TCONS_00060303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060303
Unique NameTCONS_00060303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060303 ID=TCONS_00060303|Name=TCONS_00060303|organism=Clytia hemisphaerica|type=transcript|length=664bp
CTTGCATTGTCAGTGATTACAATACCAAGCTGCATTGTCAGCTTTTACAA
ATATCTTATTTAGATACATTAGAAAATATTTGAGTCTCAGAGATTTACat
atagttttttatttttgaaatgataTCCATTGAATCATACCGTGCGTTGA
TAGGAGGCTTTGCCTACACAGCTCAGAGAAATGTAAAGTCAATTTCTAAG
TCCATTTTTATCGGctccaaattttctaaaaatgcttTTTCTAGATTATT
GAAACCCGTTAGATTCATAGCACTTTTTacacttttattttttgcaatCC
CTAAGTCTTACGAAACAGTTGAAATTCAAACACCTCTTGACCTTATGCAT
TTTTCAAGGAATGGAACGTTTGTTCAGTATCCAAATAGTGCAGGGTATAA
TTTACCAGAGCCAGTTCTTATTACTTTTAAAGTCAACTATACATTACTAT
TGTCAGGTGATATAGAACTTAATCCAGGTCCACCACAGGAAGAGATAAAA
AGTATTCAAGGTTCATTTCATCAAGGAAATTCAAAGTTTGGCGAGACTGC
TGGTATACAGTGTTCATCCAATTGTTTTTTTGCCATTTGCTATGCACAGC
TCAGAAAATTATCACTTTGGAAGACTCATGATTTAGATTATGTTTTGAAT
CAAGGGGATCTAAA
Run BLAST on NCBI

protein sequence of TCONS_00060303-protein

>TCONS_00060303-protein ID=TCONS_00060303-protein|Name=TCONS_00060303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MISIESYRALIGGFAYTAQRNVKSISKSIFIGSKFSKNAFSRLLKPVRFI
ALFTLLFFAIPKSYETVEIQTPLDLMHFSRNGTFVQYPNSAGYNLPEPVL
ITFKVNYTLLLSGDIELNPGPPQEEIKSIQGSFHQGNSKFGETAGIQCSS
NCFFAICYAQLRKLSLWKTHDLDYVLNQGDL
Run BLAST on NCBI

transcript from alignment at scaffold_339:337451..338114

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060303 ID=TCONS_00060303|Name=TCONS_00060303|organism=Clytia hemisphaerica|type=transcript|length=664bp|location=Sequence derived from alignment at scaffold_339:337451..338114 (Clytia hemisphaerica)
TTTAGATCCCCTTGATTCAAAACATAATCTAAATCATGAGTCTTCCAAAG
TGATAATTTTCTGAGCTGTGCATAGCAAATGGCAAAAAAACAATTGGATG
AACACTGTATACCAGCAGTCTCGCCAAACTTTGAATTTCCTTGATGAAAT
GAACCTTGAATACTTTTTATCTCTTCCTGTGGTGGACCTGGATTAAGTTC
TATATCACCTGACAATAGTAATGTATAGTTGACTTTAAAAGTAATAAGAA
CTGGCTCTGGTAAATTATACCCTGCACTATTTGGATACTGAACAAACGTT
CCATTCCTTGAAAAATGCATAAGGTCAAGAGGTGTTTGAATTTCAACTGT
TTCGTAAGACTTAGGGattgcaaaaaataaaagtgtAAAAAGTGCTATGA
ATCTAACGGGTTTCAATAATCTAGAAAaagcatttttagaaaatttggag
CCGATAAAAATGGACTTAGAAATTGACTTTACATTTCTCTGAGCTGTGTA
GGCAAAGCCTCCTATCAACGCACGGTATGATTCAATGGAtatcatttcaa
aaataaaaaactatatGTAAATCTCTGAGACTCAAATATTTTCTAATGTA
TCTAAATAAGATATTTGTAAAAGCTGACAATGCAGCTTGGTATTGTAATC
ACTGACAATGCAAG

Coding sequence (CDS) from alignment at scaffold_339:337451..338114

>TCONS_00060303 ID=TCONS_00060303|Name=TCONS_00060303|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_339:337451..338114 (Clytia hemisphaerica)
TAGATCCCCTTGATTCAAAACATAATCTAAATCATGAGTCTTCCAAAGTG
ATAATTTTCTGAGCTGTGCATAGCAAATGGCAAAAAAACAATTGGATGAA
CACTGTATACCAGCAGTCTCGCCAAACTTTGAATTTCCTTGATGAAATGA
ACCTTGAATACTTTTTATCTCTTCCTGTGGTGGACCTGGATTAAGTTCTA
TATCACCTGACAATAGTAATGTATAGTTGACTTTAAAAGTAATAAGAACT
GGCTCTGGTAAATTATACCCTGCACTATTTGGATACTGAACAAACGTTCC
ATTCCTTGAAAAATGCATAAGGTCAAGAGGTGTTTGAATTTCAACTGTTT
CGTAAGACTTAGGGattgcaaaaaataaaagtgtAAAAAGTGCTATGAAT
CTAACGGGTTTCAATAATCTAGAAAaagcatttttagaaaatttggagCC
GATAAAAATGGACTTAGAAATTGACTTTACATTTCTCTGAGCTGTGTAGG
CAAAGCCTCCTATCAACGCACGGTATGATTCAATGGAtatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037936XLOC_037936Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060303-proteinTCONS_00060303-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060303-exon-scaffold_339-1491911889:337451..338114TCONS_00060303-exon-scaffold_339-1491911889:337451..338114Clytia hemisphaericaexon
TCONS_00060303-exon-scaffold_339-1510915933:337451..338114TCONS_00060303-exon-scaffold_339-1510915933:337451..338114Clytia hemisphaericaexon
TCONS_00060303-exon-scaffold_339-1575043694:337451..338114TCONS_00060303-exon-scaffold_339-1575043694:337451..338114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:337451..338114 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58906	1.83457	3.12547	2.73542	0.780099	0.442209	0.703105	0.143102	0.332094	0.782729	0.0789972	0.365581	0.194328	0.0583174	0.189318	0.532205	0.616365	0.0944475	0.496339	0.471471	0.496175	0.716481	0.290765	0.109703	0.532424	0.743998	0.795888	1.38678	0.295521	0.91093
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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