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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060282 ID=TCONS_00060282|Name=TCONS_00060282|organism=Clytia hemisphaerica|type=transcript|length=1367bpRun BLAST on NCBI protein sequence of TCONS_00060282-protein >TCONS_00060282-protein ID=TCONS_00060282-protein|Name=TCONS_00060282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp MASQAHMSHEVVPDALPYIDQGYDEASVHTMVNELIEEETKRYRPTKNYLRun BLAST on NCBI transcript from alignment at scaffold_339:383571..405382- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060282 ID=TCONS_00060282|Name=TCONS_00060282|organism=Clytia hemisphaerica|type=transcript|length=21812bp|location=Sequence derived from alignment at scaffold_339:383571..405382- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_339:383571..405382- >TCONS_00060282 ID=TCONS_00060282|Name=TCONS_00060282|organism=Clytia hemisphaerica|type=CDS|length=5160bp|location=Sequence derived from alignment at scaffold_339:383571..405382- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060282 vs. Swiss-Prot (Human)
Match: SPF27 (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 5.076e-74 Identity = 111/212 (52.36%), Postives = 157/212 (74.06%), Query Frame = 2
Query: 113 MASQAHMSHEVVPDALPYIDQGYDEASVHTMVNELIEEETKRYRPTKNYLEFMPPANYSQFETKLMKTEFERISNRQPMELLSMKRYELPQPPANQKNDISAWTDCLKNSMAQLQHQSERVANLDLLSQYGTDSWRSHCEILQRMFEAQQRKHAEIKRRIQEINWERKSDQKKAGSDLQHLEESWIGLVSKNYEIERAIVETEKEVETLRQE 748
MA ++ EVV DALPY DQGY+ V L+EEET+RYRPTKNYL ++ +YS FET +M+ EFER++ RQP+ELLSMKRYELP P + QKNDI+AW +C+ NSMAQL+HQ+ R+ NL+L+SQ+G ++W+ + E L M E Q++ ++++ IQ++NW+RK+ Q AGS L+ +E +W+ LVSKNYEIER IV+ E E+ ++Q+
Sbjct: 1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQ 212 The following BLAST results are available for this feature:
BLAST of TCONS_00060282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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