TCONS_00060288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060288
Unique NameTCONS_00060288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060288 ID=TCONS_00060288|Name=TCONS_00060288|organism=Clytia hemisphaerica|type=transcript|length=312bp
CTGGTATACAATTTTCTCCTTAGCAACAGGAAATCGCATCCGTTGCTAGG
GCCTCATTTCCGTATGGCTGCTCTAAACATAGCATCATGACATACCaaat
gaaagctctttttacgccctttttgggcgtctaagtcaataccgcctttt
ttcCCCGGGATTTCTtaatatgacgtaattaaagatggtaaccaAAGAAG
TGGTATACTCAAAAACATTCACATTTTGGAGGCAGTCAGCTGTGTTTTTG
ACATGGAAACTGAGCTTATGtattgttttggattgaattatgATATTATT
GAATGTTTCATT
Run BLAST on NCBI

transcript from alignment at scaffold_339:158657..158968

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060288 ID=TCONS_00060288|Name=TCONS_00060288|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at scaffold_339:158657..158968 (Clytia hemisphaerica)
AATGAAACATTCAATAATATcataattcaatccaaaacaataCATAAGCT
CAGTTTCCATGTCAAAAACACAGCTGACTGCCTCCAAAATGTGAATGTTT
TTGAGTATACCACTTCTTtggttaccatctttaattacgtcatattaAGA
AATCCCGGGgaaaaaaggcggtattgacttagacgcccaaaaagggcgta
aaaagagctttcatttGGTATGTCATGATGCTATGTTTAGAGCAGCCATA
CGGAAATGAGGCCCTAGCAACGGATGCGATTTCCTGTTGCTAAGGAGAAA
ATTGTATACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037924XLOC_037924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060288-exon-scaffold_339-1491911889:158657..158968TCONS_00060288-exon-scaffold_339-1491911889:158657..158968Clytia hemisphaericaexon
TCONS_00060288-exon-scaffold_339-1510915933:158657..158968TCONS_00060288-exon-scaffold_339-1510915933:158657..158968Clytia hemisphaericaexon
TCONS_00060288-exon-scaffold_339-1575043694:158657..158968TCONS_00060288-exon-scaffold_339-1575043694:158657..158968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:158657..158968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.15782	0	0.847546	1.42136	0	0.563823	3.3868	3.5624	0.987697	1.72316	0.147149	0	4.06524	2.57374	0	0	0	0	0.402598	1.06036	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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