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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060246 ID=TCONS_00060246|Name=TCONS_00060246|organism=Clytia hemisphaerica|type=transcript|length=1223bp
ccaaaataaggtaattaaAGATGTCAAAATGTCGTGTATCCTAAGAAAAC
CTCGCCCACAAAATACTTACTAAAGAAATAGCCGGCTACCGAAGGTTTCC
TTCTTGCAGGTGGATTCGTTGTTGCTTCAAGTACTGATTTCTCgcattgt
ttttcaattttagcgaGTGCGTCAAAAATGAAAGAGTGTGCTTGGTCTAG
ACTCATTCTTTTATTGTAATCATAACAAAGCAGACTTTTGATTACATTGT
TTGCAATATCTTGTTCTATTGTCTCTTTCAATCCCTCGAAACTTGGTTCA
ATGTTTTTCTCAGAACGATGCATAGCAAGTCCAAGGCCAACTTCTTTCCC
ACGATGATTCACAAATGCACCATAATAAGATTCACCTTGAtaagttaaat
atttccttgTCAAAATAGCATAGAATATCACCCCAAGCGAGAAAATGTCA
GCCTTTTCTGTATATTTTCGATCAAAGACTTCAGGAGCGATCCAATACAT
GGTACCTGCATATTTATCCATAAATTTTTCTTCGTACTCTGAAAGGCtat
cttcgttattttttaaatctcgCGTTAAAAAGGCTCTGGAGATACCAAAA
TCTGCCAGCTTCATCTGCCCTTTATCTCCAAGCAGTACGTTTTCAGGTTT
GAGGTCTCGATGAACAAAATTATTGTAATGGAGGTAAGCCATTGCTTCCA
ATAATTGTGACATCCAGTCAAACTTTTGTTTCATATTGACAGGGTCACGT
AATCGGGTATTCAAGTTTCCGCCAGGACAAAACTCAATTACAAGGAGCGC
TGCTATTCCTTCAAAATCGTAAGAATATAATTGCACAATGTTTGGGTGTC
TTAAATTTATCatagaaaaaatttcattaccGATAAGATCTTGAATCAAT
TTAGCTTGTTCATTACTATAGCTTGGCATTCTACACGAAATTCTCTTTAA
AGCAAACGCTTTCCCTCTTTCATCTTCAACTTTATAAACATCTCCAAAAC
TACCTTTCCCCAGCTTTTGGACAACAACCAAATCTTGAACGGTACCATTT
CTACCatcatgaatttgaaaagtcatCTGTGAATTTCTTTGAGTGCTGCC
ATAAGAAGATGATGTACCCTGGCCATTCACAAGGCTTTGTCTTGCACTGG
CCATATCATTAGGTATATCCTGtgtatcttttttctttttaggcattcat
ctactagaagaaaaaaaatgggt Run BLAST on NCBI transcript from alignment at scaffold_339:233240..238443+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060246 ID=TCONS_00060246|Name=TCONS_00060246|organism=Clytia hemisphaerica|type=transcript|length=5204bp|location=Sequence derived from alignment at scaffold_339:233240..238443+ (Clytia hemisphaerica)
ccaaaataaggtaattaaAGATGTCAAAATGTCGTGTATCCTAAGAAAAC
CTCGCCCACAAAATACTTACTAAAGAAATAGCCGGCTACCGAAGGTTTCC
TTCTTGCAGGTGGATTCGTTGTTGCTTCAAGTACTGATTTCTCgcattgt
ttttcaattttagcgaGTGCGTCAAAAATGAAAGAGTGTGCTTGGTCTAG
ACTCATTCTTTTATTGTAATCATAACAAAGCAGACTTTTGATTACATTGT
TTGCAATATCTTGTTCTATTGTCTCTTTCAATCCCTCGAAACTTGGTTCA
ATGTTTTTCTCAGAACGATGCATAGCAAGTCCAAGGCCAACTTCTTTCCC
ATGATGCTCCACAAATGCACCATAATAATAAGATTCACCTTGAtaagtta
aatatttccttgTCAAAATAGCATAGAATATCACCCCAAGCGAGAAAATG
TCAGCCTTTTCTGTATATTTTCGATCAAAGACTTCAGGAGCAATCCAATA
CATGGTACCTGCATATTTGTCCATAAACATGTCTTCGTATTCTGAAAGGT
AatcttcgttatttttcaaATCTCGCGTTAAAAACGGTCGAGCAAGTcca
aaatcagccatttttgcCTGCCCTCTATTACCAAGCAGCACATTTTCAGG
TTTGAAGTTTCTGTGAACAAAATTATTGTTATGGAGGTAAGTCATTGCTT
CCAGTAATTGTGACATCCAGTCAAACTTTTGTTTCATATTGACAGGGTCA
CGTAATCGGTTATTCAAGTTTCCTCCAGGACAAAACTCCATAACTAGTAA
TGTAGATGTACTTTCAAAATCGAAAGCATACAATTGAACAATATGAGGGT
GTTTTAAGCAGGACATGGTATATAGCAAATTACCAACAACATCCTGATAA
AGTTTATCATTCGAGGCGCTATTGTTTTTTGTATTTAAATAATGTTCAGG
GGTCATTTTCCTTAAAGCGAAAACATGTTTTCTTGCATCCTCCACTTTGT
AAACATCTCCAAATGCACCCTTGTCGAGTTTACTGACGATGGTCAATTCC
TGAAAACATCCACTTTTGCAGTCCAAGATTTGGAAAGACATTTTTTAATT
GTTCCAATTTGATTATGAGGTCCATTTAACTCATTCATAATACATCCATA
AAttcatatttgtttttttattacttATTCAATCTGAAAGTGATAAGAGa
aactttattagaaaaacGATCAAGAATACGAATTTGTATTGACAAAATAT
GGGGAAcagaataagaaaaaaagtacaGCAAAGTTTAGCTGAGAGTCTGG
GCCTTCAtcgtttatataaaaaaatttcgacGTGTGTATGTACCGGACTA
AACAGAAAAACAGAGAAAAGCCAGTACTAGGCCGAGTATTTATGAAAATA
CAGGATCCTAgcgcagaattctattggctattaaacaattgttgaaatca
cgtgatataattgttttgattggaaatgCGCAATTTTGAGTGGCTAACAA
ATTCGAAATGGAACATATAAATACCATAATACTCTCACTGAGTAGCTTCT
CATGGGATATTTATTTGGATGGTGTAAGTTTTGGTTAGAGAGCATGAATC
TCCAGACTAGGCCAAGTCATTTAAATTGATTTCAATATTCAGTTATCTCG
TATAAAGTAAGCATAAGACTGAAAAAAATAATGGTCAGCTATCTGGTAAT
AATTTAATCtataaaaattacaattatAAAAAGCGttatgaaaaatatat
caattGTAAAAAAATTGCGTACTAAGGTACGGAAGCCCATTAGTGCCATT
TAGATTATcctttaattttttaacgacGAAACTAAAAAAGATGACgacga
aactgaaaaaaaatgacgacgaaactaaaaaattgacgacgaaaatgaaa
aattgacgacgaaaatgaaaaaaaattgttacttCGTCGAACAAATTGCT
TCTTGTGAATGAGATGCTGGCGATGATGAACCAGAATAAGGATGTGATGG
TGGAGATTTTTGGAACCACCGGTGTCATTGGAATCATTGGAACTAattaa
tgatgaaatcaatagtgcaaatgatgaaatcaatggttgGTTCTATCACC
CACACAATGGATTCCATCATCTCATCATGCTACAGCTTTGATGgtgcaaa
tgatggaatcaaaggtgcaaatgatggaatcaatggtgcaaatgatggaa
tcaatggtgcaaatgatggaatcaatagtgcaaatgatggaatcaatggt
gcaaatgatggaatcaatggagcAGATTATGGAATAAAAGCTGTAGCATG
ATGAGATGATGGAATCCATTGTGCGGGTGAAAGAATcaaccattgatttc
atcatttgcACTattcatttcatcattgattagtTCAAATGATTCCATTG
ACACCGGTGATTCCAAAAATCTTCTGATTCATCATTGCCAGCATCTTATT
CACGGGCTTCTTCACCAGGATTGCattaaggacatgttttttttgactgt
accaaaatcaggttttcgaaaatcgtgaaaatcactttattttaattatt
tcgtcattcgcatgatgaattttcccaaaattttgatatgtattgatatt
tgggaagggctttaaaatgagctatttgaaatctcaaaattcggagtatt
tcaggattaattaatcataGAGTGTTTTGGATCATATCTCACTCCATGAC
TCATTATTCGGTCCTGAGGAGGTTTCTATGCATTCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNgtaatttttttaaaggccggagtgagttatgatcaaaacaaacaaag
gacttttttaatcatttttcactcattttaacaATTCCCGTTTTCTTTAG
TTCATTCCTTTcttatcaaccaaacaaaaatctcaaatcacttccccgat
agatagacttgtcaggaaaatatatacgattagaattagcacctagattt
caaaaatgatcaatttgatcccNCAATATTTTAAATTATCtatgtagcaa
gatggtggaCTAAGGTGTAAAAGTACAGACGAAAGATTCCACAAAAAATT
GGCTCcatcaaattcaacaatttatcatttaaaaagTAAAGATGACGAAA
AACAACTAAGCAATTTTCAAGCGGTTGGTTCAGAGCATCAATGATAAAGT
TAGGAGGGCTTTCTTACTGGAATTCACGAAGAGAAGCTGAATACAAACAA
ACGAAAGAAGTAAAACTAAAGAAACACATTTATCAGCCTTCCATTTTGGC
TTCTATGAAAGCCCTTCAAATTGTTTAATCTGATATGGTCCACAACAAAT
AAAAATGGAGCCCTTAACTTACATAGtacttatatatttttaataagCAA
CCCCAATTTTCGGCTCAAGGCTAAGGTTGCTTAGAATTCTATctcaattt
caaagaaattagCTTTGACCATCCATTATATTATACCATAATTATACCGT
TTGTCATGGTTAGTTGATCTAAATATAGTTTTTACTTCAGGAGATAGTAA
AGAAATTTGCTGATTTCAGGGCTCGAGGCGTATAATGTGTGTGACTCGAA
AGAATTGTgtaatttaaaagaaatttcattttttataaataagaaaataa
agataacACAAAATTCTCACTGAACCAAATATTTCTTCTCCTCATTCCTT
TCATCCTCGTTTTTCGttcctgaaaaagaaaatcaaattctttATAAATA
GGAAGGAAGTAGGGTAAGTAGGTAGGTATTTCACACATAGAAATTGTAAA
GGTAAAGAATCGAAGTTTTCGATGAAGAGATttagaagtaaaaaaaactc
tGCAAAAAGGTCTGAAAATCGaccagatttcaaaaaatgtttgctGTTCA
ACTTGTCTTTATAACAAATCTCACCAAGAAAGGTACAACAGCAGGATTTT
TTGTCAGCCTGCCCATCTTGGAAAGGAGCTTCAGTATACAACGAAGAGGT
TCTTGAATGAGAAGATTTCATGGATATGGCATCTTCTTGTAAATAGTGCT
TTGCATCTTCAAGAACTTTCTGCGCTCGGTTAAGACTTATTCTTTCTTCT
TCACGAAAACATAACATTTCAGTCACCATGCCAACAACCAACTTCTCCGC
CTCACTTTTCAATCCGTCAAAGGAAGGCAGGCGTGTTTTCTCAGAACGAT
GCATAGCAAGACCAAGGCCAACTTCTTTCCCACGATGATTCACAAATGCA
CCATAATAAGATTCACCTTGAtaagttaaatatttccttgTCAAAATAGC
ATAGAATATCACCCCAAGCGAGAAAATGTCAGCCTTTTCTGTATATTTTC
GATCAAAGACTTCAGGAGCGATCCAATACATGGTACCTGCATATTTATCC
ATAAATTTTTCTTCGTACTCTGAAAGGCtatcttcgttattttttaaatc
tcgCGTTAAAAAGGCTCTGGAGATACCAAAATCTGCCAGCTTCATCTGCC
CTTTATCTCCAAGCAGTACGTTTTCAGGTTTGAGGTCTCGATGAACAAAA
TTATTGTAATGGAGGTAAGCCATTGCTTCCAATAATTGTGACATCCAGTC
AAACTTTTGTTTCATATTGACAGGGTCACGTAATCGGGTATTCAAGTTTC
CGCCAGGACAAAACTCAATTACAAGGAGCGCTGCTATTCCTTCAAAATCG
TAAGAATATAATTGCACAATGTTTGGGTGTCTTAAATTTATCatagaaaa
aatttcattaccGATAAGATCTTGAATCAATTTAGCTTGTTCATTACTAT
AGCTTGGCATTCTACACGAAATTCTCTTTAAAGCAAACGCTTTCCCTCTT
TCATCTTCAACTTTATAAACATCTCCAAAACTACCTTTCCCCAGCTTTTG
GACAACAACCAAATCTTGAACGGTACCATTTCTACCatcatgaatttgaa
aagtcatCTGTGAATTTCTTTGAGTGCTGCCATAAGAAGATGATGTACCC
TGGCCATTCACAAGGCTTTGTCTTGCACTGGCCATATCATTAGGTATATC
CTGtgtatcttttttctttttaggcattcatctactagaagaaaaaaaat
gggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060246-exon-scaffold_339-1491911889:233240..233574 | TCONS_00060246-exon-scaffold_339-1491911889:233240..233574 | Clytia hemisphaerica | exon |
| TCONS_00060246-exon-scaffold_339-1510915933:233240..233574 | TCONS_00060246-exon-scaffold_339-1510915933:233240..233574 | Clytia hemisphaerica | exon |
| TCONS_00060246-exon-scaffold_339-1575043694:233240..233574 | TCONS_00060246-exon-scaffold_339-1575043694:233240..233574 | Clytia hemisphaerica | exon |
| TCONS_00060246-exon-scaffold_339-1491911889:237556..238443 | TCONS_00060246-exon-scaffold_339-1491911889:237556..238443 | Clytia hemisphaerica | exon |
| TCONS_00060246-exon-scaffold_339-1510915933:237556..238443 | TCONS_00060246-exon-scaffold_339-1510915933:237556..238443 | Clytia hemisphaerica | exon |
| TCONS_00060246-exon-scaffold_339-1575043694:237556..238443 | TCONS_00060246-exon-scaffold_339-1575043694:237556..238443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:233240..238443 + |
Blast
BLAST of TCONS_00060246 vs. Swiss-Prot (Human)
Match: PDK1L (Serine/threonine-protein kinase PDIK1L OS=Homo sapiens GN=PDIK1L PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 6.482e-28 Identity = 87/288 (30.21%), Postives = 141/288 (48.96%), Query Frame = -1
Query: 306 VVQKLGKGSFGDVYKVEDERGKA-FALKRISCRMPSYSNEQAKLIQDLIGNEIFSMINLRHPNIV--------------------------QLYSYDFEGIAAL---------LVIEFCPGGNLNTRL--RDPVNMKQKFDWMSQLLEAMAYLHYNNFVHRDLKPENVLLGD--------KGQMKLADFGISRAFLTRDLKNNEDSLSEYEEKFMDKYAGTMYWIAPEVFDRKYTEKADIFSLGVIFYAILTRKYL--TYQGESYYGAFVNHRGKEVGLGLAMHRSEK 1025
+++++G+GS+G VY+ + A A+K+I C P E +L L S I +HPN++ QL +G A V++FC GG++N L R P N K +M QL A+A+LH N +HRDLKP+N+L+ + +K+ADFG+S+ + +N E+ +S + F+ GT +++APEV++ YT KADIF+LG+I +A+L R T + G++V + V +G A+ + K
Sbjct: 10 LIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAP----ENVELA--LREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKP-NRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQTRLDTSDLEPTLKVADFGLSKV-CSASGQNPEEPVS-VNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPK 288
The following BLAST results are available for this feature:
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