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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060259 ID=TCONS_00060259|Name=TCONS_00060259|organism=Clytia hemisphaerica|type=transcript|length=1059bp
GTTACGCTAAGCTATTAGCCGCATTCCGTCATATAATAAAAAACCATCCA
GGCTGTTTGGCTATAATGGAGAGGCTTGAACagataaataaaacaataaa
acaataatTGAGATCTACAACTTCGcgctatattttttgttcgGGAAAGA
CTAACAGGTTGGTTTAGAACTTAGATTTTCGTTCAGACCACAGTGTTCGT
TATTTATAATTCAATCAGCCTATGCCCAGACTAGCTCTCAACAACGTGGT
TGGATTTCTGCGAAACTTCCTTTCAAAATCTTAccgagaaagaagaagga
tgCCTGTATACAATttctgtttaattttttttgtcattcaacCGTGTTGT
GGCAACATCTCTCCTGCTTCCAAGTACCATGAACAATAAggattataatt
tttgaaagTGTCCTGCGCTGGTCTGCTCAATCAACCTTAAAGACATAGGC
AACAGAAGATCAATACTGATACCCAATTTTAGgtGTCAttgcatcatcat
catcatcaggtGGAGTGCAACAATAGTATAAATCAGCGAACTTGCATCTA
TTCAGCTTTCACGGATTTACTTTGAAAACTCAGCTAAACTTGAATCTATT
CAGTTTATACGGATTAACTCGACAAACTCGTTTAATTGTTACACTAATTT
ATTCGGAAAACTCGGCTAGACTTGAATTTACTCGGCTGACATTGATATAC
TCGGCATCTACTCGGGTTACTCGGCTCAGATTTAAATAGCGAATTCAACA
CATCTAGCAGCTTTCTCAGCCAATCCGAATTCCTTGAGTTTGCTAGGTTT
AAAAGAAATAAATACATTGATATTGTTATTTAACTCTCATTTCTTGTACC
TGTTCCCTTCTAAATTTTCCAAAGCATGATTTTTGCGATCCCACCGTGCG
AAATTTGTGCGAGTAAGGATTGAAACTCGGCCTTCAAGGAAGCGAAAACA
AACTAGATATGACAAAGCcctgtttattaatttcgcttagcgaagtatta
cgatagcctttcgcggtggcggcggcggtgtcctcggaaaaaaaattaga
aaacgaaag Run BLAST on NCBI transcript from alignment at scaffold_339:38797..42032- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060259 ID=TCONS_00060259|Name=TCONS_00060259|organism=Clytia hemisphaerica|type=transcript|length=3236bp|location=Sequence derived from alignment at scaffold_339:38797..42032- (Clytia hemisphaerica)
GTTACGCTAAGCTATTAGCCGCATTCCGTCATATAATAAAAAACCATCCA
GGCTGTTTGGCTATAATGGAGAGGCTTGAACAGATAAATAAAACAATAAA
ACAATAATTGAGATCTACAACTTCGCGCTATATTTTTTGTTCGGGAAAGA
CTAACAGGTTGGTTTAGAACTTAGATTTTCGTTCAGACCACAGTGTTCGT
TATTTATAATTCAATCAGCCTATGCCCAGACTAGCTCTCAACAACGTGGT
TGGATTTCTGCGAAACTTCCTTTCAAAATCTTACCGAGAAAGAAGAAGGA
TGCCTGTATACAATTTCTGTTTAATTTTTTTTGTCATTCAACCGTGTTGT
GGCAACATCTCTCCTGCTTCCAAGTACCATGAACAATAAGGATTATAATT
TTTGAAAGGTATGTTGGTTTTTCCTTGCTGTCAAAATAGATAGCACTTAG
ACCTTTTTATTTAAACTTCGTCATCTTTATTTACCCCTGCGGACGACATA
GTTTTCTGTAAAAATCAGGGCCTTGGAATTTCCTTCCAAACCCCTGCGCT
CAATAGGATGAGATGTGAGTTATGGATTACTTATTGATCCGGATGGGAGA
TCGATCAAAGATTGATACTCAAGATTTTATAGGACCGTGCCGAAGCACCG
GACTGTCTGGTGTATTTGTCCGGTGGCAAAAAGTATCCTTTCGCTACACC
GGACGCAATAAGTCCAGTGTCAGTCCGGTGTTGCATACAGGGAATTTTGG
ACGCCGGACATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAT
CTCACCGTACGCACCGGACTGGTCATGTCCAGTGTTTTGATTGTCCGGTG
GGAAAAAATATCCTTCTCCGACACCGGACATCCGACTTCCTTAAATCATT
TTGACTTAAATTCTGTGTCGTCTACCCTGCCCCCCCCCCAATTTACAGAC
TGGAATGGTAGACATTTGCATACGCTTTGGAACAGGGGCGGGGGGAACCC
AAATTTGAACATTTTCAGTGCACAAATACAATGTGGACAGCCCCAATAGT
GGTTTAAATTTTCCTATCTAGGTGGCAAGCTAAAATATGTTCCGTTCACG
TCGCCCAACCGACTCACCTTCAAAACATTAATCCCAAGTCGTACAAGTCG
GCAAAATGTTGGAAAAAGTTTTTGATAGCTAAGCACTTCTTTGAATCATC
ATTCGCTACAAGTTTTTGTTTACTTAACCCACATTGAGTTCGCGTTCGAG
CTTTTTCATGTACCCTTATTGAAATTTTCAAGTCGAAATTCAGCGACGCG
GTAGGGCCAATACCCCCGAGAGCCAAAAATAAGGTCTGCTTTTAAGGTTC
ACACATGGGCGCGCACATTTAATTTGGCAAATTAAAGATGCATTTAATTT
GGCAAATTAAAGATGGCGGCAAGAGATTTTGTTGATTGCCGACTTGATTC
TTCGGGATTTACTAGATTTGAAAAACCCGACAAAATTTACTACTGACCGA
CCGACTGGATTTGAAGATGACGCGAACGGAACATGTTTTAGCTTGCTGCC
TTATTGCGTGGATACAAAATAGGGGATGCATAACATTTTTATCAAAATGT
CTACAGTATTGCTGGTATTTTATTGGTTTGATTGTCGTTTGACTGGCTAG
TTCGAAACGCAGGTCACAATTTTTCTCAAAAGAACGTGGCAATAGAGCAA
CAGTACTCTGAGGCCAGAATTCCCTCTCACCAAACCATTTTCAAAAAGTG
ACCCAGGAGGGGAATGGGTTTGAGTCTGCCCTAAAATTTAATCCCAGATG
CGTCCAAAAAAGCAGTAGCTTAAAACAAGTCAGGAGAAGTTTTAACTTAG
GTGAGAACTGACTTGGGTGTAATCAGTGAAAAATACTGTTATTTTCAGAC
AGATACTAATCTTTTTGTTTTCTTTACAGTGTCCTGCGCTGGTCTGCTCA
ATCAACCTTAAAGACATAGGCAACAGAAGATCAATACTGATACCCAATTT
TAGGTGAGCTCTCTGTCACTTTCTCGGTTTGAAGTGGAAGATAACGCTTG
AGTGATTCTAAATAATCACACTTTTTCCAAAAACATACCTGACCTTTACT
ATGAGCGTACTGAGGCCACTTTTTTCATCTACTCTTCAAGCCCTACCAGT
TGGTCATATTAGATATGAGAATTTCTGACCTCCAAATTTTCGACGGGCCA
AACAGGGCCTGTTTGGCCCATCAACCCTGTGGATTTCTAAATCCTACGTA
TCAGTGAGAATAAAAAACACTAAGAGAATTGTTCTATTGAAAAGTGGTGC
GACAGCGAGTCATCGCCTGGTCTATTTCCTCAAGATTAGTCAGTCATAGT
CCAAACCCCTTCAAAAGAGACTTTAAAGTGCAAAAGAGGGGGGTCTGAGA
GAAAAAGTTTCATAGAAAGGAGATGCAACAAATATCTATGTTATATAATT
AATGAAACTCCTTGGCAGTGATAAAATTAAGTAATTATTCTTTGTAGGGA
GCTCCATCGCATAGAATCACATCAACAGATCAATGTTGCTTTATTTTACC
CTTTTAATTGAAGATCTTGGGATGTATACATTTAATATATTGAATTTTTT
CTGTTTTAGGTGTCATTGCATCATCATCATCATCAGGTGGAGTGCAACAA
TAGTATAAATCAGCGAACTTGCATCTATTCAGCTTTCACGGATTTACTTT
GAAAACTCAGCTAAACTTGAATCTATTCAGTTTATACGGATTAACTCGAC
AAACTCGTTTAATTGTTACACTAATTTATTCGGAAAACTCGGCTAGACTT
GAATTTACTCGGCTGACATTGATATACTCGGCATCTACTCGGGTTACTCG
GCTCAGATTTAAATAGCGAATTCAACACATCTAGCAGCTTTCTCAGCCAA
TCCGAATTCCTTGAGTTTGCTAGGTTTAAAAGAAATAAATACATTGATAT
TGTTATTTAACTCTCATTTCTTGTACCTGTTCCCTTCTAAATTTTCCAAA
GCATGATTTTTGCGATCCCACCGTGCGAAATTTGTGCGAGTAAGGATTGA
AACTCGGCCTTCAAGGAAGCGAAAACAAACTAGATATGACAAAGCCCTGT
TTATTAATTTCGCTTAGCGAAGTATTACGATAGCCTTTCGCGGTGGCGGC
GGCGGTGTCCTCGGAAAAAAAATTAGAAAACGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060259-exon-scaffold_339-1575043694:41625..42032 | TCONS_00060259-exon-scaffold_339-1575043694:41625..42032 | Clytia hemisphaerica | exon |
| TCONS_00060259-exon-scaffold_339-1575043694:39980..40053 | TCONS_00060259-exon-scaffold_339-1575043694:39980..40053 | Clytia hemisphaerica | exon |
| TCONS_00060259-exon-scaffold_339-1575043694:38797..39373 | TCONS_00060259-exon-scaffold_339-1575043694:38797..39373 | Clytia hemisphaerica | exon |
| TCONS_00060259-exon-scaffold_339-1510915933:41625..42032 | TCONS_00060259-exon-scaffold_339-1510915933:41625..42032 | Clytia hemisphaerica | exon |
| TCONS_00060259-exon-scaffold_339-1510915933:39980..40053 | TCONS_00060259-exon-scaffold_339-1510915933:39980..40053 | Clytia hemisphaerica | exon |
| TCONS_00060259-exon-scaffold_339-1510915933:38797..39373 | TCONS_00060259-exon-scaffold_339-1510915933:38797..39373 | Clytia hemisphaerica | exon |
| TCONS_00060259-exon-scaffold_339-1491911889:41625..42032 | TCONS_00060259-exon-scaffold_339-1491911889:41625..42032 | Clytia hemisphaerica | exon |
| TCONS_00060259-exon-scaffold_339-1491911889:39980..40053 | TCONS_00060259-exon-scaffold_339-1491911889:39980..40053 | Clytia hemisphaerica | exon |
| TCONS_00060259-exon-scaffold_339-1491911889:38797..39373 | TCONS_00060259-exon-scaffold_339-1491911889:38797..39373 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:38797..42032 - |
Blast
The following BLAST results are available for this feature:
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