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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060274 ID=TCONS_00060274|Name=TCONS_00060274|organism=Clytia hemisphaerica|type=transcript|length=1385bp
TTCAGATTGAATaagtaataaaaaaacaaatatgaaTTTATGGATGTATT
ATGAATGAGTTAAATGGACCTCATAATCAAATTGGAACAATTAAAAAATG
TCTTTCCAAATCTTGGACTGCAAAAGTGGATGTTTTCAGGAATTGACCAT
CGTCAGTAAACTCGACAAGGGTGCATTTGGAGATGTTTACAAAGTGGAGG
ATGCAAGAAAACATGTTTTCGCTTTAAGGAAAATGACCCCTGAACATTAT
TTAAATACAAAAAACAATAGCGCCTCGAATGATAAACTTTATCAGGATGT
TGTTGGTAATTTGCTATATACCATGTCCTGCTTAAAACACCCTCATATTG
TTCAATTGTATGCTTTCGATTTTGAAAGTACATCTACATTACTAGTTATG
GAGTTTTGTCCTGGAGGAAACTTGAATAACCGATTACGTGACCCTGTCAA
TATGAAACAAAAGTTTGACTGGATGTCACAATTACTGGAAGCAATGACTT
ACCTCCATAACAATAATTTTGTTCACAGAAACTTCAAACCTGAAAATGTG
CTGCTTGGTAATAGAGGGCAGgcaaaaatggctgattttggACTTGCTCG
ACCGTTTTTAACGCGAGATttgaaaaataacgaagatTACCTTTCAGAAT
ACGAAGACATGTTTATGGACAAATATGCAGGTACCATGTATTGGATTGCT
CCTGAAGTCTTTGATCGAAAATATACAGAAAAGGCTGACATTTTCTCGCT
TGGGGTGATATTCTATGCTATTTTGAcaaggaaatatttaacttaTCAAG
GTGAATCTTATTATTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTT
GGCCTTGGACTTGCTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTT
CGAGGGATTGAAAGAGACAATAGAACAAGATATTGCAAACAATGTAATCA
AAAGTCTGCTTTGTTATGATTACAATAAAAGAATGAGTCTAGACCAAGCA
CACTCTTTCATTTTTGACGCACtcgctaaaattgaaaaacaatgcGAGAA
ATCAGTACTTGAAGCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGG
TAGCCGGCTATTTCTTTAagCGTTTTGTACCGGGATTTGCTGCATGTTTC
GACGAAGGGAAACATGTTGTTGGGAATATCGACAATACTGAACAAAAGGA
TGGAGAAGGAAATGTTCCTCGTGAACCTTCTGATCGGCCTGGAAGTGAAA
ATGCGAATCAAAATATTTGTTCTGTCTCATCTCAGATAGAttcaaaaaat
gatgttttgaaaaacttcGAACAACATTATTCCTGTCCTATTTGTTTGGA
CATCGTCTGCGAAGCAGTTGAGTGTAAAGTTTGCC Run BLAST on NCBI transcript from alignment at scaffold_339:231369..234427- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060274 ID=TCONS_00060274|Name=TCONS_00060274|organism=Clytia hemisphaerica|type=transcript|length=3059bp|location=Sequence derived from alignment at scaffold_339:231369..234427- (Clytia hemisphaerica)
TTCAGATTGAATAAGTAATAAAAAAACAAATATGAATTTATGGATGTATT
ATGAATGAGTTAAATGGACCTCATAATCAAATTGGAACAATTAAAAAATG
TCTTTCCAAATCTTGGACTGCAAAAGTGGATGTTTTCAGGAATTGACCAT
CGTCAGTAAACTCGACAAGGGTGCATTTGGAGATGTTTACAAAGTGGAGG
ATGCAAGAAAACATGTTTTCGCTTTAAGGAAAATGACCCCTGAACATTAT
TTAAATACAAAAAACAATAGCGCCTCGAATGATAAACTTTATCAGGATGT
TGTTGGTAATTTGCTATATACCATGTCCTGCTTAAAACACCCTCATATTG
TTCAATTGTATGCTTTCGATTTTGAAAGTACATCTACATTACTAGTTATG
GAGTTTTGTCCTGGAGGAAACTTGAATAACCGATTACGTGACCCTGTCAA
TATGAAACAAAAGTTTGACTGGATGTCACAATTACTGGAAGCAATGACTT
ACCTCCATAACAATAATTTTGTTCACAGAAACTTCAAACCTGAAAATGTG
CTGCTTGGTAATAGAGGGCAGGCAAAAATGGCTGATTTTGGACTTGCTCG
ACCGTTTTTAACGCGAGATTTGAAAAATAACGAAGATTACCTTTCAGAAT
ACGAAGACATGTTTATGGACAAATATGCAGGTACCATGTATTGGATTGCT
CCTGAAGTCTTTGATCGAAAATATACAGAAAAGGCTGACATTTTCTCGCT
TGGGGTGATATTCTATGCTATTTTGACAAGGAAATATTTAACTTATCAAG
GTGAATCTTATTATTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTT
GGCCTTGGACTTGCTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTT
CGAGGGATTGAAAGAGACAATAGAACAAGATATTGCAAACAATGTAATCA
AAAGTCTGCTTTGTTATGATTACAATAAAAGAATGAGTCTAGACCAAGCA
CACTCTTTCATTTTTGACGCACTCGCTAAAATTGAAAAACAATGCGAGAA
ATCAGTACTTGAAGCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGG
TAGCCGGCTATTTCTTTAGTAAGTATTTTGTGGGCGAGGTTTTCTTAGGA
TACACGACATTTTGACATCTTTAATTACCTTATTTTGGGGTTATTTAGAC
GTTTGTTAAAATTTGAAGATTTTTCCAACCCCTCCCACCATTTATGAGAC
ACCTGAGAGTAAGATGTTTGAGTAAGATGTTTAAACATCTTGAGAACAAG
ATGTGTTGTCTGTTTGGATTAGATATCTGGACGGGTTGGATGTATACTTT
TTTGAGTTGAAAGTGACAGCTATGAGTATTAAGTACAAGGTATTTTGTTT
TAGAAATGGCATCCCATATTTTTCTTGATGATTAAAAAGAAGAACAAGTT
TCTAGATACACTTTTTTTATAAGCTTAACGTTTATAAGCATACGTAGGCT
CACTTTTTGGTACCTAAACAATGGCTCTATTGTTTAAGAACAATCGAATG
CTAATCATAATGCGAGCCTCGTATAGGTGTAGACGCTTGCTTATAAAAAC
AAAGTGTTGGGGTCCCTTTTTGAAACCCCTAAAAAGGGGTTGATGGTATT
TAAGTTTTATTTTAAAATCGTGTTCTATGGAATCTATGGTCGTTTCTTGT
ATTTATTGAAGAGAACATTGTGTACCAATAATTTGAAGTACTTTTACTGT
AGAACAAAAAAGAAGCTAAAGTTTAGCTTGAATGATATATAATGCCCGAT
GTCCGATTTTGAGCTTTGGCCTGGTCAAATAATAAAAGTCTCATTGTATA
CAGGGTGTCTCGAAAAAAAATCATGTGTTAAAACATGACTAAAAGTAGAA
AAAACTCGTGTGTCTATGTCAAAATTAAGTATTTACGTTAGGGTTTCATT
ACACATTTTTTAGTACGTGTATTGATTTTATAGTTTTAAAAAAATGTTTT
ATTACAGAATTGATATTTTGATTATGTTTTTATAAGTTTGCTTCGTTGTA
ACCATTTAAGTATTACTTAAAGGTTTTCTACGGGAATAAAAGGAGCTTAT
TTTAGGCAGTGCCTTTATGTTGAGTCAGATAAATAAAAGCTACTTTTTTA
CGCAACGACATCCTGCAAACAAGTGAAAGATCGAAAGTTGTTTCGAGATG
TGACCTCACATTCTATTGCTTTTGTAAACAAAAAATAGCAAAGTTGATTT
CAAACAAATTTACAATCGAATGTTTTGATTATAAGACGCTCTATTTATTA
TAAACATAAAGCATTCGAAAGAGTATCAGTAAAAGTCCCTTTGTTTGAGA
AATGTTTTTTTATTCAATGTATTTTCATTTTTTCAAAACCTTTTTCTAAT
CTTGTCGCGTTTGTTTTTACTACATCAGCATCGTCAGACCTTTCAATCAA
AACAAAACCTTTAATGTGTTTGTGAGAAACATAAAAACTTTTCTACTTGT
AGTCGTGTTCTAACACAGGACTTTTTTTCGGAACACCCTGTATGATATTT
TCACCCTTTTAAGTTAATATTTCCTTGTTTGTTTTCTTTATTTAGAGCGT
TTTGTACCGGGATTTGCTGCATGTTTCGACGAAGGGAAACATGTTGTTGG
GAATATCGACAATACTGAACAAAAGGATGGAGAAGGAAATGTTCCTCGTG
AACCTTCTGATCGGCCTGGAAGTGAAAATGCGAATCAAAATATTTGTTCT
GTCTCATCTCAGAGTAGGTGGTCATTGTTTTCAATTATGCTCATATGGGC
TAATCTAAAGATCCTCATATCCTACATCTGTGTTGTTATTTCTCCTCATT
TAACATTGAAATTTCACATGACTTGTTCGATTTGTTCACGACACTCGCAG
CCATTCCTTTTTCTTTCAAAAAATCCATTTTCTTACTTTCATTCTCTTCA
AATCTTTCAGTAGATTCAAAAAATGATGTTTTGAAAAACTTCGAACAACA
TTATTCCTGTCCTATTTGTTTGGACATCGTCTGCGAAGCAGTTGAGTGTA
AAGTTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060274-exon-scaffold_339-1575043694:233310..234427 | TCONS_00060274-exon-scaffold_339-1575043694:233310..234427 | Clytia hemisphaerica | exon |
| TCONS_00060274-exon-scaffold_339-1575043694:231665..231832 | TCONS_00060274-exon-scaffold_339-1575043694:231665..231832 | Clytia hemisphaerica | exon |
| TCONS_00060274-exon-scaffold_339-1575043694:231369..231467 | TCONS_00060274-exon-scaffold_339-1575043694:231369..231467 | Clytia hemisphaerica | exon |
| TCONS_00060274-exon-scaffold_339-1510915933:233310..234427 | TCONS_00060274-exon-scaffold_339-1510915933:233310..234427 | Clytia hemisphaerica | exon |
| TCONS_00060274-exon-scaffold_339-1510915933:231665..231832 | TCONS_00060274-exon-scaffold_339-1510915933:231665..231832 | Clytia hemisphaerica | exon |
| TCONS_00060274-exon-scaffold_339-1510915933:231369..231467 | TCONS_00060274-exon-scaffold_339-1510915933:231369..231467 | Clytia hemisphaerica | exon |
| TCONS_00060274-exon-scaffold_339-1491911889:233310..234427 | TCONS_00060274-exon-scaffold_339-1491911889:233310..234427 | Clytia hemisphaerica | exon |
| TCONS_00060274-exon-scaffold_339-1491911889:231665..231832 | TCONS_00060274-exon-scaffold_339-1491911889:231665..231832 | Clytia hemisphaerica | exon |
| TCONS_00060274-exon-scaffold_339-1491911889:231369..231467 | TCONS_00060274-exon-scaffold_339-1491911889:231369..231467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:231369..234427 - |
Blast
BLAST of TCONS_00060274 vs. Swiss-Prot (Human)
Match: PDK1L (Serine/threonine-protein kinase PDIK1L OS=Homo sapiens GN=PDIK1L PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.685e-23 Identity = 65/186 (34.95%), Postives = 104/186 (55.91%), Query Frame = 2
Query: 362 AFDFESTSTL-LVMEFCPGGNLNNRL--RDPVNMKQKFDWMSQLLEAMTYLHNNNFVHRNFKPENVLLGN--------RGQAKMADFGLARPFLTRDLKNNEDYLSEYEDMFMDKYAGTMYWIAPEVFDRKYTEKADIFSLGVIFYAILTR-KYLTYQGESYYYGAFVEHHGKEVGLGLAMHRSEK 883
AFD S L VM+FC GG++N L R P N K +M QL A+ +LH N +HR+ KP+N+L+ K+ADFGL++ + +N E+ +S F+ GT +++APEV++ YT KADIF+LG+I +A+L R ++ + + G++V+ + V +G A+ + K
Sbjct: 106 AFDPRSAYYLWFVMDFCDGGDMNEYLLSRKP-NRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQTRLDTSDLEPTLKVADFGLSK-VCSASGQNPEEPVS-VNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPK 288
The following BLAST results are available for this feature:
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