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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060284 ID=TCONS_00060284|Name=TCONS_00060284|organism=Clytia hemisphaerica|type=transcript|length=1897bp
tagtaaatataaaaaatgaagcCCAAGTTCTCTATGCGTATacaccagaa
aaaaaatttcaaatcatcaaACCCATTGACAAAAGCGGAGGCGCATTGGT
TGTAAGAAAGCAAAcaagtgaaaaagaaaaacaattgaaGGCAGCTGAGG
CCTGGTGGAGAGAAAATGGCAAACATGGCTATGCAGCACTTAAAACAGGT
CAATTTCCCTTGATAAAAAGGACCGTGAAACAATTAATAAGCGACTTGAT
GGCAAAGTTGTAACTGGTGAAGAAAAATTGTATTGTAAAATCTTAACATC
ACAAGAAGAAAATATGATTGTACAATATCTGAAGAACAAAAACAGGTGTA
TGCAGGCAATTAACAAAAAGGAGCTTGAAAAATTGATACTTGATGTCCTT
CGAGTGCGAGACTACACCAACAGAAAATTAAAAGGTGATGTGTGCATGTG
CCAAGTGATTTTCAAATCCATAGGAATAACAAGTGCAATGGTCCCTCCTG
TAGCTGCAGAAAAGATACCTAACCTTCTAAAATGGAGTTTCTACTCACGA
AACCTTTCTTGCCGCTGCTCGTGAATTTGGAGCTGAAAGGAGTTGAAAGG
CCAGTAGTTTTACTATCAGATGGGCATAGTTCTCGGCTGAACCACAAGGT
TCTTGAATTCctcctttcaaaaaaaatacagcTGTTTGTGACACCACCAG
ACACAACAGGATAACTCAACTTTTGGACTAGTTAAACAAGAACATTCACC
aagagtatgaaaaagaaaaagcatcAATGTCTACTGACTTTAACACTTTA
AGTCGAGAAGCCTTCATGGTTATTCTAGCAAACATCTGAGATAAATGGGT
TTCCAAAGAGGGTATCATTAACGCTGCAAGAAAGGTTAGTATCACGTCAA
CAAAACTAAGCGTAGAGATGATGCAGCAAGATAAATTTGAAAGGGCTGCT
GCAGTTGTCGATACAAATAATGACGATGCAAACTCGTCTGCAATTTCAAC
ATCATCAACTTTGTCCATTGTCTCTCCTGATAAAAGACGTGGCTCACAgt
attggcaagataaattcaACCAGGCCATGGGTATCATAGATGAATTGCAT
GAAAAGAGCATCGTGCTGAAAGAAATCCCTGGTTTCTTGCCTGTGCAAAA
GGTTAAACCAAAGCTGTCTAAGAAAAATACAAGGATCACACAAGTCCATG
GATCAATGAAGGccaaaaatgtgctcactttaCTGAAAGACATCGAGAGT
AAGAAACAAGAGCAAGTCAAAAGTAAGGAAGCCACTGCCAAAAAAAAGGA
AGATACAAAACATGCATTTCTCAAGTGCAAAGAGAAATGTATTTGTGAAA
AACCAAAATGCGAAGCATTCGAGCTCAAGCAATGTCCAGTGTGTCAGGAC
ATTTTGAAGTCAGCTTGTAGTAAAGCCAAGTGCAAAGTTGATGGGATAAA
GCCAGTCATGATTGTTCCAGCAACAACTACAGCAAGTTCTTCCAAGAGGA
AAGCACCTGCTTCAGAAACCGAGGAAAGTGAATCAGATTTTGTTGATACT
GATTTTGATGATACCGAGAATGAGAGTGATTTTGCTGCAGATATCTTAAG
AGCAACTTGGAAAACACTCAGCCCTCCAGTGACTGAGGATTCTCTCTTGG
GGAAGTGGTATGGTGTAGTGTATTGTACAAAGCGCATTAGCAAGCCGTAT
GTTGGTAAAATCTTGAAACGTTTCTTGGCTGATGAAAACGGGCTTTTTGA
GAAATTGGAAGTTAGGTGCTTGAAGCCCAAAGTAGGCTCTGGTACCATTC
TTGAAGATACACCAGCTCATTTGCCAGATGTGTCACTGTTTGACTTAGCT
GATGTGATTTATGGTCCTCTGAAAGTGGTTCCTTTAAAATCTGATAN Run BLAST on NCBI protein sequence of TCONS_00060284-protein >TCONS_00060284-protein ID=TCONS_00060284-protein|Name=TCONS_00060284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MMQQDKFERAAAVVDTNNDDANSSAISTSSTLSIVSPDKRRGSQYWQDKF
NQAMGIIDELHEKSIVLKEIPGFLPVQKVKPKLSKKNTRITQVHGSMKAK
NVLTLLKDIESKKQEQVKSKEATAKKKEDTKHAFLKCKEKCICEKPKCEA
FELKQCPVCQDILKSACSKAKCKVDGIKPVMIVPATTTASSSKRKAPASE
TEESESDFVDTDFDDTENESDFAADILRATWKTLSPPVTEDSLLGKWYGV
VYCTKRISKPYVGKILKRFLADENGLFEKLEVRCLKPKVGSGTILEDTPA
HLPDVSLFDLADVIYGPLKVVPLKSD Run BLAST on NCBI transcript from alignment at scaffold_339:440863..442886- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060284 ID=TCONS_00060284|Name=TCONS_00060284|organism=Clytia hemisphaerica|type=transcript|length=2024bp|location=Sequence derived from alignment at scaffold_339:440863..442886- (Clytia hemisphaerica)
TAGTAAATATAAAAAATGAAGCCCAAGTTCTCTATGCGTATACACCAGAA
AAAAAATTTCAAATCATCAAACCCATTGACAAAAGCGGAGGCGCATTGGT
TGTAAGAAAGCAAACAAGTGAAAAAGAAAAACAATTGAAGGCAGCTGAGG
CCTGGTGGAGAGAAAATGGCAAACATGGCTATGCAGCACTTAAAACAGGT
CAATTTCCCTTGATAAAAAGGACCGTGAAACAATTAATAAGCGACTTGAT
GGCAAAGTTGTAACTGGTGAAGAAAAATTGTATTGTAAAATCTTAACATC
ACAAGAAGAAAATATGATTGTACAATATCTGAAGAACAAAAACAGGTGTA
TGCAGGCAATTAACAAAAAGGAGCTTGAAAAATTGATACTTGATGTCCTT
CGAGTGCGAGACTACACCAACAGAAAATTAAAAGGTGGACAGAAATTTGT
CAAGCTGTCACCAAAACTGTTTTTCTAGTTTCTGCTGTCATCTGTGACAC
AATCTCTGTGACTCTTACAACTTAGAACAAGAAAGATGATATATAATCAT
CTTCATTTCAGGTGATGTGTGCATGTGCCAAGTGATTTTCAAATCCATAG
GAATAACAAGTGCAATGGTCCCTCCTGTAGCTGCAGAAAAGATACCTAAC
CTTCTAAAATGGAGTTTCTACTCACGAAACCTTTCTTGCCGCTGCTCGTG
AATTTGGAGCTGAAAGGAGTTGAAAGGCCAGTAGTTTTACTATCAGATGG
GCATAGTTCTCGGCTGAACCACAAGGTTCTTGAATTCCTCCTTTCAAAAA
AAATACAGCTGTTTGTGACACCACCAGACACAACAGGATAACTCAACTTT
TGGACTAGTTAAACAAGAACATTCACCAAGAGTATGAAAAAGAAAAAGCA
TCAATGTCTACTGACTTTAACACTTTAAGTCGAGAAGCCTTCATGGTTAT
TCTAGCAAACATCTGAGATAAATGGGTTTCCAAAGAGGGTATCATTAACG
CTGCAAGAAAGGTTAGTATCACGTCAACAAAACTAAGCGTAGAGATGATG
CAGCAAGATAAATTTGAAAGGGCTGCTGCAGTTGTCGATACAAATAATGA
CGATGCAAACTCGTCTGCAATTTCAACATCATCAACTTTGTCCATTGTCT
CTCCTGATAAAAGACGTGGCTCACAGTATTGGCAAGATAAATTCAACCAG
GCCATGGGTATCATAGATGAATTGCATGAAAAGAGCATCGTGCTGAAAGA
AATCCCTGGTTTCTTGCCTGTGCAAAAGGTTAAACCAAAGCTGTCTAAGA
AAAATACAAGGATCACACAAGTCCATGGATCAATGAAGGCCAAAAATGTG
CTCACTTTACTGAAAGACATCGAGAGTAAGAAACAAGAGCAAGTCAAAAG
TAAGGAAGCCACTGCCAAAAAAAAGGAAGATACAAAACATGCATTTCTCA
AGTGCAAAGAGAAATGTATTTGTGAAAAACCAAAATGCGAAGCATTCGAG
CTCAAGCAATGTCCAGTGTGTCAGGACATTTTGAAGTCAGCTTGTAGTAA
AGCCAAGTGCAAAGTTGATGGGATAAAGCCAGTCATGATTGTTCCAGCAA
CAACTACAGCAAGTTCTTCCAAGAGGAAAGCACCTGCTTCAGAAACCGAG
GAAAGTGAATCAGATTTTGTTGATACTGATTTTGATGATACCGAGAATGA
GAGTGATTTTGCTGCAGATATCTTAAGAGCAACTTGGAAAACACTCAGCC
CTCCAGTGACTGAGGATTCTCTCTTGGGGAAGTGGTATGGTGTAGTGTAT
TGTACAAAGCGCATTAGCAAGCCGTATGTTGGTAAAATCTTGAAACGTTT
CTTGGCTGATGAAAACGGGCTTTTTGAGAAATTGGAAGTTAGGTGCTTGA
AGCCCAAAGTAGGCTCTGGTACCATTCTTGAAGATACACCAGCTCATTTG
CCAGATGTGTCACTGTTTGACTTAGCTGATGTGATTTATGGTCCTCTGAA
AGTGGTTCCTTTAAAATCTGATAN Coding sequence (CDS) from alignment at scaffold_339:440863..442886- >TCONS_00060284 ID=TCONS_00060284|Name=TCONS_00060284|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_339:440863..442886- (Clytia hemisphaerica)
ATGATGCAGCAAGATAAATTTGAAAGGGCTGCTGCAGTTGTCGATACAAA
TAATGACGATGCAAACTCGTCTGCAATTTCAACATCATCAACTTTGTCCA
TTGTCTCTCCTGATAAAAGACGTGGCTCACAGTATTGGCAAGATAAATTC
AACCAGGCCATGGGTATCATAGATGAATTGCATGAAAAGAGCATCGTGCT
GAAAGAAATCCCTGGTTTCTTGCCTGTGCAAAAGGTTAAACCAAAGCTGT
CTAAGAAAAATACAAGGATCACACAAGTCCATGGATCAATGAAGGCCAAA
AATGTGCTCACTTTACTGAAAGACATCGAGAGTAAGAAACAAGAGCAAGT
CAAAAGTAAGGAAGCCACTGCCAAAAAAAAGGAAGATACAAAACATGCAT
TTCTCAAGTGCAAAGAGAAATGTATTTGTGAAAAACCAAAATGCGAAGCA
TTCGAGCTCAAGCAATGTCCAGTGTGTCAGGACATTTTGAAGTCAGCTTG
TAGTAAAGCCAAGTGCAAAGTTGATGGGATAAAGCCAGTCATGATTGTTC
CAGCAACAACTACAGCAAGTTCTTCCAAGAGGAAAGCACCTGCTTCAGAA
ACCGAGGAAAGTGAATCAGATTTTGTTGATACTGATTTTGATGATACCGA
GAATGAGAGTGATTTTGCTGCAGATATCTTAAGAGCAACTTGGAAAACAC
TCAGCCCTCCAGTGACTGAGGATTCTCTCTTGGGGAAGTGGTATGGTGTA
GTGTATTGTACAAAGCGCATTAGCAAGCCGTATGTTGGTAAAATCTTGAA
ACGTTTCTTGGCTGATGAAAACGGGCTTTTTGAGAAATTGGAAGTTAGGT
GCTTGAAGCCCAAAGTAGGCTCTGGTACCATTCTTGAAGATACACCAGCT
CATTTGCCAGATGTGTCACTGTTTGACTTAGCTGATGTGATTTATGGTCC
TCTGAAAGTGGTTCCTTTAAAATCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060284-exon-scaffold_339-1575043694:442453..442886 | TCONS_00060284-exon-scaffold_339-1575043694:442453..442886 | Clytia hemisphaerica | exon |
| TCONS_00060284-exon-scaffold_339-1575043694:440863..442325 | TCONS_00060284-exon-scaffold_339-1575043694:440863..442325 | Clytia hemisphaerica | exon |
| TCONS_00060284-exon-scaffold_339-1510915933:442453..442886 | TCONS_00060284-exon-scaffold_339-1510915933:442453..442886 | Clytia hemisphaerica | exon |
| TCONS_00060284-exon-scaffold_339-1510915933:440863..442325 | TCONS_00060284-exon-scaffold_339-1510915933:440863..442325 | Clytia hemisphaerica | exon |
| TCONS_00060284-exon-scaffold_339-1491911889:442453..442886 | TCONS_00060284-exon-scaffold_339-1491911889:442453..442886 | Clytia hemisphaerica | exon |
| TCONS_00060284-exon-scaffold_339-1491911889:440863..442325 | TCONS_00060284-exon-scaffold_339-1491911889:440863..442325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:440863..442886 - |
Blast
The following BLAST results are available for this feature:
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