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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060247 ID=TCONS_00060247|Name=TCONS_00060247|organism=Clytia hemisphaerica|type=transcript|length=605bp
CCTCTATTACCAAGCAGCACGTTTTCAGGTTTGAGGTCTCGATGAACAAA
ATTATTGTAATGGAGGTAAGCCATTGCTTCCAATAATTGTGACATCCAGT
CAAACTTTTGTTTCATATTGACAGGGTCACGTAATCGGGTATTCAAGTTT
CCGCCAGGACAAAACTCAATTACAAGGAGCGCTGCTATTCCTTCAAAATC
GTAAGAATATAATTGCACAATGTTTGGGTGTCTTAAATTTATCatagaaa
aaatttcattaccGATAAGATCTTGAATCAATTTAGCTTGTTCATTACTA
TAGCTTGGCATTCTACACGAAATTCTCTTTAAAGCAAACGCTTTCCCTCT
TTCATCTTCAACTTTATAAACATCTCCAAAACTACCTTTCCCCAGCTTTT
GGACAACAACCAAATCTTGAACGGTACCATTTCTACCatcatgaatttga
aaagtcatCTGTGAATTTCTTTGAGTGCTGCCATAAGAAGATGATGTACC
CTGGCCATTCACAAGGCTTTGTCTTGCACTGGCCATATCATTAGGTATAT
CCTGtgtatcttttttctttttaggcattcatctactagaagaaaaaaaa
tgggt Run BLAST on NCBI transcript from alignment at scaffold_339:233861..238443+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060247 ID=TCONS_00060247|Name=TCONS_00060247|organism=Clytia hemisphaerica|type=transcript|length=4583bp|location=Sequence derived from alignment at scaffold_339:233861..238443+ (Clytia hemisphaerica)
CCTCTATTACCAAGCAGCACATTTTCAGGTTTGAAGTTTCTGTGAACAAA
ATTATTGTTATGGAGGTAAGTCATTGCTTCCAGTAATTGTGACATCCAGT
CAAACTTTTGTTTCATATTGACAGGGTCACGTAATCGGTTATTCAAGTTT
CCTCCAGGACAAAACTCCATAACTAGTAATGTAGATGTACTTTCAAAATC
GAAAGCATACAATTGAACAATATGAGGGTGTTTTAAGCAGGACATGGTAT
ATAGCAAATTACCAACAACATCCTGATAAAGTTTATCATTCGAGGCGCTA
TTGTTTTTTGTATTTAAATAATGTTCAGGGGTCATTTTCCTTAAAGCGAA
AACATGTTTTCTTGCATCCTCCACTTTGTAAACATCTCCAAATGCACCCT
TGTCGAGTTTACTGACGATGGTCAATTCCTGAAAACATCCACTTTTGCAG
TCCAAGATTTGGAAAGACATTTTTTAATTGTTCCAATTTGATTATGAGGT
CCATTTAACTCATTCATAATACATCCATAAAttcatatttgtttttttat
tacttATTCAATCTGAAAGTGATAAGAGaaactttattagaaaaacGATC
AAGAATACGAATTTGTATTGACAAAATATGGGGAAcagaataagaaaaaa
agtacaGCAAAGTTTAGCTGAGAGTCTGGGCCTTCAtcgtttatataaaa
aaatttcgacGTGTGTATGTACCGGACTAAACAGAAAAACAGAGAAAAGC
CAGTACTAGGCCGAGTATTTATGAAAATACAGGATCCTAgcgcagaattc
tattggctattaaacaattgttgaaatcacgtgatataattgttttgatt
ggaaatgCGCAATTTTGAGTGGCTAACAAATTCGAAATGGAACATATAAA
TACCATAATACTCTCACTGAGTAGCTTCTCATGGGATATTTATTTGGATG
GTGTAAGTTTTGGTTAGAGAGCATGAATCTCCAGACTAGGCCAAGTCATT
TAAATTGATTTCAATATTCAGTTATCTCGTATAAAGTAAGCATAAGACTG
AAAAAAATAATGGTCAGCTATCTGGTAATAATTTAATCtataaaaattac
aattatAAAAAGCGttatgaaaaatatatcaattGTAAAAAAATTGCGTA
CTAAGGTACGGAAGCCCATTAGTGCCATTTAGATTATcctttaatttttt
aacgacGAAACTAAAAAAGATGACgacgaaactgaaaaaaaatgacgacg
aaactaaaaaattgacgacgaaaatgaaaaattgacgacgaaaatgaaaa
aaaattgttacttCGTCGAACAAATTGCTTCTTGTGAATGAGATGCTGGC
GATGATGAACCAGAATAAGGATGTGATGGTGGAGATTTTTGGAACCACCG
GTGTCATTGGAATCATTGGAACTAattaatgatgaaatcaatagtgcaaa
tgatgaaatcaatggttgGTTCTATCACCCACACAATGGATTCCATCATC
TCATCATGCTACAGCTTTGATGgtgcaaatgatggaatcaaaggtgcaaa
tgatggaatcaatggtgcaaatgatggaatcaatggtgcaaatgatggaa
tcaatagtgcaaatgatggaatcaatggtgcaaatgatggaatcaatgga
gcAGATTATGGAATAAAAGCTGTAGCATGATGAGATGATGGAATCCATTG
TGCGGGTGAAAGAATcaaccattgatttcatcatttgcACTattcatttc
atcattgattagtTCAAATGATTCCATTGACACCGGTGATTCCAAAAATC
TTCTGATTCATCATTGCCAGCATCTTATTCACGGGCTTCTTCACCAGGAT
TGCattaaggacatgttttttttgactgtaccaaaatcaggttttcgaaa
atcgtgaaaatcactttattttaattatttcgtcattcgcatgatgaatt
ttcccaaaattttgatatgtattgatatttgggaagggctttaaaatgag
ctatttgaaatctcaaaattcggagtatttcaggattaattaatcataGA
GTGTTTTGGATCATATCTCACTCCATGACTCATTATTCGGTCCTGAGGAG
GTTTCTATGCATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaatttttttaaaggcc
ggagtgagttatgatcaaaacaaacaaaggacttttttaatcatttttca
ctcattttaacaATTCCCGTTTTCTTTAGTTCATTCCTTTcttatcaacc
aaacaaaaatctcaaatcacttccccgatagatagacttgtcaggaaaat
atatacgattagaattagcacctagatttcaaaaatgatcaatttgatcc
cNCAATATTTTAAATTATCtatgtagcaagatggtggaCTAAGGTGTAAA
AGTACAGACGAAAGATTCCACAAAAAATTGGCTCcatcaaattcaacaat
ttatcatttaaaaagTAAAGATGACGAAAAACAACTAAGCAATTTTCAAG
CGGTTGGTTCAGAGCATCAATGATAAAGTTAGGAGGGCTTTCTTACTGGA
ATTCACGAAGAGAAGCTGAATACAAACAAACGAAAGAAGTAAAACTAAAG
AAACACATTTATCAGCCTTCCATTTTGGCTTCTATGAAAGCCCTTCAAAT
TGTTTAATCTGATATGGTCCACAACAAATAAAAATGGAGCCCTTAACTTA
CATAGtacttatatatttttaataagCAACCCCAATTTTCGGCTCAAGGC
TAAGGTTGCTTAGAATTCTATctcaatttcaaagaaattagCTTTGACCA
TCCATTATATTATACCATAATTATACCGTTTGTCATGGTTAGTTGATCTA
AATATAGTTTTTACTTCAGGAGATAGTAAAGAAATTTGCTGATTTCAGGG
CTCGAGGCGTATAATGTGTGTGACTCGAAAGAATTGTgtaatttaaaaga
aatttcattttttataaataagaaaataaagataacACAAAATTCTCACT
GAACCAAATATTTCTTCTCCTCATTCCTTTCATCCTCGTTTTTCGttcct
gaaaaagaaaatcaaattctttATAAATAGGAAGGAAGTAGGGTAAGTAG
GTAGGTATTTCACACATAGAAATTGTAAAGGTAAAGAATCGAAGTTTTCG
ATGAAGAGATttagaagtaaaaaaaactctGCAAAAAGGTCTGAAAATCG
accagatttcaaaaaatgtttgctGTTCAACTTGTCTTTATAACAAATCT
CACCAAGAAAGGTACAACAGCAGGATTTTTTGTCAGCCTGCCCATCTTGG
AAAGGAGCTTCAGTATACAACGAAGAGGTTCTTGAATGAGAAGATTTCAT
GGATATGGCATCTTCTTGTAAATAGTGCTTTGCATCTTCAAGAACTTTCT
GCGCTCGGTTAAGACTTATTCTTTCTTCTTCACGAAAACATAACATTTCA
GTCACCATGCCAACAACCAACTTCTCCGCCTCACTTTTCAATCCGTCAAA
GGAAGGCAGGCGTGTTTTCTCAGAACGATGCATAGCAAGACCAAGGCCAA
CTTCTTTCCCACGATGATTCACAAATGCACCATAATAAGATTCACCTTGA
taagttaaatatttccttgTCAAAATAGCATAGAATATCACCCCAAGCGA
GAAAATGTCAGCCTTTTCTGTATATTTTCGATCAAAGACTTCAGGAGCGA
TCCAATACATGGTACCTGCATATTTATCCATAAATTTTTCTTCGTACTCT
GAAAGGCtatcttcgttattttttaaatctcgCGTTAAAAAGGCTCTGGA
GATACCAAAATCTGCCAGCTTCATCTGCCCTTTATCTCCAAGCAGTACGT
TTTCAGGTTTGAGGTCTCGATGAACAAAATTATTGTAATGGAGGTAAGCC
ATTGCTTCCAATAATTGTGACATCCAGTCAAACTTTTGTTTCATATTGAC
AGGGTCACGTAATCGGGTATTCAAGTTTCCGCCAGGACAAAACTCAATTA
CAAGGAGCGCTGCTATTCCTTCAAAATCGTAAGAATATAATTGCACAATG
TTTGGGTGTCTTAAATTTATCatagaaaaaatttcattaccGATAAGATC
TTGAATCAATTTAGCTTGTTCATTACTATAGCTTGGCATTCTACACGAAA
TTCTCTTTAAAGCAAACGCTTTCCCTCTTTCATCTTCAACTTTATAAACA
TCTCCAAAACTACCTTTCCCCAGCTTTTGGACAACAACCAAATCTTGAAC
GGTACCATTTCTACCatcatgaatttgaaaagtcatCTGTGAATTTCTTT
GAGTGCTGCCATAAGAAGATGATGTACCCTGGCCATTCACAAGGCTTTGT
CTTGCACTGGCCATATCATTAGGTATATCCTGtgtatcttttttcttttt
aggcattcatctactagaagaaaaaaaatgggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060247-exon-scaffold_339-1491911889:233861..233880 | TCONS_00060247-exon-scaffold_339-1491911889:233861..233880 | Clytia hemisphaerica | exon |
| TCONS_00060247-exon-scaffold_339-1510915933:233861..233880 | TCONS_00060247-exon-scaffold_339-1510915933:233861..233880 | Clytia hemisphaerica | exon |
| TCONS_00060247-exon-scaffold_339-1575043694:233861..233880 | TCONS_00060247-exon-scaffold_339-1575043694:233861..233880 | Clytia hemisphaerica | exon |
| TCONS_00060247-exon-scaffold_339-1491911889:237859..238443 | TCONS_00060247-exon-scaffold_339-1491911889:237859..238443 | Clytia hemisphaerica | exon |
| TCONS_00060247-exon-scaffold_339-1510915933:237859..238443 | TCONS_00060247-exon-scaffold_339-1510915933:237859..238443 | Clytia hemisphaerica | exon |
| TCONS_00060247-exon-scaffold_339-1575043694:237859..238443 | TCONS_00060247-exon-scaffold_339-1575043694:237859..238443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:233861..238443 + |
Blast
BLAST of TCONS_00060247 vs. Swiss-Prot (Human)
Match: AURKA (Aurora kinase A OS=Homo sapiens GN=AURKA PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.860e-16 Identity = 44/147 (29.93%), Postives = 81/147 (55.10%), Query Frame = -1
Query: 6 RNGTVQDLVVVQKLGKGSFGDVYKVEDERGK-AFALKRISCRMPSYSNEQAKL-IQDLIGNEIFSMINLRHPNIVQLYSYDFEGIAALLVIEFCPGGNLNTRLR--DPVNMKQKFDWMSQLLEAMAYLHYNNFVHRDLKPENVLLGN 434
R ++D + + LGKG FG+VY +++ K ALK + + + K ++ + E+ +LRHPNI++LY Y + L++E+ P G + L+ + ++ ++++L A++Y H +HRD+KPEN+LLG+
Sbjct: 126 RQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVL------FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGS 266
The following BLAST results are available for this feature:
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