|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060239 ID=TCONS_00060239|Name=TCONS_00060239|organism=Clytia hemisphaerica|type=transcript|length=2976bpRun BLAST on NCBI transcript from alignment at scaffold_339:105951..129236+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060239 ID=TCONS_00060239|Name=TCONS_00060239|organism=Clytia hemisphaerica|type=transcript|length=23286bp|location=Sequence derived from alignment at scaffold_339:105951..129236+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060239 vs. Swiss-Prot (Human)
Match: ABCG2 (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3) HSP 1 Score: 469.159 bits (1206), Expect = 7.116e-152 Identity = 247/510 (48.43%), Postives = 358/510 (70.20%), Query Frame = 3
Query: 531 QKTSKQILSDCSGIMKSGLNAILGPTGSGKTTLLDVLAGRKDKSQYSGNVLINGSFQKRDFRLESGFVVQEDIVMGTMTVRENLAFSAALRLPKEFTKEERERRVNQTIQDLGLFRCAETRVGTDETRGVSGGERRRTSIGMELITQPQFLFLDEPTTGLDASTASSVMMLLKRQCEKGRTIIFSIHQPRYSVFKQFDTLTLLSAGEMVYHGDPNNAITYFKDLGYPCETYNNPADHFLDIIAGNEKEQRDAVNLNK----NGQEIIAAPSFASQYKTSLIKAETDRSIYPSVEEAKFNQSHSADT-------AQVTYNSSFLKQLLCVSHRTSINVLRDPRTFASQVFTNIFMGLLIGAIYYNLDLGINTGLVNRSGVFFLVTTNMVFSNMSAVAVFLLERRIFRHESANGYYRCSAFFISKVICDVIPLRLIPILLFSCISYFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVSSSVSNIAIANLLVSLPFVLMMIFSGFLNNLSS 2027
+ K+ILS+ +GIMK GLNAILGPTG GK++LLDVLA RKD S SG+VLING+ + +F+ SG+VVQ+D+VMGT+TVRENL FSAALRL T E+ R+N+ IQ+LGL + A+++VGT RGVSGGER+RTSIGMELIT P LFLDEPTTGLD+STA++V++LLKR ++GRTIIFSIHQPRYS+FK FD+LTLL++G +++HG A+ YF+ GY CE YNNPAD FLDII G+ AV LN+ EII L + + S Y +A+ +Q + +++Y +SF QL VS R+ N+L +P+ +Q+ + +GL+IGAIY+ L +TG+ NR+GV F +TTN FS++SAV +F++E+++F HE +GYYR S++F+ K++ D++P+R++P ++F+CI YF++G + FFV + TL++++ +A+++ L +++ S +++A LL+++ FV MMIFSG L NL++
Sbjct: 57 KPVEKEILSNINGIMKPGLNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIINGDS----TAVALNREEDFKATEIIEPSKQDKPLIEKLAEIYVNSSFYKET-KAELHQLSGGEKKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVVLGLVIGAIYFGLK-NDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADAFFVMMFTLMMVAYSASSMALAIAAGQSVVSVATLLMTICFVFMMIFSGLLVNLTT 560 The following BLAST results are available for this feature:
BLAST of TCONS_00060239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.