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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060283 ID=TCONS_00060283|Name=TCONS_00060283|organism=Clytia hemisphaerica|type=transcript|length=2547bpRun BLAST on NCBI protein sequence of TCONS_00060283-protein >TCONS_00060283-protein ID=TCONS_00060283-protein|Name=TCONS_00060283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp MTFNSLVAGECGGANPLMKLTEHVHNHSHSERTVDQYKKENGLSNIAIPQRun BLAST on NCBI transcript from alignment at scaffold_339:416197..428252- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060283 ID=TCONS_00060283|Name=TCONS_00060283|organism=Clytia hemisphaerica|type=transcript|length=12056bp|location=Sequence derived from alignment at scaffold_339:416197..428252- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_339:416197..428252- >TCONS_00060283 ID=TCONS_00060283|Name=TCONS_00060283|organism=Clytia hemisphaerica|type=CDS|length=29274bp|location=Sequence derived from alignment at scaffold_339:416197..428252- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060283 vs. Swiss-Prot (Human)
Match: PEX5 (Peroxisomal targeting signal 1 receptor OS=Homo sapiens GN=PEX5 PE=1 SV=3) HSP 1 Score: 397.512 bits (1020), Expect = 2.662e-126 Identity = 238/644 (36.96%), Postives = 336/644 (52.17%), Query Frame = 2
Query: 305 MTFNSLVAGECGGANPLMKLTEHVHNH------------------------------SHSERTVDQYKKENGLSNIAIPQTFNMQNLLDEMQDL---------QRPVGMANISHVENTAR------------------DWQQDYTSQY-HPKMITP-----------KPDVRLKEVRSANVDNRFNHFQPSYQPVFRPPPSISMQRNSQQNWAHQFLDDSLKEVEH-RDREEEKTGKEILESLEAEGDL-SKQWVDEFSKKESV----IXXXXXXXXXXXXXXYLNSIPDVTDADVEYWEKLQKDFDELFKNESLMN---NEEHSLNSPVSEKEYSFEDSNPFSGHKNPFEEGVKKLNEGDLISAILLFEEAVTQQPEHAEAWQYLGTSQAENEQEFLSIKALNKCVELQPDNLEAWMALSVSYTNESMYLQACQSLKSWIKNNPKYENILSNQLIPTGDLKSEARSNILSSSLVSTETLKEVENIFLTAARLSPQQTIDPQIQIGLGILFNISHEYEKAIDCFKTGLQVKPDSALLWNKLGATLANSGKSAEAIEAYRNALSLRPGFIRCRYNLGISCINLKAYDTAIEHFLSALNMQRQGEDPTRTASTMSENIWDTLRMTMSLHGRSDLLKAVEKRDLGVI 2002
M LV ECGGANPLMKL H S E + + +N PQTF M +LL EMQ + QR G+A+++ EN A+ DW Q++ S+ P ++P + + L E D ++ + P +++ ++ + D L E + + G+ LES G ++QW EF +++ + Q + ++DV++W+KLQ + +E+ K ++ + ++ L S +K Y FE+ NP H PFEEG+++L EGDL +A+LLFE AV Q P+H EAWQYLGT+QAENEQE L+I AL +C+EL+PDN A MAL+VS+TNES+ QAC++L+ W++ P Y ++++ G IL S L+S EV+ +FL A RL P +IDP +Q GLG+LFN+S EY+KA+DCF L V+P+ LLWNKLGATLAN +S EA+ AYR AL L+PG+IR RYNLGISCINL A+ A+EHFL ALNMQR+ P MSENIW TLR+ +S+ G+SD A + RDL +
Sbjct: 1 MAMRELVEAECGGANPLMKLAGHFTQDKALRQEGLRPGPWPPGAPASEAASKPLGVASEDELVAEFLQDQNAPLVSRAPQTFKMDDLLAEMQQIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDAVDVTQDYNETDWSQEFISEVTDPLSVSPARWAEEYLEQSEEKLWLGEPEGTATDRWYDEYHPEED-----------LQHTASDFVAKVDDPKLANSEFLKFVRQIGEGQVSLESGAGSGRAQAEQWAAEFIQQQGTSDAWVDQFTRPVNTSALDMEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 631 The following BLAST results are available for this feature:
BLAST of TCONS_00060283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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