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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060302 ID=TCONS_00060302|Name=TCONS_00060302|organism=Clytia hemisphaerica|type=transcript|length=1680bp
GTCGTATAATTACAGTGTGCTAAATAAACACAAAAGTtcattttccgaaa
aaaacgatTTTGGGGCCCAAAAATGACccaaaatagggtttttttgattt
tttttgggaaaatcttttaattagtttttcctaattttttgaacaaagac
gTAGAATTACAGTATGTgctaaatatgaaaaagtttttttcgaaaagaaa
tttttggcaccgacttattattcaaattattcagTTTTTGTATATGCATT
GCCTTcattaaacttttattattcgttttataaacaggtaggtccttaaa
agtatcgcttgttgcTTAAAAATGCAACTTGTGTCTTTTGCAAtcatgtt
tttatcaaaatttgataGGTGGTTTTATGATGTTCTTGAGCAATCtcgaa
aatcattttttttcaatttagcaTAACCTTTGATCAGGTAAACCAAATTT
GATGAATGactaataaaaatttaaatccatCTTTCCTTTCTCTTATAGAA
TATATTtgattctttgaaaattaaaaatgaatcaaaataagaccaatttc
actaaattagctATTTGCAAGATTCGTTTATATTGTTGTAAAAAGAGAAC
CCATTGTCAAGGAAATACAAGACCAACATTcagtagaaaaaaataatcag
aaaTTCAATCTTTCATGAATTAGAAATATGTTTGGGTCAGGTTAGGGCAA
CCGATTTAACGAGGAACGAAATGCAAGCAATTTCAACTTGATCACTAgtc
tgatttaaaaaattatatatttgaCCATTGATGTAATATCTTTTTTATTA
GATGTCAATTTTCTGGTAATGGTATTGGATGGATTCGAATAGCTTTGGCA
TCGGAAGTGGTTGTCATGACTTTACCTGGCCTATCATTGTACACTCTGTT
GAACTTGGAATGGTTATGACCAGTACAAATGGGTAGAATGTACCAAAAGT
TGTCACGTATTTTATACTCCATGTGTCCGCCTGAAATCTTGCCGCCATGT
TGGTTACCTTTCTCCTCGTTAGAAAAGGGTTTTTCTATTTTGCAACTTAT
TGTGTTTTGTCTTTCGTAAATTTGTTTCCAAAATTTGATCCAAGATTTGT
AATTTGTCTCCTTGGCTTTGACTCTAACATCAGCTGTGGTGCCCTTCACA
TTATGAACTTCTTTATTTCCGAAGTCCACCTTTTCAATATCCTCTTGGTG
CAATGAGGTTCCTCTTTGTTGTCCACCACCTCCTCCTGGACCGCCACTCC
ACCGCCCATCCACCCCTTCACCATAACCCATATCTTGAATTGATGTGAAT
CGCCTAGTGATACTTTGCGTTTCTCGAGCGACATCAGAAGGTAGGATGGT
GGCATCGACCACTTCACCATTGTGCTCCTTGTACAAGATTTTGTATGGAA
CATACATATCCATGGATTCTAATTCTCGTTgtaacctttgatacaaatCT
GGTGCAACATAATCCGCCTCTAAGATCCTTTGAAGTCGCCCTCGTATCTC
CTCTTCATAAGCTTGTTGTCGAAACCCAGAACTTCGCCCAAACCGTGATT
GGGCCATACTGACGACTAGTTTTCAACTGACTATTCGAGGGTACAATTAT
TGAATGTTATGCAAACTCAAATCTTGTTCAAACATATCTCAACAACGAAT
TGTTATCTTCCAACAGTAATTTGATACCAT Run BLAST on NCBI protein sequence of TCONS_00060302-protein >TCONS_00060302-protein ID=TCONS_00060302-protein|Name=TCONS_00060302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MAQSRFGRSSGFRQQAYEEEIRGRLQRILEADYVAPDLYQRLQRELESMD
MYVPYKILYKEHNGEVVDATILPSDVARETQSITRRFTSIQDMGYGEGVD
GRWSGGPGGGGGQQRGTSLHQEDIEKVDFGNKEVHNVKGTTADVRVKAKE
TNYKSWIKFWKQIYERQNTISCKIEKPFSNEEKGNQHGGKISGGHMEYKI
RDNFWYILPICTGHNHSKFNRVYNDRPGKVMTTTSDAKAIRIHPIPLPEN Run BLAST on NCBI transcript from alignment at scaffold_339:309038..310717 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060302 ID=TCONS_00060302|Name=TCONS_00060302|organism=Clytia hemisphaerica|type=transcript|length=1680bp|location=Sequence derived from alignment at scaffold_339:309038..310717 (Clytia hemisphaerica)
ATGGTATCAAATTACTGTTGGAAGATAACAATTCGTTGTTGAGATATGTT
TGAACAAGATTTGAGTTTGCATAACATTCAATAATTGTACCCTCGAATAG
TCAGTTGAAAACTAGTCGTCAGTATGGCCCAATCACGGTTTGGGCGAAGT
TCTGGGTTTCGACAACAAGCTTATGAAGAGGAGATACGAGGGCGACTTCA
AAGGATCTTAGAGGCGGATTATGTTGCACCAGatttgtatcaaaggttac
AACGAGAATTAGAATCCATGGATATGTATGTTCCATACAAAATCTTGTAC
AAGGAGCACAATGGTGAAGTGGTCGATGCCACCATCCTACCTTCTGATGT
CGCTCGAGAAACGCAAAGTATCACTAGGCGATTCACATCAATTCAAGATA
TGGGTTATGGTGAAGGGGTGGATGGGCGGTGGAGTGGCGGTCCAGGAGGA
GGTGGTGGACAACAAAGAGGAACCTCATTGCACCAAGAGGATATTGAAAA
GGTGGACTTCGGAAATAAAGAAGTTCATAATGTGAAGGGCACCACAGCTG
ATGTTAGAGTCAAAGCCAAGGAGACAAATTACAAATCTTGGATCAAATTT
TGGAAACAAATTTACGAAAGACAAAACACAATAAGTTGCAAAATAGAAAA
ACCCTTTTCTAACGAGGAGAAAGGTAACCAACATGGCGGCAAGATTTCAG
GCGGACACATGGAGTATAAAATACGTGACAACTTTTGGTACATTCTACCC
ATTTGTACTGGTCATAACCATTCCAAGTTCAACAGAGTGTACAATGATAG
GCCAGGTAAAGTCATGACAACCACTTCCGATGCCAAAGCTATTCGAATCC
ATCCAATACCATTACCAGAAAATTGACATCTAATAAAAAAGATATTACAT
CAATGGtcaaatatataattttttaaatcagacTAGTGATCAAGTTGAAA
TTGCTTGCATTTCGTTCCTCGTTAAATCGGTTGCCCTAACCTGACCCAAA
CATATTTCTAATTCATGAAAGATTGAAtttctgattatttttttctactg
AATGTTGGTCTTGTATTTCCTTGACAATGGGTTCTCTTTTTACAACAATA
TAAACGAATCTTGCAAATagctaatttagtgaaattggtcttattttgat
tcatttttaattttcaaagaatcaAATATATTCTATAAGAGAAAGGAAAG
atggatttaaatttttattagtCATTCATCAAATTTGGTTTACCTGATCA
AAGGTTAtgctaaattgaaaaaaaatgattttcgaGATTGCTCAAGAACA
TCATAAAACCACCtatcaaattttgataaaaacatgaTTGCAAAAGACAC
AAGTTGCATTTTTAAgcaacaagcgatacttttaaggacctacctgttta
taaaacgaataataaaagtttaatgAAGGCAATGCATATACAAAAActga
ataatttgaataataagtcggtgccaaaaatttcttttcgaaaaaaactt
tttcatatttagcACATACTGTAATTCTAcgtctttgttcaaaaaattag
gaaaaactaattaaaagattttcccaaaaaaaatcaaaaaaaccctattt
tggGTCATTTTTGGGCCCCAAAatcgtttttttcggaaaatgaACTTTTG
TGTTTATTTAGCACACTGTAATTATACGAC Coding sequence (CDS) from alignment at scaffold_339:309038..310717 >TCONS_00060302 ID=TCONS_00060302|Name=TCONS_00060302|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_339:309038..310717 (Clytia hemisphaerica)
ATGGCCCAATCACGGTTTGGGCGAAGTTCTGGGTTTCGACAACAAGCTTA
TGAAGAGGAGATACGAGGGCGACTTCAAAGGATCTTAGAGGCGGATTATG
TTGCACCAGatttgtatcaaaggttacAACGAGAATTAGAATCCATGGAT
ATGTATGTTCCATACAAAATCTTGTACAAGGAGCACAATGGTGAAGTGGT
CGATGCCACCATCCTACCTTCTGATGTCGCTCGAGAAACGCAAAGTATCA
CTAGGCGATTCACATCAATTCAAGATATGGGTTATGGTGAAGGGGTGGAT
GGGCGGTGGAGTGGCGGTCCAGGAGGAGGTGGTGGACAACAAAGAGGAAC
CTCATTGCACCAAGAGGATATTGAAAAGGTGGACTTCGGAAATAAAGAAG
TTCATAATGTGAAGGGCACCACAGCTGATGTTAGAGTCAAAGCCAAGGAG
ACAAATTACAAATCTTGGATCAAATTTTGGAAACAAATTTACGAAAGACA
AAACACAATAAGTTGCAAAATAGAAAAACCCTTTTCTAACGAGGAGAAAG
GTAACCAACATGGCGGCAAGATTTCAGGCGGACACATGGAGTATAAAATA
CGTGACAACTTTTGGTACATTCTACCCATTTGTACTGGTCATAACCATTC
CAAGTTCAACAGAGTGTACAATGATAGGCCAGGTAAAGTCATGACAACCA
CTTCCGATGCCAAAGCTATTCGAATCCATCCAATACCATTACCAGAAAAT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060302-exon-scaffold_339-1491911889:309038..310717 | TCONS_00060302-exon-scaffold_339-1491911889:309038..310717 | Clytia hemisphaerica | exon |
| TCONS_00060302-exon-scaffold_339-1510915933:309038..310717 | TCONS_00060302-exon-scaffold_339-1510915933:309038..310717 | Clytia hemisphaerica | exon |
| TCONS_00060302-exon-scaffold_339-1575043694:309038..310717 | TCONS_00060302-exon-scaffold_339-1575043694:309038..310717 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:309038..310717 . |
Blast
The following BLAST results are available for this feature:
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