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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060301 ID=TCONS_00060301|Name=TCONS_00060301|organism=Clytia hemisphaerica|type=transcript|length=1899bp
TATAAAGTAAGCAAACATTAACGTGTAttttattttactgaaaatacaaa
caccaaaatattttttacaatatacCAAAATTATTTATCGTTACTTGTCA
TTGCTATGAATAGcatcaaaaatcataaaattcctGCTACAAATAAAGCC
TGCAAATTGACGTAAAATACGTGTAttttattttactgaaaatacaaaca
ccaaaatattttttacaatatacCAAAATTATTTATCGTTACTTGTCATT
GCTATGAATAGcatcaaaaatcataaaattcctGCTACAAATAAAGCCTG
CAAATTGACGTAAAATACGTGTAttttattttactgaaaatacaaacacc
aaaatattttttacaatatacCAAAATTATTTATCGTTACTTGTCATTGC
TATGAATAGcatcaaaaatcataaaattcctGCTACAAATAAAGCCTGCA
AATTGACGTAAAATACGTGTAttttattttactgaaaatacaaacaccaa
aatattttttacaatatacCAAAATTATTTATCGTTACTTGTCATTGCTA
TGAATAGcatcaaaaatcataaaattcctGCTACAAATAAAGCCTGCAAA
TTGACGTAAAATACGTGTattttttttactgaaaatacaaacaccaaaat
attttttacaatatacCAAAATTATTTATCGTTACTTGTCATTGCTATGA
ATAGcatcaaaaatcataaaattccGGCTACAAATAAAGCCTGCAAATTG
ACGTAAAATacgtgtattttgttttttctgaaaatacaaacaccaaaata
tttttttacaatataCCAAAATTATTTATCGTTACTTGTCATTGCTATGA
ACCCCTTATCGGTATTCGAACAGCCTTACCATCTGAGGTAGTGATCATGA
CACCACCTTTCCCACCTCTGTCAAATTTTTTACTGTTATGTCCCGCACAA
ATTGGTAGAATATACCAAAATTTGTCCTCAACCTCCTTCTCCATGTGGCC
TCCTACGATTCTGCTTGAATGAAGGACATCTTTATCATCTTTATCATCTT
TATCATCTTTATCATCTTTATCATCTTTATTCTCTATTCTCGCTATTCTG
CAATGTCGAGTAGAGTCTTTTCCACAGACCTCTTCCCAGAAAGCAATCCA
ATTTTTTTCCCTCCTGGTGTCAATGGTGGTCCCTTTGACGTTGAAACATC
TCTCATTTTCGAAATCGACTTTTTCTATATCTTCTTTTCTCAGGGGTTCG
TCCTTTAATATTATTATACCACCATATTTTCTGTTAAGTGTAAGCCGGTC
TTTAAATGAGGTAGTAAAGTTAATCATTTCTGTATCAAGACTATGAAATA
TTGGTAAATCATCGGCCCTCATAATTGTAGCATCAATGATTTCTCCCTGG
TGGATTTTGTAGAACATTTTATATGGAACATCTGTCTCCATTGAATCAAC
TTCCGATAGAAATGACTGGTGAAAGTATGGCTTAGCTTCCACGGCAACTG
ATATTCTGTGTAATGTGCTTTTTGCAGCCACATATTTTTCGATGTTTGAA
TCAAACTCATCAAATACTCGAGATTGTTCAGCAGATATCACACTCGCCTC
TTGACCCATGATTGATCAGTAAACTGCTTTCCAAATTTCCACTATTCttt
caaaaagtaaattttcaaaaatcttgccCGAACACAACTCGGCAAGCCGT
CATACTGTATTCGTACTGTGTTCAAGTAGAAGTTTGTGAGGGAGAAAAGC
TCCATTCTCAGAAAGAggagaaagatgaaaaatgattataagCAGAGTTA
TAAGTTTCGTGTTGTGTTTCTTACTAAGGATATCATACAGAAAAAAAGTG
TTTCCATTGCCGTTTTCTCCAATacagttgtatacttttttaatctttt Run BLAST on NCBI protein sequence of TCONS_00060301-protein >TCONS_00060301-protein ID=TCONS_00060301-protein|Name=TCONS_00060301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MGQEASVISAEQSRVFDEFDSNIEKYVAAKSTLHRISVAVEAKPYFHQSF
LSEVDSMETDVPYKMFYKIHQGEIIDATIMRADDLPIFHSLDTEMINFTT
SFKDRLTLNRKYGGIIILKDEPLRKEDIEKVDFENERCFNVKGTTIDTRR
EKNWIAFWEEVCGKDSTRHCRIARIENKDDKDDKDDKDDKDDKDVLHSSR
IVGGHMEKEVEDKFWYILPICAGHNSKKFDRGGKGGVMITTSDGKAVRIP
IRGS Run BLAST on NCBI transcript from alignment at scaffold_339:304738..306636 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060301 ID=TCONS_00060301|Name=TCONS_00060301|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at scaffold_339:304738..306636 (Clytia hemisphaerica)
aaaagattaaaaaagtatacaactgtATTGGAGAAAACGGCAATGGAAAC
ACTTTTTTTCTGTATGATATCCTTAGTAAGAAACACAACACGAAACTTAT
AACTCTGcttataatcatttttcatctttctccTCTTTCTGAGAATGGAG
CTTTTCTCCCTCACAAACTTCTACTTGAACACAGTACGAATACAGTATGA
CGGCTTGCCGAGTTGTGTTCGggcaagatttttgaaaatttactttttga
aaGAATAGTGGAAATTTGGAAAGCAGTTTACTGATCAATCATGGGTCAAG
AGGCGAGTGTGATATCTGCTGAACAATCTCGAGTATTTGATGAGTTTGAT
TCAAACATCGAAAAATATGTGGCTGCAAAAAGCACATTACACAGAATATC
AGTTGCCGTGGAAGCTAAGCCATACTTTCACCAGTCATTTCTATCGGAAG
TTGATTCAATGGAGACAGATGTTCCATATAAAATGTTCTACAAAATCCAC
CAGGGAGAAATCATTGATGCTACAATTATGAGGGCCGATGATTTACCAAT
ATTTCATAGTCTTGATACAGAAATGATTAACTTTACTACCTCATTTAAAG
ACCGGCTTACACTTAACAGAAAATATGGTGGTATAATAATATTAAAGGAC
GAACCCCTGAGAAAAGAAGATATAGAAAAAGTCGATTTCGAAAATGAGAG
ATGTTTCAACGTCAAAGGGACCACCATTGACACCAGGAGGGAAAAAAATT
GGATTGCTTTCTGGGAAGAGGTCTGTGGAAAAGACTCTACTCGACATTGC
AGAATAGCGAGAATAGAGAATAAAGATGATAAAGATGATAAAGATGATAA
AGATGATAAAGATGATAAAGATGTCCTTCATTCAAGCAGAATCGTAGGAG
GCCACATGGAGAAGGAGGTTGAGGACAAATTTTGGTATATTCTACCAATT
TGTGCGGGACATAACAGTAAAAAATTTGACAGAGGTGGGAAAGGTGGTGT
CATGATCACTACCTCAGATGGTAAGGCTGTTCGAATACCGATAAGGGGTT
CATAGCAATGACAAGTAACGATAAATAATTTTGGtatattgtaaaaaaat
attttggtgtttgtattttcagaaaaaacaaaatacacgtATTTTACGTC
AATTTGCAGGCTTTATTTGTAGCCggaattttatgatttttgatgCTATT
CATAGCAATGACAAGTAACGATAAATAATTTTGgtatattgtaaaaaata
ttttggtgtttgtattttcagtaaaaaaaatACACGTATTTTACGTCAAT
TTGCAGGCTTTATTTGTAGCaggaattttatgatttttgatgCTATTCAT
AGCAATGACAAGTAACGATAAATAATTTTGgtatattgtaaaaaatattt
tggtgtttgtattttcagtaaaataaaaTACACGTATTTTACGTCAATTT
GCAGGCTTTATTTGTAGCaggaattttatgatttttgatgCTATTCATAG
CAATGACAAGTAACGATAAATAATTTTGgtatattgtaaaaaatattttg
gtgtttgtattttcagtaaaataaaaTACACGTATTTTACGTCAATTTGC
AGGCTTTATTTGTAGCaggaattttatgatttttgatgCTATTCATAGCA
ATGACAAGTAACGATAAATAATTTTGgtatattgtaaaaaatattttggt
gtttgtattttcagtaaaataaaaTACACGTATTTTACGTCAATTTGCAG
GCTTTATTTGTAGCaggaattttatgatttttgatgCTATTCATAGCAAT
GACAAGTAACGATAAATAATTTTGgtatattgtaaaaaatattttggtgt
ttgtattttcagtaaaataaaaTACACGTTAATGTTTGCTTACTTTATA Coding sequence (CDS) from alignment at scaffold_339:304738..306636 >TCONS_00060301 ID=TCONS_00060301|Name=TCONS_00060301|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_339:304738..306636 (Clytia hemisphaerica)
ATGGGTCAAGAGGCGAGTGTGATATCTGCTGAACAATCTCGAGTATTTGA
TGAGTTTGATTCAAACATCGAAAAATATGTGGCTGCAAAAAGCACATTAC
ACAGAATATCAGTTGCCGTGGAAGCTAAGCCATACTTTCACCAGTCATTT
CTATCGGAAGTTGATTCAATGGAGACAGATGTTCCATATAAAATGTTCTA
CAAAATCCACCAGGGAGAAATCATTGATGCTACAATTATGAGGGCCGATG
ATTTACCAATATTTCATAGTCTTGATACAGAAATGATTAACTTTACTACC
TCATTTAAAGACCGGCTTACACTTAACAGAAAATATGGTGGTATAATAAT
ATTAAAGGACGAACCCCTGAGAAAAGAAGATATAGAAAAAGTCGATTTCG
AAAATGAGAGATGTTTCAACGTCAAAGGGACCACCATTGACACCAGGAGG
GAAAAAAATTGGATTGCTTTCTGGGAAGAGGTCTGTGGAAAAGACTCTAC
TCGACATTGCAGAATAGCGAGAATAGAGAATAAAGATGATAAAGATGATA
AAGATGATAAAGATGATAAAGATGATAAAGATGTCCTTCATTCAAGCAGA
ATCGTAGGAGGCCACATGGAGAAGGAGGTTGAGGACAAATTTTGGTATAT
TCTACCAATTTGTGCGGGACATAACAGTAAAAAATTTGACAGAGGTGGGA
AAGGTGGTGTCATGATCACTACCTCAGATGGTAAGGCTGTTCGAATACCG
ATAAGGGGTTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060301-exon-scaffold_339-1491911889:304738..306636 | TCONS_00060301-exon-scaffold_339-1491911889:304738..306636 | Clytia hemisphaerica | exon |
| TCONS_00060301-exon-scaffold_339-1510915933:304738..306636 | TCONS_00060301-exon-scaffold_339-1510915933:304738..306636 | Clytia hemisphaerica | exon |
| TCONS_00060301-exon-scaffold_339-1575043694:304738..306636 | TCONS_00060301-exon-scaffold_339-1575043694:304738..306636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:304738..306636 . |
Blast
The following BLAST results are available for this feature:
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