TCONS_00060248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060248
Unique NameTCONS_00060248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060248 ID=TCONS_00060248|Name=TCONS_00060248|organism=Clytia hemisphaerica|type=transcript|length=1669bp
CATGCATTCCATCTTAAGTTCGTATCTCAAAGatatttcttttcatcttt
ctaATGATAACATTTCCAGCGAAGATTTCCTTCAAAAGATGACTATCGGG
AGCAGAGAAGGGGAACCTTTTTACAAATACCGTTTATTTCAAATCTTTCA
TCTTAGTTTAAAAGTCATAAggagacatttttcaaaatgataatttGAAT
CACTCAGATAAACGTTATTCTTGCTTCTTCCATACTTCCTCCATGTTTAC
GATAATTCCTCTAACCTCACAGCTCTTTTTTAACTGGAAAAGTATGAAGC
TTCAAGCTTTATGTTGGTCATTCTTGTTGTCATGGTTGCAATTTGCAGTT
GGGTTGAAGATGTCCAACACTCCAAGGGAAGAGAGCATTCATACTGAACT
GTTCACAAACTACAATGCAAATGTGAAACCGGATGGTTTAATCAACAATA
CTGTTCAAGTACATTTGGATGTCACCGTCCTCAAACTCTCCTTCTTGgac
ATCAGATCGCAAGTTCTGTCGATCCAAACCTTCACCACCCTGAGATGGTT
TGACAAACGTTTGATGTGGGATCCAAAGGCACACCATGACATAACACAAA
TATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTTGTATAAT
GATGCAGATAACGATTATACAACACATAATGAAATTTACCGAACGAACGT
TCAAATCCATCATAAAGGTATGTTGACATGGACCTCAAATATCGAGTGGA
AAGCCAATTGCGAAGTAGACATCACCTGGTTCCCGCTTGATAAACAGGTT
TGCAACTTGTTGTACGGTTCATTGTCATACACATCAGAGCAATTATCTCT
GGTACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTGTGAAAAGAGGAG
ATCGAAACTTCGTACAAAGTGGTGAATGGGACGTCAAAGACATCAACATC
AAATCAGTGGAACAGAAATTCCCATGCTGTAGAGACAATTTCTCTGCTCT
TTCGTATACCGTAGCTTTGTCACGTTTCCCGCAATTCTATTTCTTGTATa
tgtttttcccgattttctcgcaattctttttgtttttgatggtttttcac
ATTAGACCCGAATCAGGTGAACGACTGGGTTTCGGAATCACTATTCTGCT
AAACATCACAATGTTTATGACATTCATATCGGAAAAGCTTCCCGAGAAAT
CGAACAACCGACCTCTTATTGGCCTGCTCTTCTCCGTTCTCTTTTTCATC
TATTCACTCGGACTCGCTCTAGCCTCTATGACTACATTCTTCTCGTCCAG
GCTAGGACCAGTCCCTCACTGGTTACGCAAGTTTGCTGCTCCAGCTGCAA
CTGAAGAGGCTTTTATTGTTGAAAACCAAACCTCAGAAAACATTGAAGAT
GAGGAGATTAATACGACAAAAGATGGACCGAAAATCCAGACAATTAGTCG
GGGATCCAATTCAGAGGTCACGTGGGCGATGGTAATGAGATCATTGGACA
AATATCTCTTTTACATTTTCTTGGTCATTTCTGTATTGTTACCGATTATT
ATCGGTCTCTCCTTGGATCAGAACTTTTTTGCAggatggaaaaatatttt
taatgtttgaaaaaaatgaacaacgaattttaataaaaatcgtGTGAAAT
ATAATTCATGTAACACCCA
Run BLAST on NCBI

protein sequence of TCONS_00060248-protein

>TCONS_00060248-protein ID=TCONS_00060248-protein|Name=TCONS_00060248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MFTIIPLTSQLFFNWKSMKLQALCWSFLLSWLQFAVGLKMSNTPREESIH
TELFTNYNANVKPDGLINNTVQVHLDVTVLKLSFLDIRSQVLSIQTFTTL
RWFDKRLMWDPKAHHDITQISVPNSLLWTPDIVLYNDADNDYTTHNEIYR
TNVQIHHKGMLTWTSNIEWKANCEVDITWFPLDKQVCNLLYGSLSYTSEQ
LSLVLREKVRNIDGFVKRGDRNFVQSGEWDVKDINIKSVEQKFPCCRDNF
SALSYTVALSRFPQFYFLYMFFPIFSQFFLFLMVFHIRPESGERLGFGIT
ILLNITMFMTFISEKLPEKSNNRPLIGLLFSVLFFIYSLGLALASMTTFF
SSRLGPVPHWLRKFAAPAATEEAFIVENQTSENIEDEEINTTKDGPKIQT
ISRGSNSEVTWAMVMRSLDKYLFYIFLVISVLLPIIIGLSLDQNFFAGWK
NIFNV
Run BLAST on NCBI

transcript from alignment at scaffold_339:269531..274157+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060248 ID=TCONS_00060248|Name=TCONS_00060248|organism=Clytia hemisphaerica|type=transcript|length=4627bp|location=Sequence derived from alignment at scaffold_339:269531..274157+ (Clytia hemisphaerica)
CATGCATTCCATCTTAAGTTCGTATCTCAAAGatatttcttttcatcttt
ctaATGATAACATTTCCAGCGAAGATTTCCTTCAAAAGATGACTATCGGG
AGCAGAGAAGGGGAACCTTTTTACAAATACCGTTTATTTCAAATCTTTCA
TCTTAGTTTAAAAGTCATAAggagacatttttcaaaatgataatttGAAT
CACTCAGATAAACGTTATTCTTGCTTCTTCCATACTTCCTCCATGTTTAC
GATAATTCCTCTAACCTCACAGCTCTTTTTTAACTGGAAAAGTATGAAGC
TTCAAGCTTTATGTTGGTCATTCTTGTTGTCATGGTTGCAATTTGCAGTT
GGTAAGTATAACGGTTATCTTTCTTCCCCTAAACATGAACCACAAAAAAC
GTACGTACAACTTTTCTGGTAAGTAGTCAATAATCAATGCAACAAAAAGT
TACATAAGTTTTTCACCGGACTTTGAAATATCGTTATAtcgtttttgaaa
tttccaaaatatatCAATATCTAGGTAGTTCCACAGGATTATTATTCCTC
AGCTCATGAAAACTTACTTCTTGCTTCTTAGGGTTGAAGATATCCAACAC
TCCAAAAGAAGAGAGCATTCATACTGAATTATTCACAAACTACAATGCAA
ATGTGAAACCGGATGGTTTGATCAACAATACTGTTCAAGTACATTTGGAT
GTCACCGTCCTCAAACTCTCCTTCTTGGTAAGTGATCTTATCAACTCACT
ACTATGTTTGTTTGTTATAAATATGGGTAGGTTGATAAGGAACACCGTCA
TGGTGTCGGAAGGAAAAGAGCGGACTGGAAACAAGGCATTCTTCCTAAAT
ACAAGTCGGTATTGTCTGTATATTCATCATATTATTTTGACACGATCCTG
ATTAAAGGAAATCTGTTAATGCTTATCACAAGTcgattcttttcattttc
aggacATCAGATCGCAAGTTCTGTCGATCCAAACCTTCACCACCCTGGTA
AGAAATTGtggtttttattcaaaaatgaaTTGAAGTCGTTTTTATATTCG
TGGAAACgttcttttttcataaaattccgTGATTCTGTAAACTGGTATTG
ATTTCTTATCCCAGAAAAATTTGGATCTTCCCATTTCAACCTTCTCGTCT
TTTCTGACTGATAGAGATGGTTTGACAAACGTTTGATGTGGGATCCAAAG
GCACACCATGACATAACACAAATATCTGTTCCCAATTCATTGCTCTGGAC
TCCTGATATCGTCTTGTATAATGAGTAAGTAGTATAAAGCCCCTGTCGTT
GTGGCTTTNaatatttcttttcatctttctaATGATAACATTTCCAGCAA
AGATTTCCTTCAAAAGATGACTATCGGGAGCAGAGAAGGGGAACCTTTTT
ACAAATACCGTTTATTTCAAATCTTTCATCTTAGTTTAAAAGTCATAaga
agacatttttcaaaatgataatttGAATCACTCAGATAAACGTTATTCTT
GCTTCTTCCATACTTCCTCCATGTTTACGATAATTCCTCTAACCTCACAG
CTCTTTTTTAACTGGAAAAGTATGAAGCTTCAAGCTTTATGTTGGTCATT
CTTGTTGTCATGGTTGCAATTTGCAGTCGGTAAGTATAACGGTTATCTTT
CTTCCCCTAAACATGAACCACAAAAAACGTACGTACAACTTTTCTGGTAA
GTAGTCAATAATCAATGCAACAAAGAGTTACATAAGTTTTTCACCGGACT
TTGAAATATCGTTATAtcgtttttgaaatttccaaaatatatCAATATCT
AGGTAGTTCCACAGAATTATTATTCCTCAGTTCATGAAAACTTACTTCTT
GCTTCTTAGGGTTGAAGATGTCCAACACTCCAAGGGAAGAGAGCATTCAT
ACTGAACTGTTCACAAACTACAATGCAAATGTGAAACCGGATGGTTTAAT
CAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAACTCTCCT
TCTTGGTAAGTGATCTTATCAACCCACTACTATGTTTGATGGTTATAAAT
ATGGGTAGGTTGATAAGGAACACCGTCATGGTGTCGGAAGGAAAAGAGCC
ATGGCGACTGGAAACAAGTCTTCCTTTCTAAATACAAGTTGAATACAAGT
CCTGCATTGTCTGTATGTTCATCATATTATTTTGACACGATCCTGATTAA
AGGAAATCTGTTAATGCTTATCACAAGTcgattcttttcattttcaggac
ATCAGATCGCAAGTTCTGTCGATCCAAACCTTCACCACCCTGGTAAGAAA
TTGtggtttttattcaaaaatgaaTTGAAGTCGTTTTTATATTCGTGGAA
ACgttcttttttcataaaattccgTGATTCTGTAAACTGGTATTGATTTC
TTATCCCAGAAAAATTTGGATCTTCCCATTTCAACCTTCTCGTCTTTTCT
GACTGATAGAGATGGTTTGACAAACGTTTGATGTGGGATCCAAAGGCACA
CCATGACATAACACAAATATCTGTTCCCAATTCATTGCTCTGGACTCCTG
ATATCGTCTTGTATAATGAGTAAGTAGTATAAAGCCCCTGTCGTTGTGGC
TTTATGCGTTAACTTGGGGAGTTACTGGAAAAATCGGCCAACATGTCATC
TCTGGAGGGAGTGTATTCTGATGGTCGCTGTGAGAAAGCTACAAAAAAAA
GCATTGTTTGTGACAGGGGTGTATCTGTTAAATAGCTCCTTTCTCAAGAA
GCGAATCGTGGTGCAgcggtagagcatccggctacggttatATCAAAGaa
tctcaaaatggtacttaatgcatctctgcttgatgctcaacaattaagag
aaggatcaagggtaaatggagaaatccagggagaaagagtagCGCTcttc
cctaccttcgggtaaaGCTATCGAatgaggagccttcgggtcgcctccta
CTGTGGTTACAGACTTACTTACCTCTCAGGGGGTTACAGGGCATCCCCTT
CGTCATTTCATCCCAAACAAAGTAGCAGgtattcatttcatttcattttc
caTCAAAATAAGGCTACAACTTTCTTTTACAGTGCAGATAACGATTATAC
AACACATAATGAAATTTACCGAACGAACGTTCAAATCCATCATAAAGGTA
TGTTGACATGGACCTCAAATATCGAGTGGAAAGCCAATTGCGAAGTAGAC
ATCACCTGGTTCCCGCTTGATAAACAGGTAAGAACACCCTTATCACTGCA
ATATAATGATGGtgtatttttgatgactccATTGATTCTACTGGTTTTCT
TGCAGAAGAATGTACTTATACTATGAATGTacaaaacaaatgaacaaaga
ttttgtttatttcCAGGTTTGCAACTTGTTGTACGGTTCATTGTCATACA
CATCAGAGCAATTATCTCTGGTACTTCGAGAGAAAGTCAGGAATATCGAT
GGTTTTGTGAAAAGAGGAGGTTAGTGCAGATAATAATTTCCAACCAGCTT
TTTAAAAAACACAGTCTATGTTAAAGtgctttttagaattttagaaTGTC
TTGCGTAATACTTTACAGTGTAGTTTCAGTTTTGGATCTTACGTAATTCA
ATCTCTAATATCTTTTTGTTGAttacatcaggcagaaatctATATTTTAT
ACAtggcaaatataaaaaaattcactatggtcagagcccttaacttgaac
ctctataactcgaaaaaagTTTCATGGTCCCTTTGTTATGCCTTTTAAAC
TATGAACTATAATTCGAAATTAtaataactcgaacaaatttgtgttcccc
cgtgcgtgttcgagttatggagacttcacTGTATAACAAACCCTGATCTA
TCTTTCAGATCGAAACTTCGTACAAAGTGGTGAATGGGACGTCAAAGACA
TCAACATCAAATCAGTGGAACAGAAATTCCCATGCTGTAGAGACAATTTC
TCTGCTCTTTCGTATACCGTAGCTTTGTCACGTTTCCCGCAATTCTATTT
CTTGTATatgtttttcccgattttctcgcaattctttttgtttttgatgg
tttttcacATTAGACCCGAATCAGGTGAACGACTGGGTTTCGGAATCACT
ATTCTGCTAAACATCACAATGTTTATGACATTCATATCGGAAAAGCTTCC
CGAGAAATCGAACAACCGACCTCTTATTGGCCTGCTCTTCTCCGTTCTCT
TTTTCATCTATTCACTCGGACTCGCTCTAGCCTCTATGACTACATTCTTC
TCGTCCAGGCTAGGACCAGTCCCTCACTGGTTACGCAAGTTTGCTGCTCC
AGCTGCAACTGAAGAGGCTTTTATTGTTGAAAACCAAACCTCAGAAAACA
TTGAAGATGAGGAGATTAATACGACAAAAGATGGACCGAAAATCCAGACA
ATTAGTCGGGGATCCAATTCAGAGGTCACGTGGGCGATGGTAATGAGATC
ATTGGACAAATATCTCTTTTACATTTTCTTGGTCATTTCTGTATTGTTAC
CGATTATTATCGGTCTCTCCTTGGATCAGAACTTTTTTGCAggatggaaa
aatatttttaatgtttgaaaaaaatgaacaacgaattttaataaaaatcg
tGTGAAATATAATTCATGTAACACCCA

Coding sequence (CDS) from alignment at scaffold_339:269531..274157+

>TCONS_00060248 ID=TCONS_00060248|Name=TCONS_00060248|organism=Clytia hemisphaerica|type=CDS|length=9576bp|location=Sequence derived from alignment at scaffold_339:269531..274157+ (Clytia hemisphaerica)
ATGTTTACGATAATTCCTCTAACCTCACAGCTCTTTTTTAACTGGAAAAG
TATGAAGCTTCAAGCTTTATGTTGGTCATTCTTGTTGTCATGGTTGCAAT
TTGCAGTTGGGTTGAAGATGTCCAACACTCCAAGGGAAGAGAGCATTCAT
ACTGAACTGTTCACAAACTACAATGCAAATGTGAAACCGGATGGTTTAAT
CAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAACTCTCCT
TCTTGgacATCAGATCGCAAGTTCTGTCGATCCAAACCTTCACCACCCTG
AGATGGTTTGACAAACGTTTGATGTGGGATCCAAAGGCACACCATGACAT
AACACAAATATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCT
TGTATAATGATGCAGATAACGATTATACAACACATAATGAAATTTACCGA
ACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACCTCAAATAT
CGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCCGCTTGATA
AACAGGTTTGCAACTTGTTGTACGGTTCATTGTCATACACATCAGAGCAA
TTATCTCTGGTACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTGTGAA
AAGAGGAGATCGAAACTTCGTACAAAGTGGTGAATGGGACGTCAAAGACA
TCAACATCAAATCAGTGGAACAGAAATTCCCATGCTGTAGAGACAATTTC
TCTGCTCTTTCGTATACCGTAGCTTTGTCACGTTTCCCGCAATTCTATTT
CTTGTATatgtttttcccgattttctcgcaattctttttgtttttgatgg
tttttcacATTAGACCCGAATCAGGTGAACGACTGGGTTTCGGAATCACT
ATTCTGCTAAACATCACAATGTTTATGACATTCATATCGGAAAAGCTTCC
CGAGAAATCGAACAACCGACCTCTTATTGGCCTGCTCTTCTCCGTTCTCT
TTTTCATCTATTCACTCGGACTCGCTCTAGCCTCTATGACTACATTCTTC
TCGTCCAGGCTAGGACCAGTCCCTCACTGGTTACGCAAGTTTGCTGCTCC
AGCTGCAACTGAAGAGGCTTTTATTGTTGAAAACCAAACCTCAGAAAACA
TTGAAGATGAGGAGATTAATACGACAAAAGATGGACCGAAAATCCAGACA
ATTAGTCGGGGATCCAATTCAGAGGTCACGTGGGCGATGGTAATGAGATC
ATTGGACAAATATCTCTTTTACATTTTCTTGGTCATTTCTGTATTGTTAC
CGATTATTATCGGTCTCTCCTTGGATCAGAACTTTTTTGCAggatggaaa
aatatttttaatgtttgaATGTTTACGATAATTCCTCTAACCTCACAGCT
CTTTTTTAACTGGAAAAGTATGAAGCTTCAAGCTTTATGTTGGTCATTCT
TGTTGTCATGGTTGCAATTTGCAGTTGGGTTGAAGATGTCCAACACTCCA
AGGGAAGAGAGCATTCATACTGAACTGTTCACAAACTACAATGCAAATGT
GAAACCGGATGGTTTAATCAACAATACTGTTCAAGTACATTTGGATGTCA
CCGTCCTCAAACTCTCCTTCTTGgacATCAGATCGCAAGTTCTGTCGATC
CAAACCTTCACCACCCTGAGATGGTTTGACAAACGTTTGATGTGGGATCC
AAAGGCACACCATGACATAACACAAATATCTGTTCCCAATTCATTGCTCT
GGACTCCTGATATCGTCTTGTATAATGATGCAGATAACGATTATACAACA
CATAATGAAATTTACCGAACGAACGTTCAAATCCATCATAAAGGTATGTT
GACATGGACCTCAAATATCGAGTGGAAAGCCAATTGCGAAGTAGACATCA
CCTGGTTCCCGCTTGATAAACAGGTTTGCAACTTGTTGTACGGTTCATTG
TCATACACATCAGAGCAATTATCTCTGGTACTTCGAGAGAAAGTCAGGAA
TATCGATGGTTTTGTGAAAAGAGGAGATCGAAACTTCGTACAAAGTGGTG
AATGGGACGTCAAAGACATCAACATCAAATCAGTGGAACAGAAATTCCCA
TGCTGTAGAGACAATTTCTCTGCTCTTTCGTATACCGTAGCTTTGTCACG
TTTCCCGCAATTCTATTTCTTGTATatgtttttcccgattttctcgcaat
tctttttgtttttgatggtttttcacATTAGACCCGAATCAGGTGAACGA
CTGGGTTTCGGAATCACTATTCTGCTAAACATCACAATGTTTATGACATT
CATATCGGAAAAGCTTCCCGAGAAATCGAACAACCGACCTCTTATTGGCC
TGCTCTTCTCCGTTCTCTTTTTCATCTATTCACTCGGACTCGCTCTAGCC
TCTATGACTACATTCTTCTCGTCCAGGCTAGGACCAGTCCCTCACTGGTT
ACGCAAGTTTGCTGCTCCAGCTGCAACTGAAGAGGCTTTTATTGTTGAAA
ACCAAACCTCAGAAAACATTGAAGATGAGGAGATTAATACGACAAAAGAT
GGACCGAAAATCCAGACAATTAGTCGGGGATCCAATTCAGAGGTCACGTG
GGCGATGGTAATGAGATCATTGGACAAATATCTCTTTTACATTTTCTTGG
TCATTTCTGTATTGTTACCGATTATTATCGGTCTCTCCTTGGATCAGAAC
TTTTTTGCAggatggaaaaatatttttaatgtttgaATGTTTACGATAAT
TCCTCTAACCTCACAGCTCTTTTTTAACTGGAAAAGTATGAAGCTTCAAG
CTTTATGTTGGTCATTCTTGTTGTCATGGTTGCAATTTGCAGTTGGGTTG
AAGATGTCCAACACTCCAAGGGAAGAGAGCATTCATACTGAACTGTTCAC
AAACTACAATGCAAATGTGAAACCGGATGGTTTAATCAACAATACTGTTC
AAGTACATTTGGATGTCACCGTCCTCAAACTCTCCTTCTTGgacATCAGA
TCGCAAGTTCTGTCGATCCAAACCTTCACCACCCTGAGATGGTTTGACAA
ACGTTTGATGTGGGATCCAAAGGCACACCATGACATAACACAAATATCTG
TTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTTGTATAATGATGCA
GATAACGATTATACAACACATAATGAAATTTACCGAACGAACGTTCAAAT
CCATCATAAAGGTATGTTGACATGGACCTCAAATATCGAGTGGAAAGCCA
ATTGCGAAGTAGACATCACCTGGTTCCCGCTTGATAAACAGGTTTGCAAC
TTGTTGTACGGTTCATTGTCATACACATCAGAGCAATTATCTCTGGTACT
TCGAGAGAAAGTCAGGAATATCGATGGTTTTGTGAAAAGAGGAGATCGAA
ACTTCGTACAAAGTGGTGAATGGGACGTCAAAGACATCAACATCAAATCA
GTGGAACAGAAATTCCCATGCTGTAGAGACAATTTCTCTGCTCTTTCGTA
TACCGTAGCTTTGTCACGTTTCCCGCAATTCTATTTCTTGTATatgtttt
tcccgattttctcgcaattctttttgtttttgatggtttttcacATTAGA
CCCGAATCAGGTGAACGACTGGGTTTCGGAATCACTATTCTGCTAAACAT
CACAATGTTTATGACATTCATATCGGAAAAGCTTCCCGAGAAATCGAACA
ACCGACCTCTTATTGGCCTGCTCTTCTCCGTTCTCTTTTTCATCTATTCA
CTCGGACTCGCTCTAGCCTCTATGACTACATTCTTCTCGTCCAGGCTAGG
ACCAGTCCCTCACTGGTTACGCAAGTTTGCTGCTCCAGCTGCAACTGAAG
AGGCTTTTATTGTTGAAAACCAAACCTCAGAAAACATTGAAGATGAGGAG
ATTAATACGACAAAAGATGGACCGAAAATCCAGACAATTAGTCGGGGATC
CAATTCAGAGGTCACGTGGGCGATGGTAATGAGATCATTGGACAAATATC
TCTTTTACATTTTCTTGGTCATTTCTGTATTGTTACCGATTATTATCGGT
CTCTCCTTGGATCAGAACTTTTTTGCAggatggaaaaatatttttaatgt
ttgaATGTTTACGATAATTCCTCTAACCTCACAGCTCTTTTTTAACTGGA
AAAGTATGAAGCTTCAAGCTTTATGTTGGTCATTCTTGTTGTCATGGTTG
CAATTTGCAGTTGGGTTGAAGATGTCCAACACTCCAAGGGAAGAGAGCAT
TCATACTGAACTGTTCACAAACTACAATGCAAATGTGAAACCGGATGGTT
TAATCAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAACTC
TCCTTCTTGgacATCAGATCGCAAGTTCTGTCGATCCAAACCTTCACCAC
CCTGAGATGGTTTGACAAACGTTTGATGTGGGATCCAAAGGCACACCATG
ACATAACACAAATATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATC
GTCTTGTATAATGATGCAGATAACGATTATACAACACATAATGAAATTTA
CCGAACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACCTCAA
ATATCGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCCGCTT
GATAAACAGGTTTGCAACTTGTTGTACGGTTCATTGTCATACACATCAGA
GCAATTATCTCTGGTACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTG
TGAAAAGAGGAGATCGAAACTTCGTACAAAGTGGTGAATGGGACGTCAAA
GACATCAACATCAAATCAGTGGAACAGAAATTCCCATGCTGTAGAGACAA
TTTCTCTGCTCTTTCGTATACCGTAGCTTTGTCACGTTTCCCGCAATTCT
ATTTCTTGTATatgtttttcccgattttctcgcaattctttttgtttttg
atggtttttcacATTAGACCCGAATCAGGTGAACGACTGGGTTTCGGAAT
CACTATTCTGCTAAACATCACAATGTTTATGACATTCATATCGGAAAAGC
TTCCCGAGAAATCGAACAACCGACCTCTTATTGGCCTGCTCTTCTCCGTT
CTCTTTTTCATCTATTCACTCGGACTCGCTCTAGCCTCTATGACTACATT
CTTCTCGTCCAGGCTAGGACCAGTCCCTCACTGGTTACGCAAGTTTGCTG
CTCCAGCTGCAACTGAAGAGGCTTTTATTGTTGAAAACCAAACCTCAGAA
AACATTGAAGATGAGGAGATTAATACGACAAAAGATGGACCGAAAATCCA
GACAATTAGTCGGGGATCCAATTCAGAGGTCACGTGGGCGATGGTAATGA
GATCATTGGACAAATATCTCTTTTACATTTTCTTGGTCATTTCTGTATTG
TTACCGATTATTATCGGTCTCTCCTTGGATCAGAACTTTTTTGCAggatg
gaaaaatatttttaatgtttgaATGTTTACGATAATTCCTCTAACCTCAC
AGCTCTTTTTTAACTGGAAAAGTATGAAGCTTCAAGCTTTATGTTGGTCA
TTCTTGTTGTCATGGTTGCAATTTGCAGTTGGGTTGAAGATGTCCAACAC
TCCAAGGGAAGAGAGCATTCATACTGAACTGTTCACAAACTACAATGCAA
ATGTGAAACCGGATGGTTTAATCAACAATACTGTTCAAGTACATTTGGAT
GTCACCGTCCTCAAACTCTCCTTCTTGgacATCAGATCGCAAGTTCTGTC
GATCCAAACCTTCACCACCCTGAGATGGTTTGACAAACGTTTGATGTGGG
ATCCAAAGGCACACCATGACATAACACAAATATCTGTTCCCAATTCATTG
CTCTGGACTCCTGATATCGTCTTGTATAATGATGCAGATAACGATTATAC
AACACATAATGAAATTTACCGAACGAACGTTCAAATCCATCATAAAGGTA
TGTTGACATGGACCTCAAATATCGAGTGGAAAGCCAATTGCGAAGTAGAC
ATCACCTGGTTCCCGCTTGATAAACAGGTTTGCAACTTGTTGTACGGTTC
ATTGTCATACACATCAGAGCAATTATCTCTGGTACTTCGAGAGAAAGTCA
GGAATATCGATGGTTTTGTGAAAAGAGGAGATCGAAACTTCGTACAAAGT
GGTGAATGGGACGTCAAAGACATCAACATCAAATCAGTGGAACAGAAATT
CCCATGCTGTAGAGACAATTTCTCTGCTCTTTCGTATACCGTAGCTTTGT
CACGTTTCCCGCAATTCTATTTCTTGTATatgtttttcccgattttctcg
caattctttttgtttttgatggtttttcacATTAGACCCGAATCAGGTGA
ACGACTGGGTTTCGGAATCACTATTCTGCTAAACATCACAATGTTTATGA
CATTCATATCGGAAAAGCTTCCCGAGAAATCGAACAACCGACCTCTTATT
GGCCTGCTCTTCTCCGTTCTCTTTTTCATCTATTCACTCGGACTCGCTCT
AGCCTCTATGACTACATTCTTCTCGTCCAGGCTAGGACCAGTCCCTCACT
GGTTACGCAAGTTTGCTGCTCCAGCTGCAACTGAAGAGGCTTTTATTGTT
GAAAACCAAACCTCAGAAAACATTGAAGATGAGGAGATTAATACGACAAA
AGATGGACCGAAAATCCAGACAATTAGTCGGGGATCCAATTCAGAGGTCA
CGTGGGCGATGGTAATGAGATCATTGGACAAATATCTCTTTTACATTTTC
TTGGTCATTTCTGTATTGTTACCGATTATTATCGGTCTCTCCTTGGATCA
GAACTTTTTTGCAggatggaaaaatatttttaatgtttgaATGTTTACGA
TAATTCCTCTAACCTCACAGCTCTTTTTTAACTGGAAAAGTATGAAGCTT
CAAGCTTTATGTTGGTCATTCTTGTTGTCATGGTTGCAATTTGCAGTTGG
GTTGAAGATGTCCAACACTCCAAGGGAAGAGAGCATTCATACTGAACTGT
TCACAAACTACAATGCAAATGTGAAACCGGATGGTTTAATCAACAATACT
GTTCAAGTACATTTGGATGTCACCGTCCTCAAACTCTCCTTCTTGgacAT
CAGATCGCAAGTTCTGTCGATCCAAACCTTCACCACCCTGAGATGGTTTG
ACAAACGTTTGATGTGGGATCCAAAGGCACACCATGACATAACACAAATA
TCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTTGTATAATGA
TGCAGATAACGATTATACAACACATAATGAAATTTACCGAACGAACGTTC
AAATCCATCATAAAGGTATGTTGACATGGACCTCAAATATCGAGTGGAAA
GCCAATTGCGAAGTAGACATCACCTGGTTCCCGCTTGATAAACAGGTTTG
CAACTTGTTGTACGGTTCATTGTCATACACATCAGAGCAATTATCTCTGG
TACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTGTGAAAAGAGGAGAT
CGAAACTTCGTACAAAGTGGTGAATGGGACGTCAAAGACATCAACATCAA
ATCAGTGGAACAGAAATTCCCATGCTGTAGAGACAATTTCTCTGCTCTTT
CGTATACCGTAGCTTTGTCACGTTTCCCGCAATTCTATTTCTTGTATatg
tttttcccgattttctcgcaattctttttgtttttgatggtttttcacAT
TAGACCCGAATCAGGTGAACGACTGGGTTTCGGAATCACTATTCTGCTAA
ACATCACAATGTTTATGACATTCATATCGGAAAAGCTTCCCGAGAAATCG
AACAACCGACCTCTTATTGGCCTGCTCTTCTCCGTTCTCTTTTTCATCTA
TTCACTCGGACTCGCTCTAGCCTCTATGACTACATTCTTCTCGTCCAGGC
TAGGACCAGTCCCTCACTGGTTACGCAAGTTTGCTGCTCCAGCTGCAACT
GAAGAGGCTTTTATTGTTGAAAACCAAACCTCAGAAAACATTGAAGATGA
GGAGATTAATACGACAAAAGATGGACCGAAAATCCAGACAATTAGTCGGG
GATCCAATTCAGAGGTCACGTGGGCGATGGTAATGAGATCATTGGACAAA
TATCTCTTTTACATTTTCTTGGTCATTTCTGTATTGTTACCGATTATTAT
CGGTCTCTCCTTGGATCAGAACTTTTTTGCAggatggaaaaatattttta
atgtttgaATGTTTACGATAATTCCTCTAACCTCACAGCTCTTTTTTAAC
TGGAAAAGTATGAAGCTTCAAGCTTTATGTTGGTCATTCTTGTTGTCATG
GTTGCAATTTGCAGTTGGGTTGAAGATGTCCAACACTCCAAGGGAAGAGA
GCATTCATACTGAACTGTTCACAAACTACAATGCAAATGTGAAACCGGAT
GGTTTAATCAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAA
ACTCTCCTTCTTGgacATCAGATCGCAAGTTCTGTCGATCCAAACCTTCA
CCACCCTGAGATGGTTTGACAAACGTTTGATGTGGGATCCAAAGGCACAC
CATGACATAACACAAATATCTGTTCCCAATTCATTGCTCTGGACTCCTGA
TATCGTCTTGTATAATGATGCAGATAACGATTATACAACACATAATGAAA
TTTACCGAACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACC
TCAAATATCGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCC
GCTTGATAAACAGGTTTGCAACTTGTTGTACGGTTCATTGTCATACACAT
CAGAGCAATTATCTCTGGTACTTCGAGAGAAAGTCAGGAATATCGATGGT
TTTGTGAAAAGAGGAGATCGAAACTTCGTACAAAGTGGTGAATGGGACGT
CAAAGACATCAACATCAAATCAGTGGAACAGAAATTCCCATGCTGTAGAG
ACAATTTCTCTGCTCTTTCGTATACCGTAGCTTTGTCACGTTTCCCGCAA
TTCTATTTCTTGTATatgtttttcccgattttctcgcaattctttttgtt
tttgatggtttttcacATTAGACCCGAATCAGGTGAACGACTGGGTTTCG
GAATCACTATTCTGCTAAACATCACAATGTTTATGACATTCATATCGGAA
AAGCTTCCCGAGAAATCGAACAACCGACCTCTTATTGGCCTGCTCTTCTC
CGTTCTCTTTTTCATCTATTCACTCGGACTCGCTCTAGCCTCTATGACTA
CATTCTTCTCGTCCAGGCTAGGACCAGTCCCTCACTGGTTACGCAAGTTT
GCTGCTCCAGCTGCAACTGAAGAGGCTTTTATTGTTGAAAACCAAACCTC
AGAAAACATTGAAGATGAGGAGATTAATACGACAAAAGATGGACCGAAAA
TCCAGACAATTAGTCGGGGATCCAATTCAGAGGTCACGTGGGCGATGGTA
ATGAGATCATTGGACAAATATCTCTTTTACATTTTCTTGGTCATTTCTGT
ATTGTTACCGATTATTATCGGTCTCTCCTTGGATCAGAACTTTTTTGCAg
gatggaaaaatatttttaatgtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037898XLOC_037898Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060248-proteinTCONS_00060248-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060248-exon-scaffold_339-1491911889:269531..269881TCONS_00060248-exon-scaffold_339-1491911889:269531..269881Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1510915933:269531..269881TCONS_00060248-exon-scaffold_339-1510915933:269531..269881Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1575043694:269531..269881TCONS_00060248-exon-scaffold_339-1575043694:269531..269881Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1491911889:271390..271535TCONS_00060248-exon-scaffold_339-1491911889:271390..271535Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1510915933:271390..271535TCONS_00060248-exon-scaffold_339-1510915933:271390..271535Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1575043694:271390..271535TCONS_00060248-exon-scaffold_339-1575043694:271390..271535Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1491911889:271778..271822TCONS_00060248-exon-scaffold_339-1491911889:271778..271822Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1510915933:271778..271822TCONS_00060248-exon-scaffold_339-1510915933:271778..271822Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1575043694:271778..271822TCONS_00060248-exon-scaffold_339-1575043694:271778..271822Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1491911889:271990..272099TCONS_00060248-exon-scaffold_339-1491911889:271990..272099Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1510915933:271990..272099TCONS_00060248-exon-scaffold_339-1510915933:271990..272099Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1575043694:271990..272099TCONS_00060248-exon-scaffold_339-1575043694:271990..272099Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1491911889:272613..272757TCONS_00060248-exon-scaffold_339-1491911889:272613..272757Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1510915933:272613..272757TCONS_00060248-exon-scaffold_339-1510915933:272613..272757Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1575043694:272613..272757TCONS_00060248-exon-scaffold_339-1575043694:272613..272757Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1491911889:272897..272999TCONS_00060248-exon-scaffold_339-1491911889:272897..272999Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1510915933:272897..272999TCONS_00060248-exon-scaffold_339-1510915933:272897..272999Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1575043694:272897..272999TCONS_00060248-exon-scaffold_339-1575043694:272897..272999Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1491911889:273389..274157TCONS_00060248-exon-scaffold_339-1491911889:273389..274157Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1510915933:273389..274157TCONS_00060248-exon-scaffold_339-1510915933:273389..274157Clytia hemisphaericaexon
TCONS_00060248-exon-scaffold_339-1575043694:273389..274157TCONS_00060248-exon-scaffold_339-1575043694:273389..274157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:269531..274157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.157284	0.147247	0.077653	0.0961858	0.418523	0.244427	0.847049	1.25552	0.0523258	0.0561536	0.231525	0.136678	3.11678	3.744	0.543301	0.782241	1.22134	2.08281	0.791499	0.820574	0.167748	0.148584	6.06192	5.64081
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006202Neur_chan_lig-bd
IPR006029Neurotrans-gated_channel_TM
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
[Close]
BLAST of TCONS_00060248 vs. Swiss-Prot (Human)
Match: ACHA9 (Neuronal acetylcholine receptor subunit alpha-9 OS=Homo sapiens GN=CHRNA9 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.269e-46
Identity = 104/347 (29.97%), Postives = 177/347 (51.01%), Query Frame = 3 
Query:  312 CWSFLLSWLQFAV----GLKMSNTPREESIHTELFTNYNANVKPDGLINNTVQVHLDVTVLKLSFLDIRSQVLSIQTFTTLRWFDKRLMWDPKAHHDITQISVPNSLLWTPDIVLYNDADNDYTTHNEIYRTNVQIHHKGMLTWTSNIEWKANCEVDITWFPLDKQVCNLLYGSLSYTSEQLSLVLREKVRNIDGFVKRGD-RNFVQSGEWDVKDINIKSVEQKFPCCRDNFSALSYTVALSRFPQFYFLYMXXXXXXXXXXXLMVFHIRPESGERLGFGITILLNITMFMTFISEKLPEKSNNRPLIGLLFSVLFFIYSLGLALASMTT---FFSSRLGPVPHWLR 1328
            C SF   W+ FA       + ++    + +  +LF +Y+  ++P    +  + V L +T+ ++  +D R+Q+L+   +    W D  L WD   +  +  I +P+ L+W PDIVLYN AD++    +E   TNV + + G++TW +    K++C VD+T+FP D Q CNL +GS +Y   Q+         +I   +  GD  +F++  EW+V  +        + CC + +  +++T+ L R   FY + +  P     FL  + F++   SGE++  G+TILL +T+F   ++E +P  S N PLIG  +     + +   AL  M     F  +   PVPHW R
Sbjct:    7 CISF--CWIYFAASRLRAAETADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDE---SSEPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQV---------DIFNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMP-ASENVPLIGKYYIATMALITASTALTIMVMNIHFCGAEARPVPHWAR 338
The following BLAST results are available for this feature:
BLAST of TCONS_00060248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA92.269e-4629.97Neuronal acetylcholine receptor subunit alpha-9 OS... [more]
back to top