TCONS_00060285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060285
Unique NameTCONS_00060285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060285 ID=TCONS_00060285|Name=TCONS_00060285|organism=Clytia hemisphaerica|type=transcript|length=421bp
GTTAGTAGTTTGAAGTTCAAGTCTTGTTGCACATTGTCATCATTATTTAC
CGATTATTAAAACGAGCCTATAAGCTTTATGCtagtaaatttttgatgat
aggatgttcttattttttgacactttgaaATTGTTCTCAGCTGTTCTTAT
TTCCAGGGAAATTGCCTTACCACTTGCCAAGTGAAGCCACGGTCCTTGAG
CTATCGACCGCAAGAGTCTATGCGATACATGTTACGTGATAATATCAAAT
TTGTAGAATAATGTTCTCTAGTTTTCCTTACGTACTAGCGCCGTAAATAA
TTCATTTTGAGATTGATCATCTAGCAGGGAATTTTGTTACGACTTTCGAT
AACATCAGGAAAGTATGTGAAGGAGGCACTTAAGAAATCAATCAAACAAC
TCATTTTTGAGCAGTAGCTGC
Run BLAST on NCBI

transcript from alignment at scaffold_339:18743..19163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060285 ID=TCONS_00060285|Name=TCONS_00060285|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at scaffold_339:18743..19163 (Clytia hemisphaerica)
GCAGCTACTGCTCAAAAATGAGTTGTTTGATTGATTTCTTAAGTGCCTCC
TTCACATACTTTCCTGATGTTATCGAAAGTCGTAACAAAATTCCCTGCTA
GATGATCAATCTCAAAATGAATTATTTACGGCGCTAGTACGTAAGGAAAA
CTAGAGAACATTATTCTACAAATTTGATATTATCACGTAACATGTATCGC
ATAGACTCTTGCGGTCGATAGCTCAAGGACCGTGGCTTCACTTGGCAAGT
GGTAAGGCAATTTCCCTGGAAATAAGAACAGCTGAGAACAATttcaaagt
gtcaaaaaataagaacatcctatcatcaaaaatttactaGCATAAAGCTT
ATAGGCTCGTTTTAATAATCGGTAAATAATGATGACAATGTGCAACAAGA
CTTGAACTTCAAACTACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037921XLOC_037921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060285-exon-scaffold_339-1491911889:18743..19163TCONS_00060285-exon-scaffold_339-1491911889:18743..19163Clytia hemisphaericaexon
TCONS_00060285-exon-scaffold_339-1510915933:18743..19163TCONS_00060285-exon-scaffold_339-1510915933:18743..19163Clytia hemisphaericaexon
TCONS_00060285-exon-scaffold_339-1575043694:18743..19163TCONS_00060285-exon-scaffold_339-1575043694:18743..19163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:18743..19163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.568439	0	0	0.356667	0	0.201423	0	0	0	0	0	0	0.0950256	0	0	0	0	0.186154	0	0	0	0	0	0.160355	0.229467	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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