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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060249 ID=TCONS_00060249|Name=TCONS_00060249|organism=Clytia hemisphaerica|type=transcript|length=1379bp CTAGGTAGTTCCACAGGATTATTATTCCTCAGCTCATGAAAACTTACTTC TTGCTTCTTAGGGTTGAAGATATCCAACACTCCAAAAGAAGAGAGCATTC ATACTGAATTATTCACAAACTACAATGCAAATGTGAAACCGGATGGTTTG ATCAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAACTCTC CTTCTTGgacATCAGATCGCAAGTTCTGTCGATCCAAACCTTCACCACCC TGAGATGGTTTGACAAACGTTTGATGTGGGATCCAAAGGCACACCATGAC ATAACACAAATATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGT CTTGTATAATGATGCAGATAACGATTATACAACACATAATGAAATTTACC GAACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACCTCAAAT ATCGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCCGCTTGA TAAACAGGTTTGCAACTTGTTGTACGGTTCATTGTCATACACATCAGAGC AATTATCTCTGGTACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTGTG AAAAGAGGAGATCGAAACTTCGTACAAAGTGGTGAATGGGACGTCAAAGA CATCAACATCAAATCAGTGGAACAGAAATTCCCATGCTGTAGAGACAATT TCTCTGCTCTTTCGTATACCGTAGCTTTGTCACGTTTCCCGCAATTCTAT TTCTTGTATatgtttttcccgattttctcgcaattctttttgtttttgat ggtttttcacATTAGACCCGAATCAGGTGAACGACTGGGTTTCGGAATCA CTATTCTGCTAAACATCACAATGTTTATGACATTCATATCGGAAAAGCTT CCCGAGAAATCGAACAACCGACCTCTTATTGGCCTGCTCTTCTCCGTTCT CTTTTTCATCTATTCACTCGGACTCGCTCTAGCCTCTATGACTACATTCT TCTCGTCCAGGCTAGGACCAGTCCCTCACTGGTTACGCAAGTTTGCTGCT CCAGCTGCAACTGAAGAGGCTTTTATTGTTGAAAACCAAACCTCAGAAAA CATTGAAGATGAGGAGATTAATACGACAAAAGATGGACCGAAAATCCAGA CAATTAGTCGGGGATCCAATTCAGAGGTCACGTGGGCGATGGTAATGAGA TCATTGGACAAATATCTCTTTTACATTTTCTTGGTCATTTCTGTATTGTT ACCGATTATTATCGGTCTCTCCTTGGATCAGAACTTTTTTGCAggatgga aaaatatttttaatgtttgaaaaaaatgaacaacgaattttaataaaaat cgtGTGAAATATAATTCATGTAACACCCA Run BLAST on NCBI transcript from alignment at scaffold_339:270051..274157+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060249 ID=TCONS_00060249|Name=TCONS_00060249|organism=Clytia hemisphaerica|type=transcript|length=4107bp|location=Sequence derived from alignment at scaffold_339:270051..274157+ (Clytia hemisphaerica) CTAGGTAGTTCCACAGGATTATTATTCCTCAGCTCATGAAAACTTACTTC
TTGCTTCTTAGGGTTGAAGATATCCAACACTCCAAAAGAAGAGAGCATTC
ATACTGAATTATTCACAAACTACAATGCAAATGTGAAACCGGATGGTTTG
ATCAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAACTCTC
CTTCTTGGTAAGTGATCTTATCAACTCACTACTATGTTTGTTTGTTATAA
ATATGGGTAGGTTGATAAGGAACACCGTCATGGTGTCGGAAGGAAAAGAG
CGGACTGGAAACAAGGCATTCTTCCTAAATACAAGTCGGTATTGTCTGTA
TATTCATCATATTATTTTGACACGATCCTGATTAAAGGAAATCTGTTAAT
GCTTATCACAAGTcgattcttttcattttcaggacATCAGATCGCAAGTT
CTGTCGATCCAAACCTTCACCACCCTGGTAAGAAATTGtggtttttattc
aaaaatgaaTTGAAGTCGTTTTTATATTCGTGGAAACgttcttttttcat
aaaattccgTGATTCTGTAAACTGGTATTGATTTCTTATCCCAGAAAAAT
TTGGATCTTCCCATTTCAACCTTCTCGTCTTTTCTGACTGATAGAGATGG
TTTGACAAACGTTTGATGTGGGATCCAAAGGCACACCATGACATAACACA
AATATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTTGTATA
ATGAGTAAGTAGTATAAAGCCCCTGTCGTTGTGGCTTTNaatatttcttt
tcatctttctaATGATAACATTTCCAGCAAAGATTTCCTTCAAAAGATGA
CTATCGGGAGCAGAGAAGGGGAACCTTTTTACAAATACCGTTTATTTCAA
ATCTTTCATCTTAGTTTAAAAGTCATAagaagacatttttcaaaatgata
atttGAATCACTCAGATAAACGTTATTCTTGCTTCTTCCATACTTCCTCC
ATGTTTACGATAATTCCTCTAACCTCACAGCTCTTTTTTAACTGGAAAAG
TATGAAGCTTCAAGCTTTATGTTGGTCATTCTTGTTGTCATGGTTGCAAT
TTGCAGTCGGTAAGTATAACGGTTATCTTTCTTCCCCTAAACATGAACCA
CAAAAAACGTACGTACAACTTTTCTGGTAAGTAGTCAATAATCAATGCAA
CAAAGAGTTACATAAGTTTTTCACCGGACTTTGAAATATCGTTATAtcgt
ttttgaaatttccaaaatatatCAATATCTAGGTAGTTCCACAGAATTAT
TATTCCTCAGTTCATGAAAACTTACTTCTTGCTTCTTAGGGTTGAAGATG
TCCAACACTCCAAGGGAAGAGAGCATTCATACTGAACTGTTCACAAACTA
CAATGCAAATGTGAAACCGGATGGTTTAATCAACAATACTGTTCAAGTAC
ATTTGGATGTCACCGTCCTCAAACTCTCCTTCTTGGTAAGTGATCTTATC
AACCCACTACTATGTTTGATGGTTATAAATATGGGTAGGTTGATAAGGAA
CACCGTCATGGTGTCGGAAGGAAAAGAGCCATGGCGACTGGAAACAAGTC
TTCCTTTCTAAATACAAGTTGAATACAAGTCCTGCATTGTCTGTATGTTC
ATCATATTATTTTGACACGATCCTGATTAAAGGAAATCTGTTAATGCTTA
TCACAAGTcgattcttttcattttcaggacATCAGATCGCAAGTTCTGTC
GATCCAAACCTTCACCACCCTGGTAAGAAATTGtggtttttattcaaaaa
tgaaTTGAAGTCGTTTTTATATTCGTGGAAACgttcttttttcataaaat
tccgTGATTCTGTAAACTGGTATTGATTTCTTATCCCAGAAAAATTTGGA
TCTTCCCATTTCAACCTTCTCGTCTTTTCTGACTGATAGAGATGGTTTGA
CAAACGTTTGATGTGGGATCCAAAGGCACACCATGACATAACACAAATAT
CTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTTGTATAATGAG
TAAGTAGTATAAAGCCCCTGTCGTTGTGGCTTTATGCGTTAACTTGGGGA
GTTACTGGAAAAATCGGCCAACATGTCATCTCTGGAGGGAGTGTATTCTG
ATGGTCGCTGTGAGAAAGCTACAAAAAAAAGCATTGTTTGTGACAGGGGT
GTATCTGTTAAATAGCTCCTTTCTCAAGAAGCGAATCGTGGTGCAgcggt
agagcatccggctacggttatATCAAAGaatctcaaaatggtacttaatg
catctctgcttgatgctcaacaattaagagaaggatcaagggtaaatgga
gaaatccagggagaaagagtagCGCTcttccctaccttcgggtaaaGCTA
TCGAatgaggagccttcgggtcgcctcctaCTGTGGTTACAGACTTACTT
ACCTCTCAGGGGGTTACAGGGCATCCCCTTCGTCATTTCATCCCAAACAA
AGTAGCAGgtattcatttcatttcattttccaTCAAAATAAGGCTACAAC
TTTCTTTTACAGTGCAGATAACGATTATACAACACATAATGAAATTTACC
GAACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACCTCAAAT
ATCGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCCGCTTGA
TAAACAGGTAAGAACACCCTTATCACTGCAATATAATGATGGtgtatttt
tgatgactccATTGATTCTACTGGTTTTCTTGCAGAAGAATGTACTTATA
CTATGAATGTacaaaacaaatgaacaaagattttgtttatttcCAGGTTT
GCAACTTGTTGTACGGTTCATTGTCATACACATCAGAGCAATTATCTCTG
GTACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTGTGAAAAGAGGAGG
TTAGTGCAGATAATAATTTCCAACCAGCTTTTTAAAAAACACAGTCTATG
TTAAAGtgctttttagaattttagaaTGTCTTGCGTAATACTTTACAGTG
TAGTTTCAGTTTTGGATCTTACGTAATTCAATCTCTAATATCTTTTTGTT
GAttacatcaggcagaaatctATATTTTATACAtggcaaatataaaaaaa
ttcactatggtcagagcccttaacttgaacctctataactcgaaaaaagT
TTCATGGTCCCTTTGTTATGCCTTTTAAACTATGAACTATAATTCGAAAT
TAtaataactcgaacaaatttgtgttcccccgtgcgtgttcgagttatgg
agacttcacTGTATAACAAACCCTGATCTATCTTTCAGATCGAAACTTCG
TACAAAGTGGTGAATGGGACGTCAAAGACATCAACATCAAATCAGTGGAA
CAGAAATTCCCATGCTGTAGAGACAATTTCTCTGCTCTTTCGTATACCGT
AGCTTTGTCACGTTTCCCGCAATTCTATTTCTTGTATatgtttttcccga
ttttctcgcaattctttttgtttttgatggtttttcacATTAGACCCGAA
TCAGGTGAACGACTGGGTTTCGGAATCACTATTCTGCTAAACATCACAAT
GTTTATGACATTCATATCGGAAAAGCTTCCCGAGAAATCGAACAACCGAC
CTCTTATTGGCCTGCTCTTCTCCGTTCTCTTTTTCATCTATTCACTCGGA
CTCGCTCTAGCCTCTATGACTACATTCTTCTCGTCCAGGCTAGGACCAGT
CCCTCACTGGTTACGCAAGTTTGCTGCTCCAGCTGCAACTGAAGAGGCTT
TTATTGTTGAAAACCAAACCTCAGAAAACATTGAAGATGAGGAGATTAAT
ACGACAAAAGATGGACCGAAAATCCAGACAATTAGTCGGGGATCCAATTC
AGAGGTCACGTGGGCGATGGTAATGAGATCATTGGACAAATATCTCTTTT
ACATTTTCTTGGTCATTTCTGTATTGTTACCGATTATTATCGGTCTCTCC
TTGGATCAGAACTTTTTTGCAggatggaaaaatatttttaatgtttgaaa
aaaatgaacaacgaattttaataaaaatcgtGTGAAATATAATTCATGTA
ACACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060249-exon-scaffold_339-1491911889:270051..270257 | TCONS_00060249-exon-scaffold_339-1491911889:270051..270257 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1510915933:270051..270257 | TCONS_00060249-exon-scaffold_339-1510915933:270051..270257 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1575043694:270051..270257 | TCONS_00060249-exon-scaffold_339-1575043694:270051..270257 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1491911889:270483..270527 | TCONS_00060249-exon-scaffold_339-1491911889:270483..270527 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1510915933:270483..270527 | TCONS_00060249-exon-scaffold_339-1510915933:270483..270527 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1575043694:270483..270527 | TCONS_00060249-exon-scaffold_339-1575043694:270483..270527 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1491911889:270695..270804 | TCONS_00060249-exon-scaffold_339-1491911889:270695..270804 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1510915933:270695..270804 | TCONS_00060249-exon-scaffold_339-1510915933:270695..270804 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1575043694:270695..270804 | TCONS_00060249-exon-scaffold_339-1575043694:270695..270804 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1491911889:272613..272757 | TCONS_00060249-exon-scaffold_339-1491911889:272613..272757 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1510915933:272613..272757 | TCONS_00060249-exon-scaffold_339-1510915933:272613..272757 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1575043694:272613..272757 | TCONS_00060249-exon-scaffold_339-1575043694:272613..272757 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1491911889:272897..272999 | TCONS_00060249-exon-scaffold_339-1491911889:272897..272999 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1510915933:272897..272999 | TCONS_00060249-exon-scaffold_339-1510915933:272897..272999 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1575043694:272897..272999 | TCONS_00060249-exon-scaffold_339-1575043694:272897..272999 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1491911889:273389..274157 | TCONS_00060249-exon-scaffold_339-1491911889:273389..274157 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1510915933:273389..274157 | TCONS_00060249-exon-scaffold_339-1510915933:273389..274157 | Clytia hemisphaerica | exon |
TCONS_00060249-exon-scaffold_339-1575043694:273389..274157 | TCONS_00060249-exon-scaffold_339-1575043694:273389..274157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_339 | supercontig | scaffold_339:270051..274157 + |
Blast
BLAST of TCONS_00060249 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.980e-46 Identity = 95/320 (29.69%), Postives = 179/320 (55.94%), Query Frame = 1
Query: 88 EESIHTELFTNYNANVKPDGLINNTVQVHLDVTVLKLSFLDIRSQVLSIQTFTTLRWFDKRLMWDPKAHHDITQISVPNSLLWTPDIVLYNDADNDYTTHNEIYRTNVQIHHKGMLTWTSNIEWKANCEVDITWFPLDKQVCNLLYGSLSYTSEQLSLVLREKVRNIDGFVKRGDRNFVQSGEWDVKDINIKSVEQKFPCCRDNFSALSYTVALSRFPQFYFLYMXXXXXXXXXXXLMVFHIRPESGERLGFGITILLNITMFMTFISEKLPEKSNNRPLIG--LLFSVLFFIYSLGLALASMTTFF-SSRLGPVPHWLR 1038
EE + +LF++YN ++P +++ V VH +V + +L+ +D +Q++ + W D +L WDP + I + VP +W PDIVLYN+A D+ +T + + GM+TWT +K++C +DIT+FP D Q C+L +GS +Y ++ L++ I V D F ++ EW++ D + + K+ CC + ++ ++Y+ + R P FY + + P FL ++VF++ + GE++ I++LL++T+F+ I+E +P S PL+G LLF+++F S+ + + + + + +P W++
Sbjct: 34 EERLFHKLFSHYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNAVGDFQVEG---KTKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLI------IGSKVDMND--FWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVK 342
The following BLAST results are available for this feature:
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