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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060270 ID=TCONS_00060270|Name=TCONS_00060270|organism=Clytia hemisphaerica|type=transcript|length=1420bp
GAAAGGGCGTTTTATCTTATTGTTCTCCATATTTCATTGACCTTATTCGG
AGCGAACCATTGAACTTATTTAAATCTTTCATTGCAATGCAAATAAAGTT
tattgtttgaaagtttcaataaGATTTGAGATTATAAAAACCACGGATTT
AGAGAAATTAGAGTATTGAAGCAACATTGAAGCTAAGAACCAAAACATTG
CGTACAGAAGAGATAAGAATGGTGAAGGGATTTGTTGCTTTCAGAATTTT
GTTGGTTTTCGTTGTAGCAGTGTCGTGTGTGTGCAGCGAAAAACAGGAAT
GTCGAGCTCGTTGTAAGGATGGGCGCGACGGAAGGAACGGGCGGAATGGG
GTCGATGGCGTGGACGGAAGAAACGGAATTGACGGGTTTTGTGGAAAACA
TGGGATCAATGGAACAAACGGAATCGATGGAAAAGATGGACGGAATGGAA
AAGACGGTAAAGATGGTAGGAACGGAAAGGATGGAAAGAATGGAAGAGAT
GGAAGGGATGGAAAAGACATCACtcgaaaaagaaattggaaAGAATGTGC
TTGGGACAATATCAGTGATGGAAGGGATAACGGACTCATTAagACATGCA
GTTTCTCAAAGTCAGAACAATCAACATATCTTTACGTTCAAGTGTCGTCC
AACATGCGAATTGTAAACTGTGATGCATGTTGCAAACGGTGGTTCATTAC
ATTCGACGGAAAAGAATGCACTCCCGTCGCTATCGACGGCGTTGTCTACA
TGTATAAAGGCAAGGGAAGCCGATACAAGAACCTTCATCGACCACGAGTC
ATCGCTGGACATTGTAAAATCAACAAGAGTGGGAGAGTCAATGTCGGTTT
CAACGTCGGCAATTGCCGTAGTTACCCACCGGGAGATGCGCACACTGGGT
GGAATTCCGCCACCAGAATCCACATCTACGAGATGGAACCCCCTCAACAA
TAAACACCTCTGGGTTGAATTCCGCCACTAGAATCCACTCTACGAGATGG
AGCATCCAAAACAATAAACAAcatctttatattttctttcaatgTAGTTT
ATAGCAGTTCCATGATATAactgaaattgtgtttttgttttacaTCTTTC
CCACAACAACATACATATCTGCAACATCTTTTCACCATTAAAATACCAAG
TGTCGCCTTTACTTATAaactttgttttgtttattaaaATTAATCAGTTC
AGAATTTAAATCGTTATTTCTACgtatccaaaaaaaaaagttaaaaactc
gTTTATATCTCCTTTTCATCTCAGTCCATATTTCGTGGAATGCAACGGCA
TGCgattggttcgaaagtagataggattttgagattacttttttgagagg
ggAGCCGCGAACTAGGCCTGGTAAAAGTTTTCATGGCTAAAAGACAGACG
TTACAGGCAAAACTCCTAGC Run BLAST on NCBI protein sequence of TCONS_00060270-protein >TCONS_00060270-protein ID=TCONS_00060270-protein|Name=TCONS_00060270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MVKGFVAFRILLVFVVAVSCVCSEKQECRARCKDGRDGRNGRNGVDGVDG
RNGIDGFCGKHGINGTNGIDGKDGRNGKDGKDGRNGKDGKNGRDGRDGKD
ITRKRNWKECAWDNISDGRDNGLIKTCSFSKSEQSTYLYVQVSSNMRIVN
CDACCKRWFITFDGKECTPVAIDGVVYMYKGKGSRYKNLHRPRVIAGHCK
INKSGRVNVGFNVGNCRSYPPGDAHTGWNSATRIHIYEMEPPQQ Run BLAST on NCBI transcript from alignment at scaffold_339:219995..221911- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060270 ID=TCONS_00060270|Name=TCONS_00060270|organism=Clytia hemisphaerica|type=transcript|length=1917bp|location=Sequence derived from alignment at scaffold_339:219995..221911- (Clytia hemisphaerica)
GAAAGGGCGTTTTATCTTATTGTTCTCCATATTTCATTGACCTTATTCGG
AGCGAACCATTGAACTTATTTAAATCTTTCATTGCAATGCAAATAAAGTT
TATTGTTTGAAAGTTTCAATAAGATTTGAGATTATAAAAACCACGGATTT
AGAGAAATTAGAGTATTGAAGCAACATTGAAGCTAAGAACCAAAACATTG
CGTACAGAAGAGATAAGAATGGTGAAGGGATTTGTTGCTTTCAGAATTTT
GTTGGTTTTCGTTGTAGCAGTGTCGTGTGTGTGCAGCGAAAAACAGGTAA
GTCGACACACTTTATTTGGCATTAACAAATACTAAGTACATGAGGCTGAA
ATTCTTCGCTAAACATGAAGAACTATATAAATGTAAGTGTTTAAATTTTC
TTTGAAAAAACTGGTTTCAAGCTCATTCATTTAACACTTTTCAAAATAAA
TCTTACAGCTTTTGAAATTCATCATGATGCAATTCATCTTTTTTTTCTTT
TTAAAATAGTGAACGAATTTAAAAGTTTTATTAATCGTTTGTAACGCAGG
AATGTCGAGCTCGTTGTAAGGATGGGCGCGACGGAAGGAACGGGCGGAAT
GGGGTCGATGGCGTGGACGGAAGAAACGGAATTGACGGGTTTTGTGGAAA
ACATGGGATCAATGGAACAAACGGAATCGATGGAAAAGATGGACGGAATG
GAAAAGACGGTAAAGATGGTAGGAACGGAAAGGATGGAAAGAATGGAAGA
GATGGAAGGGATGGAAAAGACATCACTCGAAAAAGAAATTGGAAAGAATG
TGCTTGGGACAATATCAGTGATGGAAGGGATAACGGACTCATTAAGGTAA
ATTTCTTTTTTCTTCAATTTTTCATAGTTATATATCATTCTTACACAATT
CTCCTTCTTCTTTGTGCCAAAAGTGCTCGATGATATCTCACAGCTGTTCA
AGTTGTTAAGAATAAGACTTGTAGTTTTTTGGACCTTTAAGTTTCATGAA
GTTGTTCACCGGACAACAAATTTCTGGCGTAAAAAAAGGGATAAGAATGC
GAGAGCAACATTCTGAAAATGATGAAATTCATTTCTTTAGACATGCAGTT
TCTCAAAGTCAGAACAATCAACATATCTTTACGTTCAAGTGTCGTCCAAC
ATGCGAATTGTAAACTGTGATGCATGTTGCAAACGGTGGTTCATTACATT
CGACGGAAAAGAATGCACTCCCGTCGCTATCGACGGCGTTGTCTACATGT
ATAAAGGCAAGGGAAGCCGATACAAGAACCTTCATCGACCACGAGTCATC
GCTGGACATTGTAAAATCAACAAGAGTGGGAGAGTCAATGTCGGTTTCAA
CGTCGGCAATTGCCGTAGTTACCCACCGGGAGATGCGCACACTGGGTGGA
ATTCCGCCACCAGAATCCACATCTACGAGATGGAACCCCCTCAACAATAA
ACACCTCTGGGTTGAATTCCGCCACTAGAATCCACTCTACGAGATGGAGC
ATCCAAAACAATAAACAACATCTTTATATTTTCTTTCAATGTAGTTTATA
GCAGTTCCATGATATAACTGAAATTGTGTTTTTGTTTTACATCTTTCCCA
CAACAACATACATATCTGCAACATCTTTTCACCATTAAAATACCAAGTGT
CGCCTTTACTTATAAACTTTGTTTTGTTTATTAAAATTAATCAGTTCAGA
ATTTAAATCGTTATTTCTACGTATCCAAAAAAAAAAGTTAAAAACTCGTT
TATATCTCCTTTTCATCTCAGTCCATATTTCGTGGAATGCAACGGCATGC
GATTGGTTCGAAAGTAGATAGGATTTTGAGATTACTTTTTTGAGAGGGGA
GCCGCGAACTAGGCCTGGTAAAAGTTTTCATGGCTAAAAGACAGACGTTA
CAGGCAAAACTCCTAGC Coding sequence (CDS) from alignment at scaffold_339:219995..221911- >TCONS_00060270 ID=TCONS_00060270|Name=TCONS_00060270|organism=Clytia hemisphaerica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_339:219995..221911- (Clytia hemisphaerica)
ACATGCAGTTTCTCAAAGTCAGAACAATCAACATATCTTTACGTTCAAGT
GTCGTCCAACATGCGAATTGTAAACTGTGATGCATGTTGCAAACGGTGGT
TCATTACATTCGACGGAAAAGAATGCACTCCCGTCGCTATCGACGGCGTT
GTCTACATGTATAAAGGCAAGGGAAGCCGATACAAGAACCTTCATCGACC
ACGAGTCATCGCTGGACATTGTAAAATCAACAAGAGTGGGAGAGTCAATG
TCGGTTTCAACGTCGGCAATTGCCGTAGTTACCCACCGGGAGATGCGCAC
ACTGGGTGGAATTCCGCCACCAGAATCCACATCTACGAGATGGAACCCCC
TCAACAATAAGAATGTCGAGCTCGTTGTAAGGATGGGCGCGACGGAAGGA
ACGGGCGGAATGGGGTCGATGGCGTGGACGGAAGAAACGGAATTGACGGG
TTTTGTGGAAAACATGGGATCAATGGAACAAACGGAATCGATGGAAAAGA
TGGACGGAATGGAAAAGACGGTAAAGATGGTAGGAACGGAAAGGATGGAA
AGAATGGAAGAGATGGAAGGGATGGAAAAGACATCACTCGAAAAAGAAAT
TGGAAAGAATGTGCTTGGGACAATATCAGTGATGGAAGGGATAACGGACT
CATTAAGATGGTGAAGGGATTTGTTGCTTTCAGAATTTTGTTGGTTTTCG
TTGTAGCAGTGTCGTGTGTGTGCAGCGAAAAACAGACATGCAGTTTCTCA
AAGTCAGAACAATCAACATATCTTTACGTTCAAGTGTCGTCCAACATGCG
AATTGTAAACTGTGATGCATGTTGCAAACGGTGGTTCATTACATTCGACG
GAAAAGAATGCACTCCCGTCGCTATCGACGGCGTTGTCTACATGTATAAA
GGCAAGGGAAGCCGATACAAGAACCTTCATCGACCACGAGTCATCGCTGG
ACATTGTAAAATCAACAAGAGTGGGAGAGTCAATGTCGGTTTCAACGTCG
GCAATTGCCGTAGTTACCCACCGGGAGATGCGCACACTGGGTGGAATTCC
GCCACCAGAATCCACATCTACGAGATGGAACCCCCTCAACAATAAGAATG
TCGAGCTCGTTGTAAGGATGGGCGCGACGGAAGGAACGGGCGGAATGGGG
TCGATGGCGTGGACGGAAGAAACGGAATTGACGGGTTTTGTGGAAAACAT
GGGATCAATGGAACAAACGGAATCGATGGAAAAGATGGACGGAATGGAAA
AGACGGTAAAGATGGTAGGAACGGAAAGGATGGAAAGAATGGAAGAGATG
GAAGGGATGGAAAAGACATCACTCGAAAAAGAAATTGGAAAGAATGTGCT
TGGGACAATATCAGTGATGGAAGGGATAACGGACTCATTAAGATGGTGAA
GGGATTTGTTGCTTTCAGAATTTTGTTGGTTTTCGTTGTAGCAGTGTCGT
GTGTGTGCAGCGAAAAACAGACATGCAGTTTCTCAAAGTCAGAACAATCA
ACATATCTTTACGTTCAAGTGTCGTCCAACATGCGAATTGTAAACTGTGA
TGCATGTTGCAAACGGTGGTTCATTACATTCGACGGAAAAGAATGCACTC
CCGTCGCTATCGACGGCGTTGTCTACATGTATAAAGGCAAGGGAAGCCGA
TACAAGAACCTTCATCGACCACGAGTCATCGCTGGACATTGTAAAATCAA
CAAGAGTGGGAGAGTCAATGTCGGTTTCAACGTCGGCAATTGCCGTAGTT
ACCCACCGGGAGATGCGCACACTGGGTGGAATTCCGCCACCAGAATCCAC
ATCTACGAGATGGAACCCCCTCAACAATAAGAATGTCGAGCTCGTTGTAA
GGATGGGCGCGACGGAAGGAACGGGCGGAATGGGGTCGATGGCGTGGACG
GAAGAAACGGAATTGACGGGTTTTGTGGAAAACATGGGATCAATGGAACA
AACGGAATCGATGGAAAAGATGGACGGAATGGAAAAGACGGTAAAGATGG
TAGGAACGGAAAGGATGGAAAGAATGGAAGAGATGGAAGGGATGGAAAAG
ACATCACTCGAAAAAGAAATTGGAAAGAATGTGCTTGGGACAATATCAGT
GATGGAAGGGATAACGGACTCATTAAGATGGTGAAGGGATTTGTTGCTTT
CAGAATTTTGTTGGTTTTCGTTGTAGCAGTGTCGTGTGTGTGCAGCGAAA
AACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060270-exon-scaffold_339-1575043694:221616..221911 | TCONS_00060270-exon-scaffold_339-1575043694:221616..221911 | Clytia hemisphaerica | exon |
| TCONS_00060270-exon-scaffold_339-1575043694:221066..221362 | TCONS_00060270-exon-scaffold_339-1575043694:221066..221362 | Clytia hemisphaerica | exon |
| TCONS_00060270-exon-scaffold_339-1575043694:219995..220821 | TCONS_00060270-exon-scaffold_339-1575043694:219995..220821 | Clytia hemisphaerica | exon |
| TCONS_00060270-exon-scaffold_339-1510915933:221616..221911 | TCONS_00060270-exon-scaffold_339-1510915933:221616..221911 | Clytia hemisphaerica | exon |
| TCONS_00060270-exon-scaffold_339-1510915933:221066..221362 | TCONS_00060270-exon-scaffold_339-1510915933:221066..221362 | Clytia hemisphaerica | exon |
| TCONS_00060270-exon-scaffold_339-1510915933:219995..220821 | TCONS_00060270-exon-scaffold_339-1510915933:219995..220821 | Clytia hemisphaerica | exon |
| TCONS_00060270-exon-scaffold_339-1491911889:221616..221911 | TCONS_00060270-exon-scaffold_339-1491911889:221616..221911 | Clytia hemisphaerica | exon |
| TCONS_00060270-exon-scaffold_339-1491911889:221066..221362 | TCONS_00060270-exon-scaffold_339-1491911889:221066..221362 | Clytia hemisphaerica | exon |
| TCONS_00060270-exon-scaffold_339-1491911889:219995..220821 | TCONS_00060270-exon-scaffold_339-1491911889:219995..220821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:219995..221911 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008160 | Collagen |
Blast
BLAST of TCONS_00060270 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.396e-27 Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 3
Query: 534 NWKECAWDNISDGRDNGLIKTCSFSKSEQSTYLYVQVSSNMRIVNCDACCKRWFITFDGKECT-PVAIDGVVYMYKGKGSRYK--NLHRPRVIAGHCKINKSGRVNVGFNVGNCRSYPPGDAHTGWNSATRIHIYEM 935
N+K+C+W +++ G D G I C+F+K ++ L V S ++R+ +ACC+RW+ TF+G EC+ P+ I+ ++Y+ +G N+HR + G C+ +G V+V VG C YP GDA TGWNS +RI I E+
Sbjct: 105 NYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
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