TCONS_00060289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060289
Unique NameTCONS_00060289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060289 ID=TCONS_00060289|Name=TCONS_00060289|organism=Clytia hemisphaerica|type=transcript|length=296bp
GTTCCATTCGTTTCTTCCATCGATCAACTTTTCGATTGTTTGTTGATCAA
ACTTTTCCAAATGGTGAACTGTTCCTCTCCAAGCAACACGATGAAGAACG
TTCTGACCATAATTGTTCACGAGTGAAAAATCTTGAGGATAATTCATCAA
GTGAACGAAAACGTCGAAACGATCTCCAAGAACAGCATGCATGAGAAGTG
TCTGACCAAGACCATCACGCAACGAGTTGACGATGTCCGGTTTTTGGTGG
aaaatttcttcgaatttcgcgaatttcttttcgcgcaaaattttcc
Run BLAST on NCBI

transcript from alignment at scaffold_339:168515..168810

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060289 ID=TCONS_00060289|Name=TCONS_00060289|organism=Clytia hemisphaerica|type=transcript|length=296bp|location=Sequence derived from alignment at scaffold_339:168515..168810 (Clytia hemisphaerica)
ggaaaattttgcgcgaaaagaaattcgcgaaattcgaagaaattttCCAC
CAAAAACCGGACATCGTCAACTCGTTGCGTGATGGTCTTGGTCAGACACT
TCTCATGCATGCTGTTCTTGGAGATCGTTTCGACGTTTTCGTTCACTTGA
TGAATTATCCTCAAGATTTTTCACTCGTGAACAATTATGGTCAGAACGTT
CTTCATCGTGTTGCTTGGAGAGGAACAGTTCACCATTTGGAAAAGTTTGA
TCAACAAACAATCGAAAAGTTGATCGATGGAAGAAACGAATGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037925XLOC_037925Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060289-exon-scaffold_339-1491911889:168515..168810TCONS_00060289-exon-scaffold_339-1491911889:168515..168810Clytia hemisphaericaexon
TCONS_00060289-exon-scaffold_339-1510915933:168515..168810TCONS_00060289-exon-scaffold_339-1510915933:168515..168810Clytia hemisphaericaexon
TCONS_00060289-exon-scaffold_339-1575043694:168515..168810TCONS_00060289-exon-scaffold_339-1575043694:168515..168810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:168515..168810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.579764	0.433625	0.549428	0.499721	0.757969	0.574687	0	0	1.2141	1.14619	1.4192	2.72448	0	1.04827	0	1.12761	0.411839	1.51726	0	0	0	0	2.31713	3.11991	4.42533	1.0684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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