|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060296 ID=TCONS_00060296|Name=TCONS_00060296|organism=Clytia hemisphaerica|type=transcript|length=2183bp
AGTCCAAGCTAAGAAACCGGCAGTCGAACTATACATCCTAACCGCCCCAG
CACAGGGTAGGTGACTCAATCGACTAGGAATTAACCTAAgctaaaattta
gctccaattAATTCTTGCGTCTCTCATTTTATAAGGTGTGGTCGAAACAT
CAAAAAGCCTTAGTAGCGGAGGGGAGTGTAAGAACCAAAGGAAACAAGAA
ATTGTAGACAAATATAATATGTGCCGAGACAGAAAAGTATATTTCGAATG
AAAGTGTAAGTAAAGTGTTTGCCGAAACTATAAAATTGGATTTGGGATAA
CATTGGGGATGCATCAATATCAAGCTAAGCTAATCCTATCCCGTGTTGAC
GACGGGAGCGACCTAGCCTGTGTTGATGACGGGAGCGACCTTAGCCCGTG
TTGATGACGGGAGCGACCTTAGCCCGTGTTGATGACGGGAGCGACCTAGC
CCGTGTTGATGACGGGTACTAACAGATCTATAAGTAAACTGACTACTGAC
TTGCCAAGGTTACGCAGTAACCCGACACCCCAAAGTCACCCCAAATCCAG
CAGAGAGATGTAAGAAGAGCAAAGGggcaaaaagaaaaggaaaatacaTA
AATTTTTTAGCTTTGATTCACATAATAGACTCAACTGTTTGTGGAGCACT
CTAGGGAAATTCTCCACAAGATAGATTTAATTCAAAGTATAAGGTAGGTT
ATATAGGTAAATAAAGTCAAATATACGGTTTAGTCAGTATATGAAATCTT
GATCACTGTGTCTACTGAAACAACCAGAGCACAAACAAAAGCTAAACAAA
TAATGTATATAAAATTACAGACTACCACCTATCGGGCTCCCAGACAGACG
AGACAAGGGAAACCTTAGCCATGTTGGAAGTAAACTTAGCAACATTTTTA
TCCGAGATGCGAAGGTATCGTAGGTAACAATCACTGGACCATCTTCCCAT
TAGGCGAATCATTGAGTCAGAAGCACCAGCAGCTAACGCGGTGGAGGCTC
CCCCGATACGGAAGCTGTGGGTATTCAAATCAAGTACCAAAGGAAGTGCG
TTTTGCAGTAAAGCGTGTATTCTTCGTCGTGTAAGAAATTTAAACAGTGG
ACCGTTTTGCGAGCCGTGAAGAGCCAGGTAATTCCTCATAGCACCCACCG
GGCAAAGGTTATCAAAGGTAGCAGAGATTCGAATTGTTACGCCTTGCCTA
AAAGGGTCGGTTTTACTAGCTTTAATTTGTAATGACATGATAGAAAACTC
GGTGTTGAAGCGCAGGTCTGATCTTAGCAGGTGAATGTTTTGGTCGTAGG
AACTGAGGGTAGGGCAAGTAAACTCGGAAACCCTTTAAGCCGAAAAATGC
GGTTAAGCAGGAAGCCAAAAGCATGTATTTGTCGTGCGGTGGGTGGCCAC
TGAGGAGcaaaaatttggatattttccGAAGGTGGGTCGTGGTGATCGGT
TTGCGTTTTTTGCGGGTTAGGGTGTTGCCTTGACGACGTTGGATGCCTCG
GATAACGCGGTGTAGAACGGGCATAAGGGATAGGGGTGCGTTTGCACCAA
GCATAGAGTTTTGATGCAAAACTCCAGTGATGTAAACTTTAGTGGTTTTG
CAAGCTATGCCACGATTTGATGAGTAGACCGCAAAGAAACACACACTCAT
ATAAGTTGATTGGGTAGAGGGGGCCAAGGAATCTTTTAGGAGTTCAACAA
GATCTTGGCCAAGAGATCCATTGTAGAGCTTGGTACTGTTGATGGGTACG
GACAAGATCCTGGACAGGCTAATTTGAATTCGTCTACCTGCAAACGAGAT
AGAGGGTCAGCGAAAATGTTATCAGAACCAGGAATGTGACGAAATGAGAG
GAGAATATTGTTCTTTGCAGTGATGAAGAAGACCTCACGAATAAGACaca
tcatttgtttatctttggcaGAAAGTGACGACCAAACAGAAAACGAGGGG
AGAGCATGAAGAATGTCAAAAGCAGTTTGGGCGGTATAGGCATTGGATGA
CTGGGTGAGGATAGTTGCAGATGATACAGCTATGGATGTATTGACAGGAA
GGCCGACATTGGCTGTTGTTGTTGAAGTTGTGGCAATGTCTCGAACTTGT
GGCAGCAGAGGCAGCTTGCTGGGGGGCAGGAAAGGGCTGACGAAGGGATG
GGTAAGGCTGGAAGTACTGGGTGCGTGGGAAGG Run BLAST on NCBI protein sequence of TCONS_00060296-protein >TCONS_00060296-protein ID=TCONS_00060296-protein|Name=TCONS_00060296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
PSHAPSTSSLTHPFVSPFLPPSKLPLLPQVRDIATTSTTTANVGLPVNTS
IAVSSATILTQSSNAYTAQTAFDILHALPSFSVWSSLSAKDKQMMCLIRE
VFFITAKNNILLSFRHIPGSDNIFADPLSRLQVDEFKLACPGSCPYPSTV
PSSTMDLLAKILLNS Run BLAST on NCBI transcript from alignment at scaffold_339:246460..248642 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060296 ID=TCONS_00060296|Name=TCONS_00060296|organism=Clytia hemisphaerica|type=transcript|length=2183bp|location=Sequence derived from alignment at scaffold_339:246460..248642 (Clytia hemisphaerica)
CCTTCCCACGCACCCAGTACTTCCAGCCTTACCCATCCCTTCGTCAGCCC
TTTCCTGCCCCCCAGCAAGCTGCCTCTGCTGCCACAAGTTCGAGACATTG
CCACAACTTCAACAACAACAGCCAATGTCGGCCTTCCTGTCAATACATCC
ATAGCTGTATCATCTGCAACTATCCTCACCCAGTCATCCAATGCCTATAC
CGCCCAAACTGCTTTTGACATTCTTCATGCTCTCCCCTCGTTTTCTGTTT
GGTCGTCACTTTCtgccaaagataaacaaatgatgtGTCTTATTCGTGAG
GTCTTCTTCATCACTGCAAAGAACAATATTCTCCTCTCATTTCGTCACAT
TCCTGGTTCTGATAACATTTTCGCTGACCCTCTATCTCGTTTGCAGGTAG
ACGAATTCAAATTAGCCTGTCCAGGATCTTGTCCGTACCCATCAACAGTA
CCAAGCTCTACAATGGATCTCTTGGCCAAGATCTTGTTGAACTCCTAAAA
GATTCCTTGGCCCCCTCTACCCAATCAACTTATATGAGTGTGTGTTTCTT
TGCGGTCTACTCATCAAATCGTGGCATAGCTTGCAAAACCACTAAAGTTT
ACATCACTGGAGTTTTGCATCAAAACTCTATGCTTGGTGCAAACGCACCC
CTATCCCTTATGCCCGTTCTACACCGCGTTATCCGAGGCATCCAACGTCG
TCAAGGCAACACCCTAACCCGCAAAAAACGCAAACCGATCACCACGACCC
ACCTTCggaaaatatccaaatttttgCTCCTCAGTGGCCACCCACCGCAC
GACAAATACATGCTTTTGGCTTCCTGCTTAACCGCATTTTTCGGCTTAAA
GGGTTTCCGAGTTTACTTGCCCTACCCTCAGTTCCTACGACCAAAACATT
CACCTGCTAAGATCAGACCTGCGCTTCAACACCGAGTTTTCTATCATGTC
ATTACAAATTAAAGCTAGTAAAACCGACCCTTTTAGGCAAGGCGTAACAA
TTCGAATCTCTGCTACCTTTGATAACCTTTGCCCGGTGGGTGCTATGAGG
AATTACCTGGCTCTTCACGGCTCGCAAAACGGTCCACTGTTTAAATTTCT
TACACGACGAAGAATACACGCTTTACTGCAAAACGCACTTCCTTTGGTAC
TTGATTTGAATACCCACAGCTTCCGTATCGGGGGAGCCTCCACCGCGTTA
GCTGCTGGTGCTTCTGACTCAATGATTCGCCTAATGGGAAGATGGTCCAG
TGATTGTTACCTACGATACCTTCGCATCTCGGATAAAAATGTTGCTAAGT
TTACTTCCAACATGGCTAAGGTTTCCCTTGTCTCGTCTGTCTGGGAGCCC
GATAGGTGGTAGTCTGTAATTTTATATACATTATTTGTTTAGCTTTTGTT
TGTGCTCTGGTTGTTTCAGTAGACACAGTGATCAAGATTTCATATACTGA
CTAAACCGTATATTTGACTTTATTTACCTATATAACCTACCTTATACTTT
GAATTAAATCTATCTTGTGGAGAATTTCCCTAGAGTGCTCCACAAACAGT
TGAGTCTATTATGTGAATCAAAGCTAAAAAATTTAtgtattttccttttc
tttttgccCCTTTGCTCTTCTTACATCTCTCTGCTGGATTTGGGGTGACT
TTGGGGTGTCGGGTTACTGCGTAACCTTGGCAAGTCAGTAGTCAGTTTAC
TTATAGATCTGTTAGTACCCGTCATCAACACGGGCTAGGTCGCTCCCGTC
ATCAACACGGGCTAAGGTCGCTCCCGTCATCAACACGGGCTAAGGTCGCT
CCCGTCATCAACACAGGCTAGGTCGCTCCCGTCGTCAACACGGGATAGGA
TTAGCTTAGCTTGATATTGATGCATCCCCAATGTTATCCCAAATCCAATT
TTATAGTTTCGGCAAACACTTTACTTACACTTTCATTCGAAATATACTTT
TCTGTCTCGGCACATATTATATTTGTCTACAATTTCTTGTTTCCTTTGGT
TCTTACACTCCCCTCCGCTACTAAGGCTTTTTGATGTTTCGACCACACCT
TATAAAATGAGAGACGCAAGAATTaattggagctaaattttagcTTAGGT
TAATTCCTAGTCGATTGAGTCACCTACCCTGTGCTGGGGCGGTTAGGATG
TATAGTTCGACTGCCGGTTTCTTAGCTTGGACT Coding sequence (CDS) from alignment at scaffold_339:246460..248642 >TCONS_00060296 ID=TCONS_00060296|Name=TCONS_00060296|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_339:246460..248642 (Clytia hemisphaerica)
CCTTCCCACGCACCCAGTACTTCCAGCCTTACCCATCCCTTCGTCAGCCC
TTTCCTGCCCCCCAGCAAGCTGCCTCTGCTGCCACAAGTTCGAGACATTG
CCACAACTTCAACAACAACAGCCAATGTCGGCCTTCCTGTCAATACATCC
ATAGCTGTATCATCTGCAACTATCCTCACCCAGTCATCCAATGCCTATAC
CGCCCAAACTGCTTTTGACATTCTTCATGCTCTCCCCTCGTTTTCTGTTT
GGTCGTCACTTTCtgccaaagataaacaaatgatgtGTCTTATTCGTGAG
GTCTTCTTCATCACTGCAAAGAACAATATTCTCCTCTCATTTCGTCACAT
TCCTGGTTCTGATAACATTTTCGCTGACCCTCTATCTCGTTTGCAGGTAG
ACGAATTCAAATTAGCCTGTCCAGGATCTTGTCCGTACCCATCAACAGTA
CCAAGCTCTACAATGGATCTCTTGGCCAAGATCTTGTTGAACTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060296-exon-scaffold_339-1491911889:246460..248642 | TCONS_00060296-exon-scaffold_339-1491911889:246460..248642 | Clytia hemisphaerica | exon |
| TCONS_00060296-exon-scaffold_339-1510915933:246460..248642 | TCONS_00060296-exon-scaffold_339-1510915933:246460..248642 | Clytia hemisphaerica | exon |
| TCONS_00060296-exon-scaffold_339-1575043694:246460..248642 | TCONS_00060296-exon-scaffold_339-1575043694:246460..248642 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:246460..248642 . |
Blast
The following BLAST results are available for this feature:
|
