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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060299 ID=TCONS_00060299|Name=TCONS_00060299|organism=Clytia hemisphaerica|type=transcript|length=924bp
TAATTTTTTCAGAGTAAAAAAATACTGAACATGACGCTTGAGGCAGAAGA
GACCATCATGAAAGCTTTGGCTGGTCCCATTTCCCTTTCCACGGTCCTCG
TAACGTTTGGGCCGTACTTTTCATCGAATTATCTTGCTTACGTCATCATT
TTCTTTGTTGTCATTATTGGAATCTTTGAGAAAATGGAATGGAATCGTAA
AGAGAAAATTGcatcaaaatattcaactaTTCGATCGATTTCGagagaaa
attcgaaaaatttcaaCAATACTGAGAATCGAATTTCCCAAATAGAGACA
ATTGAAAATTCGAATGCTACACCTACAAAAGAGAGCAAATTAAAGAAGGT
AATATCGAACGTTAGTCCACGTCATAAATCCATGTCCACACCTTCTAAGA
AAGCAATTAGGCCACGATTAAAAGAACTTCGAAGTCGTTTTTCGAAATCG
TATCATTATAGTATcgaagaaaaaaagtaaattggTTCATTGGTTGAAAG
AAATTCTATGGTTTCTGGAAGGCtggaacatttttctttcttttcttctt
gcattaaataaatttttacattgaaGCATTTTTTGTAACCGTCAAATCAC
TGGTGAGTAGAATGCTTAATAGAATCGTAGAATGGTTGCTGGTTGCTGTG
AAGTTAGGTTTTTAGCTTGGAAAACCTAATATTTGCCTGAAATTTTACAT
CAAAGATGTTCCTCATAAAAATCTGTATTCAATTCGAACCAGCTCTTAAT
ATTGGAATTCAAACGCACTGATTGAAGATGATCTGGTTTATAGGGTTTCA
ATAGCATGGTTTCTTATTTTAGAGAGACATAAAATCCGAACGGAGAGCGT
GTTActggatttaaaaaaatggatatTGCGTGTATATtagtatattttca
aatcataagACTATCTTCTTACAT Run BLAST on NCBI protein sequence of TCONS_00060299-protein >TCONS_00060299-protein ID=TCONS_00060299-protein|Name=TCONS_00060299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MTLEAEETIMKALAGPISLSTVLVTFGPYFSSNYLAYVIIFFVVIIGIFE
KMEWNRKEKIASKYSTIRSISRENSKNFNNTENRISQIETIENSNATPTK
ESKLKKVISNVSPRHKSMSTPSKKAIRPRLKELRSRFSKSYHYSIEEKK Run BLAST on NCBI transcript from alignment at scaffold_339:254838..255761 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060299 ID=TCONS_00060299|Name=TCONS_00060299|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at scaffold_339:254838..255761 (Clytia hemisphaerica)
ATGTAAGAAGATAGTcttatgatttgaaaatatactaATATACACGCAat
atccatttttttaaatccagTAACACGCTCTCCGTTCGGATTTTATGTCT
CTCTAAAATAAGAAACCATGCTATTGAAACCCTATAAACCAGATCATCTT
CAATCAGTGCGTTTGAATTCCAATATTAAGAGCTGGTTCGAATTGAATAC
AGATTTTTATGAGGAACATCTTTGATGTAAAATTTCAGGCAAATATTAGG
TTTTCCAAGCTAAAAACCTAACTTCACAGCAACCAGCAACCATTCTACGA
TTCTATTAAGCATTCTACTCACCAGTGATTTGACGGTTACAAAAAATGCt
tcaatgtaaaaatttatttaatgcaagaagaaaagaaagaaaaatgttcc
aGCCTTCCAGAAACCATAGAATTTCTTTCAACCAATGAAccaatttactt
tttttcttcgATACTATAATGATACGATTTCGAAAAACGACTTCGAAGTT
CTTTTAATCGTGGCCTAATTGCTTTCTTAGAAGGTGTGGACATGGATTTA
TGACGTGGACTAACGTTCGATATTACCTTCTTTAATTTGCTCTCTTTTGT
AGGTGTAGCATTCGAATTTTCAATTGTCTCTATTTGGGAAATTCGATTCT
CAGTATTGttgaaatttttcgaattttctctCGAAATCGATCGAAtagtt
gaatattttgatgCAATTTTCTCTTTACGATTCCATTCCATTTTCTCAAA
GATTCCAATAATGACAACAAAGAAAATGATGACGTAAGCAAGATAATTCG
ATGAAAAGTACGGCCCAAACGTTACGAGGACCGTGGAAAGGGAAATGGGA
CCAGCCAAAGCTTTCATGATGGTCTCTTCTGCCTCAAGCGTCATGTTCAG
TATTTTTTTACTCTGAAAAAATTA Coding sequence (CDS) from alignment at scaffold_339:254838..255761 >TCONS_00060299 ID=TCONS_00060299|Name=TCONS_00060299|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_339:254838..255761 (Clytia hemisphaerica)
ttactttttttcttcgATACTATAATGATACGATTTCGAAAAACGACTTC
GAAGTTCTTTTAATCGTGGCCTAATTGCTTTCTTAGAAGGTGTGGACATG
GATTTATGACGTGGACTAACGTTCGATATTACCTTCTTTAATTTGCTCTC
TTTTGTAGGTGTAGCATTCGAATTTTCAATTGTCTCTATTTGGGAAATTC
GATTCTCAGTATTGttgaaatttttcgaattttctctCGAAATCGATCGA
AtagttgaatattttgatgCAATTTTCTCTTTACGATTCCATTCCATTTT
CTCAAAGATTCCAATAATGACAACAAAGAAAATGATGACGTAAGCAAGAT
AATTCGATGAAAAGTACGGCCCAAACGTTACGAGGACCGTGGAAAGGGAA
ATGGGACCAGCCAAAGCTTTCATGATGGTCTCTTCTGCCTCAAGCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060299-exon-scaffold_339-1491911889:254838..255761 | TCONS_00060299-exon-scaffold_339-1491911889:254838..255761 | Clytia hemisphaerica | exon |
| TCONS_00060299-exon-scaffold_339-1510915933:254838..255761 | TCONS_00060299-exon-scaffold_339-1510915933:254838..255761 | Clytia hemisphaerica | exon |
| TCONS_00060299-exon-scaffold_339-1575043694:254838..255761 | TCONS_00060299-exon-scaffold_339-1575043694:254838..255761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:254838..255761 . |
Blast
The following BLAST results are available for this feature:
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