TCONS_00060298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060298
Unique NameTCONS_00060298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060298 ID=TCONS_00060298|Name=TCONS_00060298|organism=Clytia hemisphaerica|type=transcript|length=553bp
AGTCCAAGCTAAGAAACCGGCAGTCGAACTATACATCCTAACCGCCCCAG
CACAGGGTAGGTGACTCAATCGACTAGGAATTAACCTAAgctaaaattta
gctccaattAATTCTTGCGTCTCTCATTTTATAAGGTGTGGTCGAAACAT
CAAAAAGCCTTAGTAGCGGAGGGGAGTGTAAGAACCAAAGGAAACAAGAA
ATTGTAGACAAATATAATATGTGCCGAGACAGAAAAGTATATTTCGAATG
AAAGTGTAAGTAAAGTGTTTGCCGAAACTATAAAATTGGATTTGGGATAA
CATTGGGGATGCATCAATATCAAGCTAAGCTAATCCTATCCCGTGTTGAC
GACGGGAGCGACCTAGCCTGTGTTGATGACGGGAGCGACCTTAGCCCGTG
TTGATGACGGGAGCGACCTTAGCCCGTGTTGATGACGGGAGCGACCTAGC
CCGTGTTGATGACGGGTACTAACAGATCTATAAGTAAACTGACTACTGAC
TTGCCAAGGTTACGCAGTAACCCGACACCCCAAAGTCACCCCAAATCCAG
CAG
Run BLAST on NCBI

transcript from alignment at scaffold_339:248090..248642

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060298 ID=TCONS_00060298|Name=TCONS_00060298|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at scaffold_339:248090..248642 (Clytia hemisphaerica)
CTGCTGGATTTGGGGTGACTTTGGGGTGTCGGGTTACTGCGTAACCTTGG
CAAGTCAGTAGTCAGTTTACTTATAGATCTGTTAGTACCCGTCATCAACA
CGGGCTAGGTCGCTCCCGTCATCAACACGGGCTAAGGTCGCTCCCGTCAT
CAACACGGGCTAAGGTCGCTCCCGTCATCAACACAGGCTAGGTCGCTCCC
GTCGTCAACACGGGATAGGATTAGCTTAGCTTGATATTGATGCATCCCCA
ATGTTATCCCAAATCCAATTTTATAGTTTCGGCAAACACTTTACTTACAC
TTTCATTCGAAATATACTTTTCTGTCTCGGCACATATTATATTTGTCTAC
AATTTCTTGTTTCCTTTGGTTCTTACACTCCCCTCCGCTACTAAGGCTTT
TTGATGTTTCGACCACACCTTATAAAATGAGAGACGCAAGAATTaattgg
agctaaattttagcTTAGGTTAATTCCTAGTCGATTGAGTCACCTACCCT
GTGCTGGGGCGGTTAGGATGTATAGTTCGACTGCCGGTTTCTTAGCTTGG
ACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037931XLOC_037931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060298-exon-scaffold_339-1491911889:248090..248642TCONS_00060298-exon-scaffold_339-1491911889:248090..248642Clytia hemisphaericaexon
TCONS_00060298-exon-scaffold_339-1510915933:248090..248642TCONS_00060298-exon-scaffold_339-1510915933:248090..248642Clytia hemisphaericaexon
TCONS_00060298-exon-scaffold_339-1575043694:248090..248642TCONS_00060298-exon-scaffold_339-1575043694:248090..248642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:248090..248642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0913704	0	0	2.75219	1.44921	0.569501	0.650642	0.0843811	0.0684682	0.321641	0.0854769	0.0131054	0.643617	0.101587	0.269034	0.265347	0.310681	0.143956	0	0.629005	0.40064	0.149098	0.215013	2.22366	0.602522	0	0	0.11447	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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