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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060272 ID=TCONS_00060272|Name=TCONS_00060272|organism=Clytia hemisphaerica|type=transcript|length=3114bp
GAATaagtaataaaaaaacaaatatgaaTTTATGGATGTATTATGAATGA
GTTAAATGGACCTCATAATCAAATTGGAACAATTAAAAAATGTCTTTCCA
AATCTTGGACTGCAAAAGTGGATGTTTTCAGGAATTGACCATCGTCAGTA
AACTCGACAAGGGTGCATTTGGAGATGTTTACAAAGTGGAGGATGCAAGA
AAACATGTTTTCGCTTTAAGGAAAATGACCCCTGAACATTATTTAAATAC
AAAAAACAATAGCGCCTCGAATGATAAACTTTATCAGGATGTTGTTGGTA
ATTTGCTATATACCATGTCCTGCTTAAAACACCCTCATATTGTTCAATTG
TATGCTTTCGATTTTGAAAGTACATCTACATTACTAGTTATGGAGTTTTG
TCCTGGAGGAAACTTGAATAACCGATTACGTGACCCTGTCAATATGAAAC
AAAAGTTTGACTGGATGTCACAATTACTGGAAGCAATGACTTACCTCCAT
AACAATAATTTTGTTCACAGAAACTTCAAACCTGAAAATGTGCTGCTTGG
TAATAGAGGGCAGgcaaaaatggctgattttggACTTGCTCGACCGTTTT
TAACGCGAGATttgaaaaataacgaagatTACCTTTCAGAATACGAAGAC
ATGTTTATGGACAAATATGCAGGTACCATGTATTGGATTGCTCCTGAAGT
CTTTGATCGAAAATATACAGAAAAGGCTGACATTTTCTCGCTTGGGGTGA
TATTCTATGCTATTTTGAcaaggaaatatttaacttaTCAAGGTGAATCT
TATTATTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTTGGCCTTGG
ACTTGCTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTTCGAGGGAT
TGAAAGAGACAATAGAACAAGATATTGCAAACAATGTAATCAAAAGTCTG
CTTTGTTATGATTACAATAAAAGAATGAGTCTAGACCAAGCACACTCTTT
CATTTTTGACGCACtcgctaaaattgaaaaacaatgcGAGAAATCAGTAC
TTGAAGCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGGTAGCCGGC
TATTTCTTTAagCGTTTTGTACCGGGATTTGCTGCATGTTTCGACGAAGG
GAAACATGTTGTTGGGAATATCGACAATACTGAACAAAAGGATGGAGAAG
GAAATGTTCCTCGTGAACCTTCTGATCGGCCTGGAAGTGAAAATGCGAAT
CAAAATATTTGTTCTGTCTCATCTCAGAAttcaaaaaatgatgttttgaa
aaacttcGAACAACATTATTCCTGTCCTATTTGTTTGGACATCGTCTGCG
AAGCAGTTGAGTGTAAAGTTTGCCACAAGCTGTATTGCGATGAGTGTGTC
CGAGAATTGAACACGTGTCCGAGCTGCTGCCAACCATTTAACACTCAGCC
CAACAAAAATGTCCGACAATTTATCGGGAATTTGAAAACGAAATGCCCAA
ACGAAGAATGCCGTGAAAAACCAACTCGATCAAATCTTCAAGAACATTTA
AAGAAATGTGAATGGGCGTTGACATTGTGTGAAAATGAAGGTTGTGAATT
AGAATTTCGGAGAATAGATTTGCCGAAACATCTTTTCGATTGTTCGTATC
AGATCGTATTTTGTAGATCGGTCGGCTGTAAAGAGTCGTTTCCCCGAAAG
CgcttttttcttcataaaaacgAGTGTTTGTTCTCTCCTGTCAGATGCTT
GGATTGTTTGCAGTTATATCTCAAAAAAGACGAAACCGTTCATTTTAAGA
TGTGCAAGCGCAAGAAAATCGAATGTCCTATCTGTCAGCTTGAAGGAACG
AGGTTGGACATTTTACATCATGGTGTAGATATACATTATGATAATGTGGT
GACACCCTTCTACCAATCGATGGTGGTTTCTGCTTCGTCCTCAAGCCATC
AACCAATATCGCAAGAAGAGGACAGGTTATTCGCGGAGTTGGATTGTATT
TGAAATTTCGATTAAACTTGTAAATATAATATGACGGAGCCAACCCTTAG
GATCCTCAGCATCTTTCGTGGACGCAATatacctttttgaccgtagccgc
caattgccgcatgggcattttttatccattttaccaccctaaaaccgtcc
taTTCTTTTTTACGCACCTAAAGACAACAGaagaaagtgtaaaaaaggat
tggatcgagtttagggtggtaaattaaataatagaattgcacgcgcctga
ccgcgccaaaaaggtgtattacatCTTATTGGTTTGACAGTAGATaggat
tttgaaactttttagaGAGGGGCCACGGATCAGGCCTGACAAAAATTTTA
ATGGCCGAAAGACTGACGTTACAGACAGAATTCTTAACCTCTAAAATAAG
CGAAAATGACGAATTTTAAAAGGCGAATTCAACAGAAATGATTTCTTTTG
gacattttaaaatatttttatcagcCTCATTTCGACGAGTGCTTTTCTCC
AACTTGTTCAGTAAACCGATTAGGGCACAAGTTACTTGCGAGAAGAATTT
CGAGTGGAAAGAACCAGAAAGAACAATATTGTTAAAAATGATTACTAGTA
ATTTAAAATGTCGGGGCTCAAAGGAAATTAAAGGGAGTTTGAACCTTAAT
ATTGTAGATTAACATTAAATTTAATATATAATTTCATTATAATCTTTTAG
TATAAATTGATTAATTTTGTAAATGAAATTTCCgtgaattaaaaaatatt
tttgttgaaatttgtccattttatatttttataattttcgaaaattattt
tgtaagatatattttttttaatccacttttaatatttttttgtttttgtc
ttgcttaatttctttttagctCCTTGAACAGATGCTAAACCAAATACCAA
ATGGCTGTGCTATCTACAATAATTGTAGATTCACATTAAATGATAATTAA
ACTATAGGTATAGTATAGATTATAAATTTTTAGTAtaaatttattaattt
tgttattgAAATTTCCGTGAATTAAGAtagatattttttattgaaatttg
tcctttttatgagtttttttcatattttttaaattttcgaaatttctttt
gtagaatttttttt Run BLAST on NCBI transcript from alignment at scaffold_339:229296..234419- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060272 ID=TCONS_00060272|Name=TCONS_00060272|organism=Clytia hemisphaerica|type=transcript|length=5124bp|location=Sequence derived from alignment at scaffold_339:229296..234419- (Clytia hemisphaerica)
GAATAAGTAATAAAAAAACAAATATGAATTTATGGATGTATTATGAATGA
GTTAAATGGACCTCATAATCAAATTGGAACAATTAAAAAATGTCTTTCCA
AATCTTGGACTGCAAAAGTGGATGTTTTCAGGAATTGACCATCGTCAGTA
AACTCGACAAGGGTGCATTTGGAGATGTTTACAAAGTGGAGGATGCAAGA
AAACATGTTTTCGCTTTAAGGAAAATGACCCCTGAACATTATTTAAATAC
AAAAAACAATAGCGCCTCGAATGATAAACTTTATCAGGATGTTGTTGGTA
ATTTGCTATATACCATGTCCTGCTTAAAACACCCTCATATTGTTCAATTG
TATGCTTTCGATTTTGAAAGTACATCTACATTACTAGTTATGGAGTTTTG
TCCTGGAGGAAACTTGAATAACCGATTACGTGACCCTGTCAATATGAAAC
AAAAGTTTGACTGGATGTCACAATTACTGGAAGCAATGACTTACCTCCAT
AACAATAATTTTGTTCACAGAAACTTCAAACCTGAAAATGTGCTGCTTGG
TAATAGAGGGCAGGCAAAAATGGCTGATTTTGGACTTGCTCGACCGTTTT
TAACGCGAGATTTGAAAAATAACGAAGATTACCTTTCAGAATACGAAGAC
ATGTTTATGGACAAATATGCAGGTACCATGTATTGGATTGCTCCTGAAGT
CTTTGATCGAAAATATACAGAAAAGGCTGACATTTTCTCGCTTGGGGTGA
TATTCTATGCTATTTTGACAAGGAAATATTTAACTTATCAAGGTGAATCT
TATTATTATGGTGCATTTGTGGAGCATCATGGGAAAGAAGTTGGCCTTGG
ACTTGCTATGCATCGTTCTGAGAAAAACATTGAACCAAGTTTCGAGGGAT
TGAAAGAGACAATAGAACAAGATATTGCAAACAATGTAATCAAAAGTCTG
CTTTGTTATGATTACAATAAAAGAATGAGTCTAGACCAAGCACACTCTTT
CATTTTTGACGCACTCGCTAAAATTGAAAAACAATGCGAGAAATCAGTAC
TTGAAGCAACAACGAATCCACCTGCAAGAAGGAAACCTTCGGTAGCCGGC
TATTTCTTTAGTAAGTATTTTGTGGGCGAGGTTTTCTTAGGATACACGAC
ATTTTGACATCTTTAATTACCTTATTTTGGGGTTATTTAGACGTTTGTTA
AAATTTGAAGATTTTTCCAACCCCTCCCACCATTTATGAGACACCTGAGA
GTAAGATGTTTGAGTAAGATGTTTAAACATCTTGAGAACAAGATGTGTTG
TCTGTTTGGATTAGATATCTGGACGGGTTGGATGTATACTTTTTTGAGTT
GAAAGTGACAGCTATGAGTATTAAGTACAAGGTATTTTGTTTTAGAAATG
GCATCCCATATTTTTCTTGATGATTAAAAAGAAGAACAAGTTTCTAGATA
CACTTTTTTTATAAGCTTAACGTTTATAAGCATACGTAGGCTCACTTTTT
GGTACCTAAACAATGGCTCTATTGTTTAAGAACAATCGAATGCTAATCAT
AATGCGAGCCTCGTATAGGTGTAGACGCTTGCTTATAAAAACAAAGTGTT
GGGGTCCCTTTTTGAAACCCCTAAAAAGGGGTTGATGGTATTTAAGTTTT
ATTTTAAAATCGTGTTCTATGGAATCTATGGTCGTTTCTTGTATTTATTG
AAGAGAACATTGTGTACCAATAATTTGAAGTACTTTTACTGTAGAACAAA
AAAGAAGCTAAAGTTTAGCTTGAATGATATATAATGCCCGATGTCCGATT
TTGAGCTTTGGCCTGGTCAAATAATAAAAGTCTCATTGTATACAGGGTGT
CTCGAAAAAAAATCATGTGTTAAAACATGACTAAAAGTAGAAAAAACTCG
TGTGTCTATGTCAAAATTAAGTATTTACGTTAGGGTTTCATTACACATTT
TTTAGTACGTGTATTGATTTTATAGTTTTAAAAAAATGTTTTATTACAGA
ATTGATATTTTGATTATGTTTTTATAAGTTTGCTTCGTTGTAACCATTTA
AGTATTACTTAAAGGTTTTCTACGGGAATAAAAGGAGCTTATTTTAGGCA
GTGCCTTTATGTTGAGTCAGATAAATAAAAGCTACTTTTTTACGCAACGA
CATCCTGCAAACAAGTGAAAGATCGAAAGTTGTTTCGAGATGTGACCTCA
CATTCTATTGCTTTTGTAAACAAAAAATAGCAAAGTTGATTTCAAACAAA
TTTACAATCGAATGTTTTGATTATAAGACGCTCTATTTATTATAAACATA
AAGCATTCGAAAGAGTATCAGTAAAAGTCCCTTTGTTTGAGAAATGTTTT
TTTATTCAATGTATTTTCATTTTTTCAAAACCTTTTTCTAATCTTGTCGC
GTTTGTTTTTACTACATCAGCATCGTCAGACCTTTCAATCAAAACAAAAC
CTTTAATGTGTTTGTGAGAAACATAAAAACTTTTCTACTTGTAGTCGTGT
TCTAACACAGGACTTTTTTTCGGAACACCCTGTATGATATTTTCACCCTT
TTAAGTTAATATTTCCTTGTTTGTTTTCTTTATTTAGAGCGTTTTGTACC
GGGATTTGCTGCATGTTTCGACGAAGGGAAACATGTTGTTGGGAATATCG
ACAATACTGAACAAAAGGATGGAGAAGGAAATGTTCCTCGTGAACCTTCT
GATCGGCCTGGAAGTGAAAATGCGAATCAAAATATTTGTTCTGTCTCATC
TCAGAGTAGGTGGTCATTGTTTTCAATTATGCTCATATGGGCTAATCTAA
AGATCCTCATATCCTACATCTGTGTTGTTATTTCTCCTCATTTAACATTG
AAATTTCACATGACTTGTTCGATTTGTTCACGACACTCGCAGCCATTCCT
TTTTCTTTCAAAAAATCCATTTTCTTACTTTCATTCTCTTCAAATCTTTC
AGTAGATTCAAAAAATGATGTTTTGAAAAACTTCGAACAACATTATTCCT
GTCCTATTTGTTTGGACATCGTCTGCGAAGCAGTTGAGTGTAAAGTTTGC
CNATCTGGAGAATTTCAATATTCAAAACAAGAGGAGTGCTCATAGCCCGA
AGAGTAGGAGTTTTACGCTCGAAACGAAGGAAGATATGACGTAGCCTAAC
ATCTGTGTTGTTATTTCTCCTCATTTAACATTGAAATTTCACATGACTTG
TTCGATTTGTTCACGACACTCGCAGCCATTCCTTTTTCTTTCAAAAAATC
CATTTTCTTACTTTCATTCTCTTCAAATCTTTCAGTAGATTCAAAAAATG
ATGTTTTGAAAAACTTCGAACAACATTATTCCTGTCCTATTTGTTTGGAC
ATCGTCTGCGAAGCAGTTGAGTGTAAAGTTTGCCACAAGCTGTATTGCGA
TGAGTGTGTCCGAGAATTGAACACGTGTCCGAGCTGCTGCCAACCATTTA
ACACTCAGCCCAACAAAAATGTCCGACAATTTATCGGGAATTTGAAAACG
AAATGCCCAAACGAAGAATGCCGTGAAAAACCAACTCGATCAAATCTTCA
AGAACATTTAAAGAAATGTGAATGGGCGTTGACATTGTGTGAAAATGAAG
GTTGTGAATTAGAATTTCGGAGAATAGATTTGCCGAAACATCTTTTCGAT
TGTTCGTATCAGATCGTATTTTGTAGATCGGTCGGCTGTAAAGAGTCGTT
TCCCCGAAAGCGCTTTTTTCTTCATAAAAACGAGTGTTTGTTCTCTCCTG
TCAGATGCTTGGATTGTTTGCAGTTATATCTCAAAAAAGACGAAACCGTT
CATTTTAAGATGTGCAAGCGCAAGAAAATCGAATGTCCTATCTGTCAGCT
TGAAGGAACGAGGTTGGACATTTTACATCATGGTGTAGATATACATTATG
ATAATGTGGTGACACCCTTCTACCAATCGATGGTGGTTTCTGCTTCGTCC
TCAAGCCATCAACCAATATCGCAAGAAGAGGACAGGTTATTCGCGGAGTT
GGATTGTATTTGAAATTTCGATTAAACTTGTAAATATAATATGACGGAGC
CAACCCTTAGGATCCTCAGCATCTTTCGTGGACGCAATATACCTTTTTGA
CCGTAGCCGCCAATTGCCGCATGGGCATTTTTTATCCATTTTACCACCCT
AAAACCGTCCTATTCTTTTTTACGCACCTAAAGACAACAGAAGAAAGTGT
AAAAAAGGATTGGATCGAGTTTAGGGTGGTAAATTAAATAATAGAATTGC
ACGCGCCTGACCGCGCCAAAAAGGTGTATTACATCTTATTGGTTTGACAG
TAGATAGGATTTTGAAACTTTTTAGAGAGGGGCCACGGATCAGGCCTGAC
AAAAATTTTAATGGCCGAAAGACTGACGTTACAGACAGAATTCTTAACCT
CTAAAATAAGCGAAAATGACGAATTTTAAAAGGCGAATTCAACAGAAATG
ATTTCTTTTGGACATTTTAAAATATTTTTATCAGCCTCATTTCGACGAGT
GCTTTTCTCCAACTTGTTCAGTAAACCGATTAGGGCACAAGTTACTTGCG
AGAAGAATTTCGAGTGGAAAGAACCAGAAAGAACAATATTGTTAAAAATG
ATTACTAGTAATTTAAAATGTCGGGGCTCAAAGGAAATTAAAGGGAGTTT
GAACCTTAATATTGTAGATTAACATTAAATTTAATATATAATTTCATTAT
AATCTTTTAGTATAAATTGATTAATTTTGTAAATGAAATTTCCGTGAATT
AAAAAATATTTTTGTTGAAATTTGTCCATTTTATATTTTTATAATTTTCG
AAAATTATTTTGTAAGATATATTTTTTTTAATCCACTTTTAATATTTTTT
TGTTTTTGTCTTGCTTAATTTCTTTTTAGCTCCTTGAACAGATGCTAAAC
CAAATACCAAATGGCTGTGCTATCTACAATAATTGTAGATTCACATTAAA
TGATAATTAAACTATAGGTATAGTATAGATTATAAATTTTTAGTATAAAT
TTATTAATTTTGTTATTGAAATTTCCGTGAATTAAGATAGATATTTTTTA
TTGAAATTTGTCCTTTTTATGAGTTTTTTTCATATTTTTTAAATTTTCGA
AATTTCTTTTGTAGAATTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00060272-exon-scaffold_339-1575043694:233310..234419 | TCONS_00060272-exon-scaffold_339-1575043694:233310..234419 | Clytia hemisphaerica | exon |
| TCONS_00060272-exon-scaffold_339-1575043694:231665..231832 | TCONS_00060272-exon-scaffold_339-1575043694:231665..231832 | Clytia hemisphaerica | exon |
| TCONS_00060272-exon-scaffold_339-1575043694:229296..231131 | TCONS_00060272-exon-scaffold_339-1575043694:229296..231131 | Clytia hemisphaerica | exon |
| TCONS_00060272-exon-scaffold_339-1510915933:233310..234419 | TCONS_00060272-exon-scaffold_339-1510915933:233310..234419 | Clytia hemisphaerica | exon |
| TCONS_00060272-exon-scaffold_339-1510915933:231665..231832 | TCONS_00060272-exon-scaffold_339-1510915933:231665..231832 | Clytia hemisphaerica | exon |
| TCONS_00060272-exon-scaffold_339-1510915933:229296..231131 | TCONS_00060272-exon-scaffold_339-1510915933:229296..231131 | Clytia hemisphaerica | exon |
| TCONS_00060272-exon-scaffold_339-1491911889:233310..234419 | TCONS_00060272-exon-scaffold_339-1491911889:233310..234419 | Clytia hemisphaerica | exon |
| TCONS_00060272-exon-scaffold_339-1491911889:231665..231832 | TCONS_00060272-exon-scaffold_339-1491911889:231665..231832 | Clytia hemisphaerica | exon |
| TCONS_00060272-exon-scaffold_339-1491911889:229296..231131 | TCONS_00060272-exon-scaffold_339-1491911889:229296..231131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:229296..234419 - |
Blast
BLAST of TCONS_00060272 vs. Swiss-Prot (Human)
Match: STK35 (Serine/threonine-protein kinase 35 OS=Homo sapiens GN=STK35 PE=1 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.444e-22 Identity = 68/231 (29.44%), Postives = 118/231 (51.08%), Query Frame = 3
Query: 345 QLYAFDFESTSTLLVMEFCPGGNLN----NRLRDPVNMKQKFDWMSQLLEAMTYLHNNNFVHRNFKPENVLLGNRGQA---KMADFGLAR---PFLTRDLKNNEDYLS-EYEDMFMDKYAGTMYWIAPEVFDRKYTEKADIFSLGVIFYAILTR-KYLTYQGESYYYGAFVEHHGKEVGLGLA--------MHRSEKNIEPSFEGLKETIEQDIANNVIKSLLCYDYNKRM 977
++ + E VMEFC GG+LN +R DP K +M QL A+ +LH N+ VHR+ KP+N+L+ R K+ADFGL++ R + N+D + ++ G+ +++APEV++ YT KADIF+LG+I +A++ R ++ + + G +++ + V +G A +H +K EG+K+ ++ +A N ++ RM
Sbjct: 300 RILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNK---SFMLQLTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAFELETRM 527
The following BLAST results are available for this feature:
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