TCONS_00060253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060253
Unique NameTCONS_00060253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060253 ID=TCONS_00060253|Name=TCONS_00060253|organism=Clytia hemisphaerica|type=transcript|length=1284bp
CATTCATACTGAATTATTCACAAACTACAATGCAAATGTGAAACCGGATG
GTTTGATCAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAA
CTCTCCTTCTTGgacATCAGATCGCAAGTTCTGTCGATCCAAACCTTCAC
CACCCTGAGATGGTTTGACAAACGTTTGATGTGGGATCCAAAGGCACACC
ATGACATAACACAAATATCTGTTCCCAATTCATTGCTCTGGACTCCTGAT
ATCGTCTTGTATAATGATGCAGATAACGATTATACAACACATAATGAAAT
TTACCGAACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACCT
CAAATATCGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCCG
CTTGATAAACAGGTTTGCAACTTGTTGTACGGTTCATTGTCATACACATC
AGAGCAATTATCTCTGGTACTTCGAGAGAAAGTCAGGAATATCGATGGTT
TTGTGAAAAGAGGAGATCGAAACTTCGTACAAAGTGGTGAATGGGACGTC
AAAGACATCAACATCAAATCAGTGGAACAGAAATTCCCATGCTGTAGAGA
CAATTTCTCTGCTCTTTCGTATACCGTAGCTTTGTCACGTTTCCCGCAAT
TCTATTTCTTGTATatgtttttcccgattttctcgcaattctttttgttt
ttgatggtttttcacATTAGACCCGAATCAGGTGAACGACTGGGTTTCGG
AATCACTATTCTGCTAAACATCACAATGTTTATGACATTCATATCGGAAA
AGCTTCCCGAGAAATCGAACAACCGACCTCTTATTGGCCTGCTCTTCTCC
GTTCTCTTTTTCATCTATTCACTCGGACTCGCTCTAGCCTCTATGACTAC
ATTCTTCTCGTCCAGGCTAGGACCAGTCCCTCACTGGTTACGCAAGTTTG
CTGCTCCAGCTGCAACTGAAGAGGCTTTTATTGTTGAAAACCAAACCTCA
GAAAACATTGAAGATGAGGAGATTAATACGACAAAAGATGGACCGAAAAT
CCAGACAATTAGTCGGGGATCCAATTCAGAGGTCACGTGGGCGATGGTAA
TGAGATCATTGGACAAATATCTCTTTTACATTTTCTTGGTCATTTCTGTA
TTGTTACCGATTATTATCGGTCTCTCCTTGGATCAGAACTTTTTTGCAgg
atggaaaaatatttttaatgtttgaaaaaaatgaacaacgaattttaata
aaaatcgtGTGAAATATAATTCATGTAACACCCA
Run BLAST on NCBI

transcript from alignment at scaffold_339:270146..274157+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060253 ID=TCONS_00060253|Name=TCONS_00060253|organism=Clytia hemisphaerica|type=transcript|length=4012bp|location=Sequence derived from alignment at scaffold_339:270146..274157+ (Clytia hemisphaerica)
CATTCATACTGAATTATTCACAAACTACAATGCAAATGTGAAACCGGATG
GTTTGATCAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAA
CTCTCCTTCTTGGTAAGTGATCTTATCAACTCACTACTATGTTTGTTTGT
TATAAATATGGGTAGGTTGATAAGGAACACCGTCATGGTGTCGGAAGGAA
AAGAGCGGACTGGAAACAAGGCATTCTTCCTAAATACAAGTCGGTATTGT
CTGTATATTCATCATATTATTTTGACACGATCCTGATTAAAGGAAATCTG
TTAATGCTTATCACAAGTcgattcttttcattttcaggacATCAGATCGC
AAGTTCTGTCGATCCAAACCTTCACCACCCTGGTAAGAAATTGtggtttt
tattcaaaaatgaaTTGAAGTCGTTTTTATATTCGTGGAAACgttctttt
ttcataaaattccgTGATTCTGTAAACTGGTATTGATTTCTTATCCCAGA
AAAATTTGGATCTTCCCATTTCAACCTTCTCGTCTTTTCTGACTGATAGA
GATGGTTTGACAAACGTTTGATGTGGGATCCAAAGGCACACCATGACATA
ACACAAATATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTT
GTATAATGAGTAAGTAGTATAAAGCCCCTGTCGTTGTGGCTTTNaatatt
tcttttcatctttctaATGATAACATTTCCAGCAAAGATTTCCTTCAAAA
GATGACTATCGGGAGCAGAGAAGGGGAACCTTTTTACAAATACCGTTTAT
TTCAAATCTTTCATCTTAGTTTAAAAGTCATAagaagacatttttcaaaa
tgataatttGAATCACTCAGATAAACGTTATTCTTGCTTCTTCCATACTT
CCTCCATGTTTACGATAATTCCTCTAACCTCACAGCTCTTTTTTAACTGG
AAAAGTATGAAGCTTCAAGCTTTATGTTGGTCATTCTTGTTGTCATGGTT
GCAATTTGCAGTCGGTAAGTATAACGGTTATCTTTCTTCCCCTAAACATG
AACCACAAAAAACGTACGTACAACTTTTCTGGTAAGTAGTCAATAATCAA
TGCAACAAAGAGTTACATAAGTTTTTCACCGGACTTTGAAATATCGTTAT
AtcgtttttgaaatttccaaaatatatCAATATCTAGGTAGTTCCACAGA
ATTATTATTCCTCAGTTCATGAAAACTTACTTCTTGCTTCTTAGGGTTGA
AGATGTCCAACACTCCAAGGGAAGAGAGCATTCATACTGAACTGTTCACA
AACTACAATGCAAATGTGAAACCGGATGGTTTAATCAACAATACTGTTCA
AGTACATTTGGATGTCACCGTCCTCAAACTCTCCTTCTTGGTAAGTGATC
TTATCAACCCACTACTATGTTTGATGGTTATAAATATGGGTAGGTTGATA
AGGAACACCGTCATGGTGTCGGAAGGAAAAGAGCCATGGCGACTGGAAAC
AAGTCTTCCTTTCTAAATACAAGTTGAATACAAGTCCTGCATTGTCTGTA
TGTTCATCATATTATTTTGACACGATCCTGATTAAAGGAAATCTGTTAAT
GCTTATCACAAGTcgattcttttcattttcaggacATCAGATCGCAAGTT
CTGTCGATCCAAACCTTCACCACCCTGGTAAGAAATTGtggtttttattc
aaaaatgaaTTGAAGTCGTTTTTATATTCGTGGAAACgttcttttttcat
aaaattccgTGATTCTGTAAACTGGTATTGATTTCTTATCCCAGAAAAAT
TTGGATCTTCCCATTTCAACCTTCTCGTCTTTTCTGACTGATAGAGATGG
TTTGACAAACGTTTGATGTGGGATCCAAAGGCACACCATGACATAACACA
AATATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTTGTATA
ATGAGTAAGTAGTATAAAGCCCCTGTCGTTGTGGCTTTATGCGTTAACTT
GGGGAGTTACTGGAAAAATCGGCCAACATGTCATCTCTGGAGGGAGTGTA
TTCTGATGGTCGCTGTGAGAAAGCTACAAAAAAAAGCATTGTTTGTGACA
GGGGTGTATCTGTTAAATAGCTCCTTTCTCAAGAAGCGAATCGTGGTGCA
gcggtagagcatccggctacggttatATCAAAGaatctcaaaatggtact
taatgcatctctgcttgatgctcaacaattaagagaaggatcaagggtaa
atggagaaatccagggagaaagagtagCGCTcttccctaccttcgggtaa
aGCTATCGAatgaggagccttcgggtcgcctcctaCTGTGGTTACAGACT
TACTTACCTCTCAGGGGGTTACAGGGCATCCCCTTCGTCATTTCATCCCA
AACAAAGTAGCAGgtattcatttcatttcattttccaTCAAAATAAGGCT
ACAACTTTCTTTTACAGTGCAGATAACGATTATACAACACATAATGAAAT
TTACCGAACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACCT
CAAATATCGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCCG
CTTGATAAACAGGTAAGAACACCCTTATCACTGCAATATAATGATGGtgt
atttttgatgactccATTGATTCTACTGGTTTTCTTGCAGAAGAATGTAC
TTATACTATGAATGTacaaaacaaatgaacaaagattttgtttatttcCA
GGTTTGCAACTTGTTGTACGGTTCATTGTCATACACATCAGAGCAATTAT
CTCTGGTACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTGTGAAAAGA
GGAGGTTAGTGCAGATAATAATTTCCAACCAGCTTTTTAAAAAACACAGT
CTATGTTAAAGtgctttttagaattttagaaTGTCTTGCGTAATACTTTA
CAGTGTAGTTTCAGTTTTGGATCTTACGTAATTCAATCTCTAATATCTTT
TTGTTGAttacatcaggcagaaatctATATTTTATACAtggcaaatataa
aaaaattcactatggtcagagcccttaacttgaacctctataactcgaaa
aaagTTTCATGGTCCCTTTGTTATGCCTTTTAAACTATGAACTATAATTC
GAAATTAtaataactcgaacaaatttgtgttcccccgtgcgtgttcgagt
tatggagacttcacTGTATAACAAACCCTGATCTATCTTTCAGATCGAAA
CTTCGTACAAAGTGGTGAATGGGACGTCAAAGACATCAACATCAAATCAG
TGGAACAGAAATTCCCATGCTGTAGAGACAATTTCTCTGCTCTTTCGTAT
ACCGTAGCTTTGTCACGTTTCCCGCAATTCTATTTCTTGTATatgttttt
cccgattttctcgcaattctttttgtttttgatggtttttcacATTAGAC
CCGAATCAGGTGAACGACTGGGTTTCGGAATCACTATTCTGCTAAACATC
ACAATGTTTATGACATTCATATCGGAAAAGCTTCCCGAGAAATCGAACAA
CCGACCTCTTATTGGCCTGCTCTTCTCCGTTCTCTTTTTCATCTATTCAC
TCGGACTCGCTCTAGCCTCTATGACTACATTCTTCTCGTCCAGGCTAGGA
CCAGTCCCTCACTGGTTACGCAAGTTTGCTGCTCCAGCTGCAACTGAAGA
GGCTTTTATTGTTGAAAACCAAACCTCAGAAAACATTGAAGATGAGGAGA
TTAATACGACAAAAGATGGACCGAAAATCCAGACAATTAGTCGGGGATCC
AATTCAGAGGTCACGTGGGCGATGGTAATGAGATCATTGGACAAATATCT
CTTTTACATTTTCTTGGTCATTTCTGTATTGTTACCGATTATTATCGGTC
TCTCCTTGGATCAGAACTTTTTTGCAggatggaaaaatatttttaatgtt
tgaaaaaaatgaacaacgaattttaataaaaatcgtGTGAAATATAATTC
ATGTAACACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037898XLOC_037898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060253-exon-scaffold_339-1491911889:270146..270222TCONS_00060253-exon-scaffold_339-1491911889:270146..270222Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1510915933:270146..270222TCONS_00060253-exon-scaffold_339-1510915933:270146..270222Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1575043694:270146..270222TCONS_00060253-exon-scaffold_339-1575043694:270146..270222Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1491911889:271501..271535TCONS_00060253-exon-scaffold_339-1491911889:271501..271535Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1510915933:271501..271535TCONS_00060253-exon-scaffold_339-1510915933:271501..271535Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1575043694:271501..271535TCONS_00060253-exon-scaffold_339-1575043694:271501..271535Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1491911889:271778..271822TCONS_00060253-exon-scaffold_339-1491911889:271778..271822Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1510915933:271778..271822TCONS_00060253-exon-scaffold_339-1510915933:271778..271822Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1575043694:271778..271822TCONS_00060253-exon-scaffold_339-1575043694:271778..271822Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1491911889:271990..272099TCONS_00060253-exon-scaffold_339-1491911889:271990..272099Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1510915933:271990..272099TCONS_00060253-exon-scaffold_339-1510915933:271990..272099Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1575043694:271990..272099TCONS_00060253-exon-scaffold_339-1575043694:271990..272099Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1491911889:272613..272757TCONS_00060253-exon-scaffold_339-1491911889:272613..272757Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1510915933:272613..272757TCONS_00060253-exon-scaffold_339-1510915933:272613..272757Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1575043694:272613..272757TCONS_00060253-exon-scaffold_339-1575043694:272613..272757Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1491911889:272897..272999TCONS_00060253-exon-scaffold_339-1491911889:272897..272999Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1510915933:272897..272999TCONS_00060253-exon-scaffold_339-1510915933:272897..272999Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1575043694:272897..272999TCONS_00060253-exon-scaffold_339-1575043694:272897..272999Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1491911889:273389..274157TCONS_00060253-exon-scaffold_339-1491911889:273389..274157Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1510915933:273389..274157TCONS_00060253-exon-scaffold_339-1510915933:273389..274157Clytia hemisphaericaexon
TCONS_00060253-exon-scaffold_339-1575043694:273389..274157TCONS_00060253-exon-scaffold_339-1575043694:273389..274157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:270146..274157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0330026	0	0	0	0	0.0351691	9.78371e-08	0	0.117021	0.0416059	0	0	2.48046	1.25809	0.341213	0.305841	0.354479	0	3.867	0.162696	0.602289	0.7119	1.8283	0.783368	1.15734	0	0	0.475914	1.01919	0.0220637
Blast
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BLAST of TCONS_00060253 vs. Swiss-Prot (Human)
Match: ACHA9 (Neuronal acetylcholine receptor subunit alpha-9 OS=Homo sapiens GN=CHRNA9 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.043e-46
Identity = 98/315 (31.11%), Postives = 165/315 (52.38%), Query Frame = 2 
Query:   11 ELFTNYNANVKPDGLINNTVQVHLDVTVLKLSFLDIRSQVLSIQTFTTLRWFDKRLMWDPKAHHDITQISVPNSLLWTPDIVLYNDADNDYTTHNEIYRTNVQIHHKGMLTWTSNIEWKANCEVDITWFPLDKQVCNLLYGSLSYTSEQLSLVLREKVRNIDGFVKRGD-RNFVQSGEWDVKDINIKSVEQKFPCCRDNFSALSYTVALSRFPQFYFLYMXXXXXXXXXXXLMVFHIRPESGERLGFGITILLNITMFMTFISEKLPEKSNNRPLIGLLFSVLFFIYSLGLALASMTT---FFSSRLGPVPHWLR 943
            +LF +Y+  ++P    +  + V L +T+ ++  +D R+Q+L+   +    W D  L WD   +  +  I +P+ L+W PDIVLYN AD++    +E   TNV + + G++TW +    K++C VD+T+FP D Q CNL +GS +Y   Q+         +I   +  GD  +F++  EW+V  +        + CC + +  +++T+ L R   FY + +  P     FL  + F++   SGE++  G+TILL +T+F   ++E +P  S N PLIG  +     + +   AL  M     F  +   PVPHW R
Sbjct:   37 DLFEDYSNALRPVEDTDKVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDE---SSEPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQV---------DIFNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMP-ASENVPLIGKYYIATMALITASTALTIMVMNIHFCGAEARPVPHWAR 338
The following BLAST results are available for this feature:
BLAST of TCONS_00060253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA94.043e-4631.11Neuronal acetylcholine receptor subunit alpha-9 OS... [more]
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