TCONS_00060243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060243
Unique NameTCONS_00060243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060243 ID=TCONS_00060243|Name=TCONS_00060243|organism=Clytia hemisphaerica|type=transcript|length=1154bp
GTTCATTTTCCGTTCATATTTTTCAGattagaaatcagaaaaaagtagca
aaaaataaaaaaataaaacattgagCATTGGAAATAATTTCATCGCATCG
AACGCCATGAAACGGAGAAGTGTTTACAAGACGACTACAGAACCAGAAAG
AATTCCTTGGcataaatgtttgaaaaatggagTTCTCACTTTCTTCGATC
GTATATATTGGGCATTAAATCAACCCCTTTCATTAAAGATCGCGGTCATC
GGGCCGGAAAACTGCGGAAAGACAAGTATTATAAGACGCTTTGCTGGAGA
TATATTTTACGATGAAAAAATGAACCCGGAAGACCCTACTTTCCGTTTCA
CTAGTCTCATGAAAATACGGAACTGTTCACGACGGTTTAATGTGAAGGTT
ATAGAGGTTGATCGCAAGGATATTTCGAAGCAGAATTACGATGAGTTATT
ACAGACATCTGCCGGTATTCTGTTAGTATATTCTGTAGAGGAACCGGAAA
AATACGGAGAGGTCCTTTCCGTTATTGATAGACTGCATATCCGGAGGAAA
CCAAAGGATAACAAGAAGGAACATCAGGTTATAGTTGCTTTAGGGAACAA
AACGGAAATTTGTACGAACTTGGAACAAGTGAATCAGAACACCGAAATGA
AAGATGAACTACAAACAAAAGGGGTTGATTATTTCAGTGTTTCTGCCAAG
TCGAATTGGGGAATTTCTGAAGCAGTAAATGAACTAATTGAACAAAGCGC
ACGTAATAAGGTGATGCGATTTTcgagtaaaaagaaaaataaatcgaAAA
GACCAAAGAAAAATGGGAAAGGTCTTTTATCTGAAGATGAGAATGGAGTC
ACTTTTGATGAACTATAATCCACGCAATGTAAAGAGGGCTTTAATTAGTT
TCCTTCACGCATGGTCCTAGAAGAAGACGggtgaatttttttcagatttt
ttttatttttcataatttttagtaCCGAATTTACCCAATTATTTTCTAGg
atttttttccacttttttgacttttggcattgaaatttgttttgtatccg
tttttttgttttaattttcaagttttattttttcgtgTTTGTTGAGTATG
GATGGAATTGAACCTTATGCTGCAAGGTTCCTTTTCGAATCTAACGTGTT
TAGC
Run BLAST on NCBI

protein sequence of TCONS_00060243-protein

>TCONS_00060243-protein ID=TCONS_00060243-protein|Name=TCONS_00060243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MKRRSVYKTTTEPERIPWHKCLKNGVLTFFDRIYWALNQPLSLKIAVIGP
ENCGKTSIIRRFAGDIFYDEKMNPEDPTFRFTSLMKIRNCSRRFNVKVIE
VDRKDISKQNYDELLQTSAGILLVYSVEEPEKYGEVLSVIDRLHIRRKPK
DNKKEHQVIVALGNKTEICTNLEQVNQNTEMKDELQTKGVDYFSVSAKSN
WGISEAVNELIEQSARNKVMRFSSKKKNKSKRPKKNGKGLLSEDENGVTF
DEL
Run BLAST on NCBI

transcript from alignment at scaffold_339:215473..217988+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060243 ID=TCONS_00060243|Name=TCONS_00060243|organism=Clytia hemisphaerica|type=transcript|length=2516bp|location=Sequence derived from alignment at scaffold_339:215473..217988+ (Clytia hemisphaerica)
GTTCATTTTCCGTTCATATTTTTCAGattagaaatcagaaaaaagtagca
aaaaataaaaaaataaaacattgagCATTGGAAATAATTTCATCGCATCG
AACGCCATGAAACGGAGAAGTGTTTACAAGACGACTACAGAACCAGAAAG
AATTCCTTGGcataaatgtttgaaaaatggagTTCTCACTTTCTTCGATC
GTATATATTGGGCATTAAATCAACCCCTTTCATTAAAGATCGCGGTCATC
GGGCCGGAAAACTGCGGAAAGACAAGTATTATAAGACGCTTTGCTGGAGA
TATATTTTACGATGAAAAAATGAACCCGGAAGACCCTACTTTCCGTTTCA
CTAGTCTCATGAAAATACGGAACTGTTCACGACGGTTTAATGTGAAGGTT
ATAGAGGTTGATCGCAAGGATATTTCGAAGCAGAATTACGATGAGTTATT
ACAGACATCTGCCGGTATTCTGTTAGTATATTCTGTAGAGGAACCGGAAA
AATACGGAGAGGTCCTTTCCGTTATTGATAGACTGCATATCCGGAGGAAA
CCAAAGGATAACAAGAAGGAACATCAGGTTATAGTTGCTTTAGGGAACAA
AACGGAAATTTGTACGAACTTGGAACAAGTGAATCAGAACACCGAAATGA
AAGATGAACTACAAACAAAAGGGGTTGATTATTTCAGTGTTTCTGCCAAG
TCGAATTGGGGAATTTCTGAAGCAGTAAATGAACTAATTGAACAAAGCGC
ACGTAATAAGGTGATGCGATTTTCGAGTAAAAAGAAAANGGAGGCCTTGA
CTTCTTAAAATAGAGTGGATCACATGTTGTTTCTGTAagacgaaaatcaa
aaataattgaagGTCAAATGCATTTTATTATGATTTCTTATTTCACTCGA
GTGCTAATTGTTTTACAGTTTGCTGCTAGTGAATAATATGATTTGAGGAT
catttaaagtttttagaaagTGATGATGTTTCAAAGCTTAAAGTTTCATT
CTTATTTCAATGGAGAGGTCCGGTTGGTCCGTTGGGAGAGAACAATAGCT
GGTTCGATTCTTACACTGTCTGTGAGATGTCAAGTTttagtttcattgtt
tcaaaagattGTTTGTCTCTTCCTGATCATCAGCTCATTAAGAGTTGAGA
AAACAAAATGCAATTCTCATTTGATCTCATCCATGATCCGGTGGTCAATT
GACTGGAAATCCGGCACTTCTCCGTAGTGTGATCTTTTCTCGTCTCTTTC
TCTCTGTTTCTCTCAAGGAAGTCTGGAGATGATTGGTAGAGAGCATGACT
TATCCTGCATTATATCTTTCTTATCTACTAACTCATTGAAAGGCATATTA
CACATTCGTAATTCAATTATAATGCNCTATATTTTTCAGgttagaaatca
gaaaaaagtagcaaaaaatacaaaataaaacatCGAGCATTGGAAATAAT
TTTATCGCAGCGAACGCCATGAAACGGAGAAGTGTTTACAAGACGACTAC
AGAACCAGAAAGAATTCCTTGGcataaatgtttgaaaaatggagTTCTCA
CTTTATTCGATCGTATATATTGGGCATTAAATCAACCCCTTTCATTAAAG
ATCGCGGTAATCGGGCCGGAAAACTGCGGAAAGACAAGTATTATAAGACG
CTTCGCTGGAGATATATTTTACGATGAAAAAATGAACCCGGAAGACCCTA
CTTTCCGTTTCACTAGTCTCATGAAAATACGGAACTGTTCACGACGGTTT
AATGTGAAGGTTATAGAGGTTGATCGCAAGGATATTTCGAAGCAGAATTA
CGATGAGTTATTACAGACATCTGCCGGTATTCTGTTAGTATATTCTGTAG
AGGAACCGGAAAAATACGGAGAGGTCCTTTCCGTTATTGATAGACTGCAT
GTCCGGAGGAAACCAAAGGATAACAAGAAGGAACATCAGGTTATAGTTGC
TTTAGGGAACAAAACGGAAATTTGTACGAACTTGGAACAAGTCAATCAGA
ACACCGAAATGAAAGATGAACTACAAACAAAAGGGGTTGATTATTTCAGT
GTTTCTGCCAAGTCGAATTGGGGAATTTCTGAAGCAGTAAATGAACTAAT
TGAACAAAGTGCGCGTAATAAGGTGATGCGATTTTcgagtaaaaagaaaa
ataaatcgaAAAGACCAAAGAAAAATGGGAAAGGTCTTTTATCTGAAGAT
GAGAATGGAGTCACTTTTGATGAACTATAATCCACGCAATGTAAAGAGGG
CTTTAATTAGTTTCCTTCACGCATGGTCCTAGAAGAAGACGggtgaattt
ttttcagattttttttatttttcataatttttagtaCCGAATTTACCCAA
TTATTTTCTAGgatttttttccacttttttgacttttggcattgaaattt
gttttgtatccgtttttttgttttaattttcaagttttattttttcgtgT
TTGTTGAGTATGGATGGAATTGAACCTTATGCTGCAAGGTTCCTTTTCGA
ATCTAACGTGTTTAGC

Coding sequence (CDS) from alignment at scaffold_339:215473..217988+

>TCONS_00060243 ID=TCONS_00060243|Name=TCONS_00060243|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_339:215473..217988+ (Clytia hemisphaerica)
ATGAAACGGAGAAGTGTTTACAAGACGACTACAGAACCAGAAAGAATTCC
TTGGcataaatgtttgaaaaatggagTTCTCACTTTCTTCGATCGTATAT
ATTGGGCATTAAATCAACCCCTTTCATTAAAGATCGCGGTCATCGGGCCG
GAAAACTGCGGAAAGACAAGTATTATAAGACGCTTTGCTGGAGATATATT
TTACGATGAAAAAATGAACCCGGAAGACCCTACTTTCCGTTTCACTAGTC
TCATGAAAATACGGAACTGTTCACGACGGTTTAATGTGAAGGTTATAGAG
GTTGATCGCAAGGATATTTCGAAGCAGAATTACGATGAGTTATTACAGAC
ATCTGCCGGTATTCTGTTAGTATATTCTGTAGAGGAACCGGAAAAATACG
GAGAGGTCCTTTCCGTTATTGATAGACTGCATATCCGGAGGAAACCAAAG
GATAACAAGAAGGAACATCAGGTTATAGTTGCTTTAGGGAACAAAACGGA
AATTTGTACGAACTTGGAACAAGTGAATCAGAACACCGAAATGAAAGATG
AACTACAAACAAAAGGGGTTGATTATTTCAGTGTTTCTGCCAAGTCGAAT
TGGGGAATTTCTGAAGCAGTAAATGAACTAATTGAACAAAGCGCACGTAA
TAAGGTGATGCGATTTTcgagtaaaaagaaaaataaatcgaAAAGACCAA
AGAAAAATGGGAAAGGTCTTTTATCTGAAGATGAGAATGGAGTCACTTTT
GATGAACTATAAATGAAACGGAGAAGTGTTTACAAGACGACTACAGAACC
AGAAAGAATTCCTTGGcataaatgtttgaaaaatggagTTCTCACTTTCT
TCGATCGTATATATTGGGCATTAAATCAACCCCTTTCATTAAAGATCGCG
GTCATCGGGCCGGAAAACTGCGGAAAGACAAGTATTATAAGACGCTTTGC
TGGAGATATATTTTACGATGAAAAAATGAACCCGGAAGACCCTACTTTCC
GTTTCACTAGTCTCATGAAAATACGGAACTGTTCACGACGGTTTAATGTG
AAGGTTATAGAGGTTGATCGCAAGGATATTTCGAAGCAGAATTACGATGA
GTTATTACAGACATCTGCCGGTATTCTGTTAGTATATTCTGTAGAGGAAC
CGGAAAAATACGGAGAGGTCCTTTCCGTTATTGATAGACTGCATATCCGG
AGGAAACCAAAGGATAACAAGAAGGAACATCAGGTTATAGTTGCTTTAGG
GAACAAAACGGAAATTTGTACGAACTTGGAACAAGTGAATCAGAACACCG
AAATGAAAGATGAACTACAAACAAAAGGGGTTGATTATTTCAGTGTTTCT
GCCAAGTCGAATTGGGGAATTTCTGAAGCAGTAAATGAACTAATTGAACA
AAGCGCACGTAATAAGGTGATGCGATTTTcgagtaaaaagaaaaataaat
cgaAAAGACCAAAGAAAAATGGGAAAGGTCTTTTATCTGAAGATGAGAAT
GGAGTCACTTTTGATGAACTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037896XLOC_037896Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060243-proteinTCONS_00060243-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060243-exon-scaffold_339-1491911889:215473..216232TCONS_00060243-exon-scaffold_339-1491911889:215473..216232Clytia hemisphaericaexon
TCONS_00060243-exon-scaffold_339-1510915933:215473..216232TCONS_00060243-exon-scaffold_339-1510915933:215473..216232Clytia hemisphaericaexon
TCONS_00060243-exon-scaffold_339-1575043694:215473..216232TCONS_00060243-exon-scaffold_339-1575043694:215473..216232Clytia hemisphaericaexon
TCONS_00060243-exon-scaffold_339-1491911889:217595..217988TCONS_00060243-exon-scaffold_339-1491911889:217595..217988Clytia hemisphaericaexon
TCONS_00060243-exon-scaffold_339-1510915933:217595..217988TCONS_00060243-exon-scaffold_339-1510915933:217595..217988Clytia hemisphaericaexon
TCONS_00060243-exon-scaffold_339-1575043694:217595..217988TCONS_00060243-exon-scaffold_339-1575043694:217595..217988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:215473..217988 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9476	10.5695	3.49761	2.08331	2.30797	2.37904	9.6098	7.6851	4.01711	6.57436	2.9188	5.2158	11.8139	7.10844	11.0359	6.88605	4.92965	6.62513	11.9812	16.0086	5.38774	5.53384	9.81661	8.41805	4.45899	5.28797	17.422	12.8541	16.2372	17.4274
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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