTCAAACAGTCGAAAATGGCTTTACAGACTTCAGAAAGGATGTTGG
ATACGGTTGTACGTCCGATTCTGTATGAAAAGGATAGGGATTGTTGACTC
TCTCCAGTTGCCAGGTATCTAAGTGTAATTGAGAGCCGTTCTCTTGCTGA
AATTGGTCTCCGCATAGAAGTGGTTCGTTTTGTAATACGATGCTGGATGA
GTGAGAGAAGGTGCTCAAAACGAGAAGGAGTCATTCTATGATACCTGAAA
AACATTTCGTTGTCCTTCAACAAAGCTTGAAACAGTGTATAAAACGTTC
Run BLAST on NCBI

protein sequence of TCONS_00060305-protein

>TCONS_00060305-protein ID=TCONS_00060305-protein|Name=TCONS_00060305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
TFYTLFQALLKDNEMFFRYHRMTPSRFEHLLSLIQHRITKRTTSMRRPIS
ARERLSITLRYLATGESQQSLSFSYRIGRTTVSNILSEVCKAIFDCLKG
Run BLAST on NCBI

transcript from alignment at scaffold_339:431580..431878

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060305 ID=TCONS_00060305|Name=TCONS_00060305|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at scaffold_339:431580..431878 (Clytia hemisphaerica)
GAACGTTTTATACACTGTTTCAAGCTTTGTTGAAGGACAACGAAATGTTT
TTCAGGTATCATAGAATGACTCCTTCTCGTTTTGAGCACCTTCTCTCACT
CATCCAGCATCGTATTACAAAACGAACCACTTCTATGCGGAGACCAATTT
CAGCAAGAGAACGGCTCTCAATTACACTTAGATACCTGGCAACTGGAGAG
AGTCAACAATCCCTATCCTTTTCATACAGAATCGGACGTACAACCGTATC
CAACATCCTTTCTGAAGTCTGTAAAGCCATTTTCGACTGTTTGAAGGGT

Coding sequence (CDS) from alignment at scaffold_339:431580..431878

>TCONS_00060305 ID=TCONS_00060305|Name=TCONS_00060305|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_339:431580..431878 (Clytia hemisphaerica)
ACGTTTTATACACTGTTTCAAGCTTTGTTGAAGGACAACGAAATGTTTTT
CAGGTATCATAGAATGACTCCTTCTCGTTTTGAGCACCTTCTCTCACTCA
TCCAGCATCGTATTACAAAACGAACCACTTCTATGCGGAGACCAATTTCA
GCAAGAGAACGGCTCTCAATTACACTTAGATACCTGGCAACTGGAGAGAG
TCAACAATCCCTATCCTTTTCATACAGAATCGGACGTACAACCGTATCCA
ACATCCTTTCTGAAGTCTGTAAAGCCATTTTCGACTGTTTGAAGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037938XLOC_037938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060305-exon-scaffold_339-1491911889:431580..431878TCONS_00060305-exon-scaffold_339-1491911889:431580..431878Clytia hemisphaericaexon
TCONS_00060305-exon-scaffold_339-1510915933:431580..431878TCONS_00060305-exon-scaffold_339-1510915933:431580..431878Clytia hemisphaericaexon
TCONS_00060305-exon-scaffold_339-1575043694:431580..431878TCONS_00060305-exon-scaffold_339-1575043694:431580..431878Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060305-proteinTCONS_00060305-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:431580..431878 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.530772	0	0	0	0	1.23247	1.19626	0.786377	0.523522	0.543683	0.223491	0.23984	0.295463	3.0284	0	0.87563	0.761081	1.11369	0.902554	0.410276	0.84515	0.377138	0.539684	0	1.7474	0.44508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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