TCONS_00060273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060273
Unique NameTCONS_00060273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3125

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060273 ID=TCONS_00060273|Name=TCONS_00060273|organism=Clytia hemisphaerica|type=transcript|length=3125bp
TTCAGATTGAATaagtaataaaaaaacaaatatgaaTTTATGGATGTATT
ATGAATGAGTTAAATGGACCTCATAATCAAATTGGAACAATTAAAAAATG
TCTTTCCAAATCTTGGACTGCAAAAGTGGATGTTTTCAGGAATTGACCAT
CGTCAGTAAACTCGACAAGGGTGCATTTGGAGATGTTTACAAAGTGGAGG
ATGCAAGAAAACATGTTTTCGCTTTAAGGAAAATGACCCCTGAACATTAT
TTAAATACAAAAAACAATAGCGCCTCGAATGATAAACTTTATCAGGATGT
TGTTGGTAATTTGCTATATACCATGTCCTGCTTAAAACACCCTCATATTG
TTCAATTGTATGCTTTCGATTTTGAAAGTACATCTACATTACTAGTTATG
GAGTTTTGTCCTGGAGGAAACTTGAATAACCGATTACGTGACCCTGTCAA
TATGAAACAAAAGTTTGACTGGATGTCACAATTACTGGAAGCAATGACTT
ACCTCCATAACAATAATTTTGTTCACAGAAACTTCAAACCTGAAAATGTG
CTGCTTGGTAATAGAGGGCAGgcaaaaatggctgattttggACTTGCTCG
ACCGTTTTTAACGCGAGATttgaaaaataacgaagatTACCTTTCAGAAT
ACGAAGACATGTTTATGGACAAATATGCAGGTACCATGTATTGGATTGCT
CCTGAAGTCTTTGATCGAAAATATACAGAAAAGGCTGACATTTTCTCGCT
TGGGGTGATATTCTATGCTATTTTGAcaaggaaatatttaacttaTCAAG
GTGAATCTTATTATTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTT
GGCCTTGGACTTGCTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTT
CGAGGGATTGAAAGAGACAATAGAACAAGATATTGCAAACAATGTAATCA
AAAGTCTGCTTTGTTATGATTACAATAAAAGAATGAGTCTAGACCAAGCA
CACTCTTTCATTTTTGACGCACtcgctaaaattgaaaaacaatgcGAGAA
ATCAGTACTTGAAGCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGG
TAGCCGGCTATTTCTTTAagCGTTTTGTACCGGGATTTGCTGCATGTTTC
GACGAAGGGAAACATGTTGTTGGGAATATCGACAATACTGAACAAAAGGA
TGGAGAAGGAAATGTTCCTCGTGAACCTTCTGATCGGCCTGGAAGTGAAA
ATGCGAATCAAAATATTTGTTCTGTCTCATCTCAGATAGAttcaaaaaat
gatgttttgaaaaacttcGAACAACATTATTCCTGTCCTATTTGTTTGGA
CATCGTCTGCGAAGCAGTTGAGTGTAAAGTTTGCCACAAGCTGTATTGCG
ATGAGTGTGTCCGAGAATTGAACACGTGTCCGAGCTGCTGCCAACCATTT
AACACTCAGCCCAACAAAAATGTCCGACAATTTATCGGGAATTTGAAAAC
GAAATGCCCAAACGAAGAATGCCGTGAAAAACCAACTCGATCAAATCTTC
AAGAACATTTAAAGAAATGTGAATGGGCGTTGACATTGTGTGAAAATGAA
GGTTGTGAATTAGAATTTCGGAGAATAGATTTGCCGAAACATCTTTTCGA
TTGTTCGTATCAGATCGTATTTTGTAGATCGGTCGGCTGTAAAGAGTCGT
TTCCCCGAAAGCgcttttttcttcataaaaacgAGTGTTTGTTCTCTCCT
GTCAGATGCTTGGATTGTTTGCAGTTATATCTCAAAAAAGACGAAACCGT
TCATTTTAAGATGTGCAAGCGCAAGAAAATCGAATGTCCTATCTGTCAGC
TTGAAGGAACGAGGTTGGACATTTTACATCATGGTGTAGATATACATTAT
GATAATGTGGTGACACCCTTCTACCAATCGATGGTGGTTTCTGCTTCGTC
CTCAAGCCATCAACCAATATCGCAAGAAGAGGACAGGTTATTCGCGGAGT
TGGATTGTATTTGAAATTTCGATTAAACTTGTAAATATAATATGACGGAG
CCAACCCTTAGGATCCTCAGCATCTTTCGTGGACGCAATatacctttttg
accgtagccgccaattgccgcatgggcattttttatccattttaccaccc
taaaaccgtcctaTTCTTTTTTACGCACCTAAAGACAACAGaagaaagtg
taaaaaaggattggatcgagtttagggtggtaaattaaataatagaattg
cacgcgcctgaccgcgccaaaaaggtgtattacatCTTATTGGTTTGACA
GTAGATaggattttgaaactttttagaGAGGGGCCACGGATCAGGCCTGA
CAAAAATTTTAATGGCCGAAAGACTGACGTTACAGACAGAATTCTTAACC
TCTAAAATAAGCGAAAATGACGAATTTTAAAAGGCGAATTCAACAGAAAT
GATTTCTTTTGgacattttaaaatatttttatcagcCTCATTTCGACGAG
TGCTTTTCTCCAACTTGTTCAGTAAACCGATTAGGGCACAAGTTACTTGC
GAGAAGAATTTCGAGTGGAAAGAACCAGAAAGAACAATATTGTTAAAAAT
GATTACTAGTAATTTAAAATGTCGGGGCTCAAAGGAAATTAAAGGGAGTT
TGAACCTTAATATTGTAGATTAACATTAAATTTAATATATAATTTCATTA
TAATCTTTTAGTATAAATTGATTAATTTTGTAAATGAAATTTCCgtgaat
taaaaaatatttttgttgaaatttgtccattttatatttttataattttc
gaaaattattttgtaagatatattttttttaatccacttttaatattttt
ttgtttttgtcttgcttaatttctttttagctCCTTGAACAGATGCTAAA
CCAAATACCAAATGGCTGTGCTATCTACAATAATTGTAGATTCACATTAA
ATGATAATTAAACTATAGGTATAGTATAGATTATAAATTTTTAGTAtaaa
tttattaattttgttattgAAATTTCCGTGAATTAAGAtagatatttttt
attgaaatttgtcctttttatgagtttttttcatattttttaaattttcg
aaatttcttttgtagaatttttttt
Run BLAST on NCBI

protein sequence of TCONS_00060273-protein

>TCONS_00060273-protein ID=TCONS_00060273-protein|Name=TCONS_00060273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp
MSFQILDCKSGCFQELTIVSKLDKGAFGDVYKVEDARKHVFALRKMTPEH
YLNTKNNSASNDKLYQDVVGNLLYTMSCLKHPHIVQLYAFDFESTSTLLV
MEFCPGGNLNNRLRDPVNMKQKFDWMSQLLEAMTYLHNNNFVHRNFKPEN
VLLGNRGQAKMADFGLARPFLTRDLKNNEDYLSEYEDMFMDKYAGTMYWI
APEVFDRKYTEKADIFSLGVIFYAILTRKYLTYQGESYYYGAFVEHHGKE
VGLGLAMHRSEKNIEPSFEGLKETIEQDIANNVIKSLLCYDYNKRMSLDQ
AHSFIFDALAKIEKQCEKSVLEATTNPPARRKPSVAGYFFKRFVPGFAAC
FDEGKHVVGNIDNTEQKDGEGNVPREPSDRPGSENANQNICSVSSQIDSK
NDVLKNFEQHYSCPICLDIVCEAVECKVCHKLYCDECVRELNTCPSCCQP
FNTQPNKNVRQFIGNLKTKCPNEECREKPTRSNLQEHLKKCEWALTLCEN
EGCELEFRRIDLPKHLFDCSYQIVFCRSVGCKESFPRKRFFLHKNECLFS
PVRCLDCLQLYLKKDETVHFKMCKRKKIECPICQLEGTRLDILHHGVDIH
YDNVVTPFYQSMVVSASSSSHQPISQEEDRLFAELDCI
Run BLAST on NCBI

transcript from alignment at scaffold_339:229296..234427-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060273 ID=TCONS_00060273|Name=TCONS_00060273|organism=Clytia hemisphaerica|type=transcript|length=5132bp|location=Sequence derived from alignment at scaffold_339:229296..234427- (Clytia hemisphaerica)
TTCAGATTGAATAAGTAATAAAAAAACAAATATGAATTTATGGATGTATT
ATGAATGAGTTAAATGGACCTCATAATCAAATTGGAACAATTAAAAAATG
TCTTTCCAAATCTTGGACTGCAAAAGTGGATGTTTTCAGGAATTGACCAT
CGTCAGTAAACTCGACAAGGGTGCATTTGGAGATGTTTACAAAGTGGAGG
ATGCAAGAAAACATGTTTTCGCTTTAAGGAAAATGACCCCTGAACATTAT
TTAAATACAAAAAACAATAGCGCCTCGAATGATAAACTTTATCAGGATGT
TGTTGGTAATTTGCTATATACCATGTCCTGCTTAAAACACCCTCATATTG
TTCAATTGTATGCTTTCGATTTTGAAAGTACATCTACATTACTAGTTATG
GAGTTTTGTCCTGGAGGAAACTTGAATAACCGATTACGTGACCCTGTCAA
TATGAAACAAAAGTTTGACTGGATGTCACAATTACTGGAAGCAATGACTT
ACCTCCATAACAATAATTTTGTTCACAGAAACTTCAAACCTGAAAATGTG
CTGCTTGGTAATAGAGGGCAGGCAAAAATGGCTGATTTTGGACTTGCTCG
ACCGTTTTTAACGCGAGATTTGAAAAATAACGAAGATTACCTTTCAGAAT
ACGAAGACATGTTTATGGACAAATATGCAGGTACCATGTATTGGATTGCT
CCTGAAGTCTTTGATCGAAAATATACAGAAAAGGCTGACATTTTCTCGCT
TGGGGTGATATTCTATGCTATTTTGACAAGGAAATATTTAACTTATCAAG
GTGAATCTTATTATTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTT
GGCCTTGGACTTGCTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTT
CGAGGGATTGAAAGAGACAATAGAACAAGATATTGCAAACAATGTAATCA
AAAGTCTGCTTTGTTATGATTACAATAAAAGAATGAGTCTAGACCAAGCA
CACTCTTTCATTTTTGACGCACTCGCTAAAATTGAAAAACAATGCGAGAA
ATCAGTACTTGAAGCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGG
TAGCCGGCTATTTCTTTAGTAAGTATTTTGTGGGCGAGGTTTTCTTAGGA
TACACGACATTTTGACATCTTTAATTACCTTATTTTGGGGTTATTTAGAC
GTTTGTTAAAATTTGAAGATTTTTCCAACCCCTCCCACCATTTATGAGAC
ACCTGAGAGTAAGATGTTTGAGTAAGATGTTTAAACATCTTGAGAACAAG
ATGTGTTGTCTGTTTGGATTAGATATCTGGACGGGTTGGATGTATACTTT
TTTGAGTTGAAAGTGACAGCTATGAGTATTAAGTACAAGGTATTTTGTTT
TAGAAATGGCATCCCATATTTTTCTTGATGATTAAAAAGAAGAACAAGTT
TCTAGATACACTTTTTTTATAAGCTTAACGTTTATAAGCATACGTAGGCT
CACTTTTTGGTACCTAAACAATGGCTCTATTGTTTAAGAACAATCGAATG
CTAATCATAATGCGAGCCTCGTATAGGTGTAGACGCTTGCTTATAAAAAC
AAAGTGTTGGGGTCCCTTTTTGAAACCCCTAAAAAGGGGTTGATGGTATT
TAAGTTTTATTTTAAAATCGTGTTCTATGGAATCTATGGTCGTTTCTTGT
ATTTATTGAAGAGAACATTGTGTACCAATAATTTGAAGTACTTTTACTGT
AGAACAAAAAAGAAGCTAAAGTTTAGCTTGAATGATATATAATGCCCGAT
GTCCGATTTTGAGCTTTGGCCTGGTCAAATAATAAAAGTCTCATTGTATA
CAGGGTGTCTCGAAAAAAAATCATGTGTTAAAACATGACTAAAAGTAGAA
AAAACTCGTGTGTCTATGTCAAAATTAAGTATTTACGTTAGGGTTTCATT
ACACATTTTTTAGTACGTGTATTGATTTTATAGTTTTAAAAAAATGTTTT
ATTACAGAATTGATATTTTGATTATGTTTTTATAAGTTTGCTTCGTTGTA
ACCATTTAAGTATTACTTAAAGGTTTTCTACGGGAATAAAAGGAGCTTAT
TTTAGGCAGTGCCTTTATGTTGAGTCAGATAAATAAAAGCTACTTTTTTA
CGCAACGACATCCTGCAAACAAGTGAAAGATCGAAAGTTGTTTCGAGATG
TGACCTCACATTCTATTGCTTTTGTAAACAAAAAATAGCAAAGTTGATTT
CAAACAAATTTACAATCGAATGTTTTGATTATAAGACGCTCTATTTATTA
TAAACATAAAGCATTCGAAAGAGTATCAGTAAAAGTCCCTTTGTTTGAGA
AATGTTTTTTTATTCAATGTATTTTCATTTTTTCAAAACCTTTTTCTAAT
CTTGTCGCGTTTGTTTTTACTACATCAGCATCGTCAGACCTTTCAATCAA
AACAAAACCTTTAATGTGTTTGTGAGAAACATAAAAACTTTTCTACTTGT
AGTCGTGTTCTAACACAGGACTTTTTTTCGGAACACCCTGTATGATATTT
TCACCCTTTTAAGTTAATATTTCCTTGTTTGTTTTCTTTATTTAGAGCGT
TTTGTACCGGGATTTGCTGCATGTTTCGACGAAGGGAAACATGTTGTTGG
GAATATCGACAATACTGAACAAAAGGATGGAGAAGGAAATGTTCCTCGTG
AACCTTCTGATCGGCCTGGAAGTGAAAATGCGAATCAAAATATTTGTTCT
GTCTCATCTCAGAGTAGGTGGTCATTGTTTTCAATTATGCTCATATGGGC
TAATCTAAAGATCCTCATATCCTACATCTGTGTTGTTATTTCTCCTCATT
TAACATTGAAATTTCACATGACTTGTTCGATTTGTTCACGACACTCGCAG
CCATTCCTTTTTCTTTCAAAAAATCCATTTTCTTACTTTCATTCTCTTCA
AATCTTTCAGTAGATTCAAAAAATGATGTTTTGAAAAACTTCGAACAACA
TTATTCCTGTCCTATTTGTTTGGACATCGTCTGCGAAGCAGTTGAGTGTA
AAGTTTGCCNATCTGGAGAATTTCAATATTCAAAACAAGAGGAGTGCTCA
TAGCCCGAAGAGTAGGAGTTTTACGCTCGAAACGAAGGAAGATATGACGT
AGCCTAACATCTGTGTTGTTATTTCTCCTCATTTAACATTGAAATTTCAC
ATGACTTGTTCGATTTGTTCACGACACTCGCAGCCATTCCTTTTTCTTTC
AAAAAATCCATTTTCTTACTTTCATTCTCTTCAAATCTTTCAGTAGATTC
AAAAAATGATGTTTTGAAAAACTTCGAACAACATTATTCCTGTCCTATTT
GTTTGGACATCGTCTGCGAAGCAGTTGAGTGTAAAGTTTGCCACAAGCTG
TATTGCGATGAGTGTGTCCGAGAATTGAACACGTGTCCGAGCTGCTGCCA
ACCATTTAACACTCAGCCCAACAAAAATGTCCGACAATTTATCGGGAATT
TGAAAACGAAATGCCCAAACGAAGAATGCCGTGAAAAACCAACTCGATCA
AATCTTCAAGAACATTTAAAGAAATGTGAATGGGCGTTGACATTGTGTGA
AAATGAAGGTTGTGAATTAGAATTTCGGAGAATAGATTTGCCGAAACATC
TTTTCGATTGTTCGTATCAGATCGTATTTTGTAGATCGGTCGGCTGTAAA
GAGTCGTTTCCCCGAAAGCGCTTTTTTCTTCATAAAAACGAGTGTTTGTT
CTCTCCTGTCAGATGCTTGGATTGTTTGCAGTTATATCTCAAAAAAGACG
AAACCGTTCATTTTAAGATGTGCAAGCGCAAGAAAATCGAATGTCCTATC
TGTCAGCTTGAAGGAACGAGGTTGGACATTTTACATCATGGTGTAGATAT
ACATTATGATAATGTGGTGACACCCTTCTACCAATCGATGGTGGTTTCTG
CTTCGTCCTCAAGCCATCAACCAATATCGCAAGAAGAGGACAGGTTATTC
GCGGAGTTGGATTGTATTTGAAATTTCGATTAAACTTGTAAATATAATAT
GACGGAGCCAACCCTTAGGATCCTCAGCATCTTTCGTGGACGCAATATAC
CTTTTTGACCGTAGCCGCCAATTGCCGCATGGGCATTTTTTATCCATTTT
ACCACCCTAAAACCGTCCTATTCTTTTTTACGCACCTAAAGACAACAGAA
GAAAGTGTAAAAAAGGATTGGATCGAGTTTAGGGTGGTAAATTAAATAAT
AGAATTGCACGCGCCTGACCGCGCCAAAAAGGTGTATTACATCTTATTGG
TTTGACAGTAGATAGGATTTTGAAACTTTTTAGAGAGGGGCCACGGATCA
GGCCTGACAAAAATTTTAATGGCCGAAAGACTGACGTTACAGACAGAATT
CTTAACCTCTAAAATAAGCGAAAATGACGAATTTTAAAAGGCGAATTCAA
CAGAAATGATTTCTTTTGGACATTTTAAAATATTTTTATCAGCCTCATTT
CGACGAGTGCTTTTCTCCAACTTGTTCAGTAAACCGATTAGGGCACAAGT
TACTTGCGAGAAGAATTTCGAGTGGAAAGAACCAGAAAGAACAATATTGT
TAAAAATGATTACTAGTAATTTAAAATGTCGGGGCTCAAAGGAAATTAAA
GGGAGTTTGAACCTTAATATTGTAGATTAACATTAAATTTAATATATAAT
TTCATTATAATCTTTTAGTATAAATTGATTAATTTTGTAAATGAAATTTC
CGTGAATTAAAAAATATTTTTGTTGAAATTTGTCCATTTTATATTTTTAT
AATTTTCGAAAATTATTTTGTAAGATATATTTTTTTTAATCCACTTTTAA
TATTTTTTTGTTTTTGTCTTGCTTAATTTCTTTTTAGCTCCTTGAACAGA
TGCTAAACCAAATACCAAATGGCTGTGCTATCTACAATAATTGTAGATTC
ACATTAAATGATAATTAAACTATAGGTATAGTATAGATTATAAATTTTTA
GTATAAATTTATTAATTTTGTTATTGAAATTTCCGTGAATTAAGATAGAT
ATTTTTTATTGAAATTTGTCCTTTTTATGAGTTTTTTTCATATTTTTTAA
ATTTTCGAAATTTCTTTTGTAGAATTTTTTTT

Coding sequence (CDS) from alignment at scaffold_339:229296..234427-

>TCONS_00060273 ID=TCONS_00060273|Name=TCONS_00060273|organism=Clytia hemisphaerica|type=CDS|length=5751bp|location=Sequence derived from alignment at scaffold_339:229296..234427- (Clytia hemisphaerica)
TAGATTCAAAAAATGATGTTTTGAAAAACTTCGAACAACATTATTCCTGT
CCTATTTGTTTGGACATCGTCTGCGAAGCAGTTGAGTGTAAAGTTTGCCA
CAAGCTGTATTGCGATGAGTGTGTCCGAGAATTGAACACGTGTCCGAGCT
GCTGCCAACCATTTAACACTCAGCCCAACAAAAATGTCCGACAATTTATC
GGGAATTTGAAAACGAAATGCCCAAACGAAGAATGCCGTGAAAAACCAAC
TCGATCAAATCTTCAAGAACATTTAAAGAAATGTGAATGGGCGTTGACAT
TGTGTGAAAATGAAGGTTGTGAATTAGAATTTCGGAGAATAGATTTGCCG
AAACATCTTTTCGATTGTTCGTATCAGATCGTATTTTGTAGATCGGTCGG
CTGTAAAGAGTCGTTTCCCCGAAAGCGCTTTTTTCTTCATAAAAACGAGT
GTTTGTTCTCTCCTGTCAGATGCTTGGATTGTTTGCAGTTATATCTCAAA
AAAGACGAAACCGTTCATTTTAAGATGTGCAAGCGCAAGAAAATCGAATG
TCCTATCTGTCAGCTTGAAGGAACGAGGTTGGACATTTTACATCATGGTG
TAGATATACATTATGATAATGTGGTGACACCCTTCTACCAATCGATGGTG
GTTTCTGCTTCGTCCTCAAGCCATCAACCAATATCGCAAGAAGAGGACAG
GTTATTCGCGGAGTTGGATTGTATTTGAAGCGTTTTGTACCGGGATTTGC
TGCATGTTTCGACGAAGGGAAACATGTTGTTGGGAATATCGACAATACTG
AACAAAAGGATGGAGAAGGAAATGTTCCTCGTGAACCTTCTGATCGGCCT
GGAAGTGAAAATGCGAATCAAAATATTTGTTCTGTCTCATCTCAGAATGT
CTTTCCAAATCTTGGACTGCAAAAGTGGATGTTTTCAGGAATTGACCATC
GTCAGTAAACTCGACAAGGGTGCATTTGGAGATGTTTACAAAGTGGAGGA
TGCAAGAAAACATGTTTTCGCTTTAAGGAAAATGACCCCTGAACATTATT
TAAATACAAAAAACAATAGCGCCTCGAATGATAAACTTTATCAGGATGTT
GTTGGTAATTTGCTATATACCATGTCCTGCTTAAAACACCCTCATATTGT
TCAATTGTATGCTTTCGATTTTGAAAGTACATCTACATTACTAGTTATGG
AGTTTTGTCCTGGAGGAAACTTGAATAACCGATTACGTGACCCTGTCAAT
ATGAAACAAAAGTTTGACTGGATGTCACAATTACTGGAAGCAATGACTTA
CCTCCATAACAATAATTTTGTTCACAGAAACTTCAAACCTGAAAATGTGC
TGCTTGGTAATAGAGGGCAGGCAAAAATGGCTGATTTTGGACTTGCTCGA
CCGTTTTTAACGCGAGATTTGAAAAATAACGAAGATTACCTTTCAGAATA
CGAAGACATGTTTATGGACAAATATGCAGGTACCATGTATTGGATTGCTC
CTGAAGTCTTTGATCGAAAATATACAGAAAAGGCTGACATTTTCTCGCTT
GGGGTGATATTCTATGCTATTTTGACAAGGAAATATTTAACTTATCAAGG
TGAATCTTATTATTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTTG
GCCTTGGACTTGCTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTTC
GAGGGATTGAAAGAGACAATAGAACAAGATATTGCAAACAATGTAATCAA
AAGTCTGCTTTGTTATGATTACAATAAAAGAATGAGTCTAGACCAAGCAC
ACTCTTTCATTTTTGACGCACTCGCTAAAATTGAAAAACAATGCGAGAAA
TCAGTACTTGAAGCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGGT
AGCCGGCTATTTCTTTATAGATTCAAAAAATGATGTTTTGAAAAACTTCG
AACAACATTATTCCTGTCCTATTTGTTTGGACATCGTCTGCGAAGCAGTT
GAGTGTAAAGTTTGCCACAAGCTGTATTGCGATGAGTGTGTCCGAGAATT
GAACACGTGTCCGAGCTGCTGCCAACCATTTAACACTCAGCCCAACAAAA
ATGTCCGACAATTTATCGGGAATTTGAAAACGAAATGCCCAAACGAAGAA
TGCCGTGAAAAACCAACTCGATCAAATCTTCAAGAACATTTAAAGAAATG
TGAATGGGCGTTGACATTGTGTGAAAATGAAGGTTGTGAATTAGAATTTC
GGAGAATAGATTTGCCGAAACATCTTTTCGATTGTTCGTATCAGATCGTA
TTTTGTAGATCGGTCGGCTGTAAAGAGTCGTTTCCCCGAAAGCGCTTTTT
TCTTCATAAAAACGAGTGTTTGTTCTCTCCTGTCAGATGCTTGGATTGTT
TGCAGTTATATCTCAAAAAAGACGAAACCGTTCATTTTAAGATGTGCAAG
CGCAAGAAAATCGAATGTCCTATCTGTCAGCTTGAAGGAACGAGGTTGGA
CATTTTACATCATGGTGTAGATATACATTATGATAATGTGGTGACACCCT
TCTACCAATCGATGGTGGTTTCTGCTTCGTCCTCAAGCCATCAACCAATA
TCGCAAGAAGAGGACAGGTTATTCGCGGAGTTGGATTGTATTTGAAGCGT
TTTGTACCGGGATTTGCTGCATGTTTCGACGAAGGGAAACATGTTGTTGG
GAATATCGACAATACTGAACAAAAGGATGGAGAAGGAAATGTTCCTCGTG
AACCTTCTGATCGGCCTGGAAGTGAAAATGCGAATCAAAATATTTGTTCT
GTCTCATCTCAGAATGTCTTTCCAAATCTTGGACTGCAAAAGTGGATGTT
TTCAGGAATTGACCATCGTCAGTAAACTCGACAAGGGTGCATTTGGAGAT
GTTTACAAAGTGGAGGATGCAAGAAAACATGTTTTCGCTTTAAGGAAAAT
GACCCCTGAACATTATTTAAATACAAAAAACAATAGCGCCTCGAATGATA
AACTTTATCAGGATGTTGTTGGTAATTTGCTATATACCATGTCCTGCTTA
AAACACCCTCATATTGTTCAATTGTATGCTTTCGATTTTGAAAGTACATC
TACATTACTAGTTATGGAGTTTTGTCCTGGAGGAAACTTGAATAACCGAT
TACGTGACCCTGTCAATATGAAACAAAAGTTTGACTGGATGTCACAATTA
CTGGAAGCAATGACTTACCTCCATAACAATAATTTTGTTCACAGAAACTT
CAAACCTGAAAATGTGCTGCTTGGTAATAGAGGGCAGGCAAAAATGGCTG
ATTTTGGACTTGCTCGACCGTTTTTAACGCGAGATTTGAAAAATAACGAA
GATTACCTTTCAGAATACGAAGACATGTTTATGGACAAATATGCAGGTAC
CATGTATTGGATTGCTCCTGAAGTCTTTGATCGAAAATATACAGAAAAGG
CTGACATTTTCTCGCTTGGGGTGATATTCTATGCTATTTTGACAAGGAAA
TATTTAACTTATCAAGGTGAATCTTATTATTATGGTGCATTTGTGGAGCA
TCATGGGAAAGAAGTTGGCCTTGGACTTGCTATGCATCGTTCTGAGAAAA
ACATTGAACCAAGTTTCGAGGGATTGAAAGAGACAATAGAACAAGATATT
GCAAACAATGTAATCAAAAGTCTGCTTTGTTATGATTACAATAAAAGAAT
GAGTCTAGACCAAGCACACTCTTTCATTTTTGACGCACTCGCTAAAATTG
AAAAACAATGCGAGAAATCAGTACTTGAAGCAACAACGAATCCACCTGCA
AGAAGGAAACCTTCGGTAGCCGGCTATTTCTTTATAGATTCAAAAAATGA
TGTTTTGAAAAACTTCGAACAACATTATTCCTGTCCTATTTGTTTGGACA
TCGTCTGCGAAGCAGTTGAGTGTAAAGTTTGCCACAAGCTGTATTGCGAT
GAGTGTGTCCGAGAATTGAACACGTGTCCGAGCTGCTGCCAACCATTTAA
CACTCAGCCCAACAAAAATGTCCGACAATTTATCGGGAATTTGAAAACGA
AATGCCCAAACGAAGAATGCCGTGAAAAACCAACTCGATCAAATCTTCAA
GAACATTTAAAGAAATGTGAATGGGCGTTGACATTGTGTGAAAATGAAGG
TTGTGAATTAGAATTTCGGAGAATAGATTTGCCGAAACATCTTTTCGATT
GTTCGTATCAGATCGTATTTTGTAGATCGGTCGGCTGTAAAGAGTCGTTT
CCCCGAAAGCGCTTTTTTCTTCATAAAAACGAGTGTTTGTTCTCTCCTGT
CAGATGCTTGGATTGTTTGCAGTTATATCTCAAAAAAGACGAAACCGTTC
ATTTTAAGATGTGCAAGCGCAAGAAAATCGAATGTCCTATCTGTCAGCTT
GAAGGAACGAGGTTGGACATTTTACATCATGGTGTAGATATACATTATGA
TAATGTGGTGACACCCTTCTACCAATCGATGGTGGTTTCTGCTTCGTCCT
CAAGCCATCAACCAATATCGCAAGAAGAGGACAGGTTATTCGCGGAGTTG
GATTGTATTTGAAGCGTTTTGTACCGGGATTTGCTGCATGTTTCGACGAA
GGGAAACATGTTGTTGGGAATATCGACAATACTGAACAAAAGGATGGAGA
AGGAAATGTTCCTCGTGAACCTTCTGATCGGCCTGGAAGTGAAAATGCGA
ATCAAAATATTTGTTCTGTCTCATCTCAGAATGTCTTTCCAAATCTTGGA
CTGCAAAAGTGGATGTTTTCAGGAATTGACCATCGTCAGTAAACTCGACA
AGGGTGCATTTGGAGATGTTTACAAAGTGGAGGATGCAAGAAAACATGTT
TTCGCTTTAAGGAAAATGACCCCTGAACATTATTTAAATACAAAAAACAA
TAGCGCCTCGAATGATAAACTTTATCAGGATGTTGTTGGTAATTTGCTAT
ATACCATGTCCTGCTTAAAACACCCTCATATTGTTCAATTGTATGCTTTC
GATTTTGAAAGTACATCTACATTACTAGTTATGGAGTTTTGTCCTGGAGG
AAACTTGAATAACCGATTACGTGACCCTGTCAATATGAAACAAAAGTTTG
ACTGGATGTCACAATTACTGGAAGCAATGACTTACCTCCATAACAATAAT
TTTGTTCACAGAAACTTCAAACCTGAAAATGTGCTGCTTGGTAATAGAGG
GCAGGCAAAAATGGCTGATTTTGGACTTGCTCGACCGTTTTTAACGCGAG
ATTTGAAAAATAACGAAGATTACCTTTCAGAATACGAAGACATGTTTATG
GACAAATATGCAGGTACCATGTATTGGATTGCTCCTGAAGTCTTTGATCG
AAAATATACAGAAAAGGCTGACATTTTCTCGCTTGGGGTGATATTCTATG
CTATTTTGACAAGGAAATATTTAACTTATCAAGGTGAATCTTATTATTAT
GGTGCATTTGTGGAGCATCATGGGAAAGAAGTTGGCCTTGGACTTGCTAT
GCATCGTTCTGAGAAAAACATTGAACCAAGTTTCGAGGGATTGAAAGAGA
CAATAGAACAAGATATTGCAAACAATGTAATCAAAAGTCTGCTTTGTTAT
GATTACAATAAAAGAATGAGTCTAGACCAAGCACACTCTTTCATTTTTGA
CGCACTCGCTAAAATTGAAAAACAATGCGAGAAATCAGTACTTGAAGCAA
CAACGAATCCACCTGCAAGAAGGAAACCTTCGGTAGCCGGCTATTTCTTT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037912XLOC_037912Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060273-proteinTCONS_00060273-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060273-exon-scaffold_339-1575043694:233310..234427TCONS_00060273-exon-scaffold_339-1575043694:233310..234427Clytia hemisphaericaexon
TCONS_00060273-exon-scaffold_339-1575043694:231665..231832TCONS_00060273-exon-scaffold_339-1575043694:231665..231832Clytia hemisphaericaexon
TCONS_00060273-exon-scaffold_339-1575043694:229296..231134TCONS_00060273-exon-scaffold_339-1575043694:229296..231134Clytia hemisphaericaexon
TCONS_00060273-exon-scaffold_339-1510915933:233310..234427TCONS_00060273-exon-scaffold_339-1510915933:233310..234427Clytia hemisphaericaexon
TCONS_00060273-exon-scaffold_339-1510915933:231665..231832TCONS_00060273-exon-scaffold_339-1510915933:231665..231832Clytia hemisphaericaexon
TCONS_00060273-exon-scaffold_339-1510915933:229296..231134TCONS_00060273-exon-scaffold_339-1510915933:229296..231134Clytia hemisphaericaexon
TCONS_00060273-exon-scaffold_339-1491911889:233310..234427TCONS_00060273-exon-scaffold_339-1491911889:233310..234427Clytia hemisphaericaexon
TCONS_00060273-exon-scaffold_339-1491911889:231665..231832TCONS_00060273-exon-scaffold_339-1491911889:231665..231832Clytia hemisphaericaexon
TCONS_00060273-exon-scaffold_339-1491911889:229296..231134TCONS_00060273-exon-scaffold_339-1491911889:229296..231134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:229296..234427 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78352	1.39028	0.827433	1.03426	2.28482	2.82951	1.0671	1.48564	1.75276	2.02317	2.96273	0.749385	3.72407	2.83225	3.49957	5.13428	3.33363	3.68976	4.34362	4.75792	2.39016	2.94759	2.98416	4.07504	5.3914	3.47766	2.63706	3.02639	3.44665	2.84918
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR000719Prot_kinase_dom
IPR001293Znf_TRAF
IPR001841Znf_RING
IPR011009Kinase-like_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00060273 vs. Swiss-Prot (Human)
Match: STK35 (Serine/threonine-protein kinase 35 OS=Homo sapiens GN=STK35 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.639e-22
Identity = 68/231 (29.44%), Postives = 118/231 (51.08%), Query Frame = 2 
Query:  353 QLYAFDFESTSTLLVMEFCPGGNLN----NRLRDPVNMKQKFDWMSQLLEAMTYLHNNNFVHRNFKPENVLLGNRGQA---KMADFGLAR---PFLTRDLKNNEDYLS-EYEDMFMDKYAGTMYWIAPEVFDRKYTEKADIFSLGVIFYAILTR-KYLTYQGESYYYGAFVEHHGKEVGLGLA--------MHRSEKNIEPSFEGLKETIEQDIANNVIKSLLCYDYNKRM 985
            ++  +  E      VMEFC GG+LN    +R  DP   K    +M QL  A+ +LH N+ VHR+ KP+N+L+  R      K+ADFGL++       R  + N+D  +      ++    G+ +++APEV++  YT KADIF+LG+I +A++ R  ++  + +    G +++   + V +G A        +H  +K      EG+K+ ++  +A N       ++   RM
Sbjct:  300 RILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNK---SFMLQLTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAFELETRM 527
The following BLAST results are available for this feature:
BLAST of TCONS_00060273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STK352.639e-2229.44Serine/threonine-protein kinase 35 OS=Homo sapiens... [more]
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