TCONS_00060183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060183
Unique NameTCONS_00060183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060183 ID=TCONS_00060183|Name=TCONS_00060183|organism=Clytia hemisphaerica|type=transcript|length=839bp
agaaaatctaacaaataaaacttttgataCTTCCAAACAATGACAAAATG
TTGCTGTCAAGTTCAGCAAAGATATGTTTTCATAATATTTGCACATTTTG
GATTTTTCCTCATCTATGCGAGTCGTATGAACCTCAGTGTCGTATTGGTA
GCAATGGTTAATTCAACTTATGCTCATGTAAAGCCATCAAATGACCCAGA
ATGTCAAAGAATTGCAGGAAATACAACTATCCCACATAATAATGGCAGAT
TCAACTGGGATCAAAGTCAACAAGgTGTAATTTTGAGTAGTTTTTTCTAC
GGTTACATTTTAACACAAATATTTGGTGGATGGGTGTCACTTCGTTACGG
TGGCCGTAAAGTGTTTGGATGGTCGCTAATGGCAACCTCAATATTGACAT
TATTAACACCTGTGGCATCTCGAATAAGTTATTTTTGTTTGGTGACAGTC
AGAGTCCTTGAAGGTATTGTCCAAGGTGGCCTTTTTTCAGCGTTGAATCA
GTTGGTATCACAATGGGTTCCACAAACTCAAGTCACGTCTTTCTTTGTTG
TTGTGTATACAGGTTTACAATCAGGATCAGTGGTAGCTTTGTCAACTTCT
GGTTACCTTGCCGACTCATCTTATGGATGGCCTTCTTCCTTCTACTTATA
CGGAGGTTTATCTTTCATTGTATCAGTTTTATGGTTCATATTTGTTTACG
ATTCACCATCTCAGCATCCTTTCATATCAGATGAAGAAAANTATTTGTTT
ACGATTCACCATCTCAGCATCCTTTCATATCTGATGAAGAAAGGACCTAC
ATACAGAAACATGTGAAAAAGGTGTCGGAATCCAATAAG
Run BLAST on NCBI

protein sequence of TCONS_00060183-protein

>TCONS_00060183-protein ID=TCONS_00060183-protein|Name=TCONS_00060183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MTKCCCQVQQRYVFIIFAHFGFFLIYASRMNLSVVLVAMVNSTYAHVKPS
NDPECQRIAGNTTIPHNNGRFNWDQSQQGVILSSFFYGYILTQIFGGWVS
LRYGGRKVFGWSLMATSILTLLTPVASRISYFCLVTVRVLEGIVQGGLFS
ALNQLVSQWVPQTQVTSFFVVVYTGLQSGSVVALSTSGYLADSSYGWPSS
FYLYGGLSFIVSVLWFIFVYDSPSQHPFISDEEXYLFTIHHLSILSYLMK
KGPTYRNM
Run BLAST on NCBI

transcript from alignment at scaffold_336:191015..198476-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060183 ID=TCONS_00060183|Name=TCONS_00060183|organism=Clytia hemisphaerica|type=transcript|length=7462bp|location=Sequence derived from alignment at scaffold_336:191015..198476- (Clytia hemisphaerica)
AGAAAATCTAACAAATAAAACTTTTGATACTTCCAAACAATGACAAAATG
TTGCTGTCAAGTTCAGCAAAGATATGTTTTCATAATATTTGCACATTTTG
GATTTTTCCTCATCTATGCGAGTCGTATGAACCTCAGTGTCGTATTGGTA
GCAATGGTTAATTCAACTTATGCTCATGTAAAGCCATCAAATGACCCAGA
ATGTCAAAGAATTGCAGGAAATACAACTATCCCACATAATGTAAGAGATT
TGAACTGGCACACAACGTTGTTTCAACGTTTATCTAACATTCACAACGTC
CATATAACGTTAGATCAACGTTGAAACAACGTTGTGTGCCAGCTGGGTTG
AACTACATACTATGCTGCCTATACCGTTTTTTTATGTTGAGGGGTTCTTA
GTCCCCAATTTGTGAGTATTTTTGTGTAATTAGGTGATTAAGAGTTCATA
AAGCCGTGAAATGTAAATAGCTAATTACCGTATTACTTCGAAAAAAGCTC
CTTTTTTAAACGCCCTTTCCCGTCGAATAAGCGCCCCCTCCCAAAAACCA
AAAAAATAATAAAGTTTTATTTGAAGTAATATCGCATGTGATTCTCTGAT
GGCGTAATTTTCATCTTACTAAATTGCGCAATATTTTATATTGTCACTTC
TGAACTCTGTTATTTTCGCATCACTTTACATTATTTTTCAGAATGGCAGA
TTCAACTGGGATCAAAGTCAACAAGGTTAATTCCAATTTATAACTTATTA
ACCTATTNGATTCAACTGGGATCAAAGCCAACAAGGTTAATTCCAATTTA
TGACTTATTAACCTATCAGCCCCTTAACAGCGCGGTCGGCTTGTTAGAGG
ACTGGTAATAATCTTATAAGGAAAATCTTTTCTCGGCGCACGGCATTTTT
AGTCTGCCTCGATAAACAAAAAAAAAATAGAATTCCTGCTAAGACTATAC
TCCATGCGAGAGACATTTTCTCGAGTCCGTTTCGTAATAACAACTCGATA
GAGGTATGAAATAAAAGTTCCCTGTATGTGTTGAAAAGTGCCAGAATGAG
GGCTAGAAAAGAGAATAAGAATGTCCCGGTTGAAATGTTCAGAAAGATTA
ATTAGGGTTAACCACTGAACGTCATATAAACCTTGGAGGAAGTTTCTCAA
TCCCGGCAAAGCAAAATTTTTGATCGGAGTTCTTTTGAGAGTGGTACCCT
AATTTTCCTCCAATCTTTGTGATGGTGAAGCGCCGTTTGACGTTGATTTT
TAAACACTGGAATGGCTTCTCCGATCAAAGATTGCGAATTTAACTTTCTA
AATGTCAGCGGGGTAAACCTTTTGGTACAGTAGCTCCATGTACTACTTTC
TTTATAAATACTTCTTTCATTTTTACCTTTTTAGGTGTAATTTTGAGTAG
TTTTTTCTACGGTTACATTTTAACACAAATATTTGGTGGATGGGTGTCAC
TTCGTTACGGTGGCCGTAAAGTGTTTGGATGGTCGCTAATGGCAACCTCA
ATATTGACATTATTAACACCTGTGGCATCTCGAATAAGTTATTTTTGTTT
GGTGACAGTCAGAGTCCTTGAAGGTATTGTCCAAGTAAGTCCCCCAGCTG
GCACACAACGTTGTTTTAACGTTCAAACAAGAATCGCAAAATTGCGACTA
AATATTTCCTTAAAAATGAAGGTCATTATTGACATATATAAAAAAGCACA
CATAATAAAGTATACATATATATTTGTCCAGAAAGAACGAGCATGTTTTT
TGCTTTGATTTGGTGTTTAAAAATATGTACTTATCAGTCCTAAAAAAAAT
ACAAATTTGAATATAATGAGGGCAATAAGTCTGATTAAATGTTACTTTAT
ACACAAGATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTAAAAATCTATCTTTAATAGCAACAAAGAAAAA
AATGTGGCTCAAAGTTTTAAAGCATTTAAATAGCTTGTAAACAGTAGACC
TTTTTTTAAAGAGGCAGCCATATCGAATAATTATGTACTCCAGCATAACA
ATGATACAGGCATGCATAATTACTGTATCATGCATATTTTAAAAATTCAG
TAGGTATAGAGAATTCAAGATTTGAAAACAGACACTGCATTGGTTTACAA
GACTAGACTAGAGAAAGATGTCAACCATCCACACGGTTCATGAAAAAAAT
AAAGTATTTATCAAAAACAGGTTCTCTTTTTTTGGTAATCAATACACCGT
TTAACAGGTGTTGGTTGCGCACGCGTATATACAATTTTCTATTGTTTTGA
TTTTGGCAACCACAAGAAACTTCACTCTCCCCCGTAAAAAATGGTAGGTA
AACATCCAGTTCTCATAAGAAAACCCAGCAGANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTCTTGATGAATTTTTGTGAAATTTTCAGGAGAGATACA
TAAAATTGTCATTAATATCATGTTCAAACATCTAAAACATTCTCTTTAAA
GGAAGGAAAAAAAATAGCAATGTTTACATTTCTCTAACCTTCCAGCCACA
GTACTAAATTGAGCATTTTTACCTACCGCCTCTACGGTGGAGATGGCGAG
ACTGTTAAACGGTGTATTCCAACAAACAACAATCAATATACCGTAACAGG
ATCCCAACCAACAAAACCCACACCACCAAAATTGTAAAAATAAGTCAATA
TAATTTCTATCAACAATTTCTCGTAAAATGTTTTTTTTTCCAACATTCTG
ACTGTCTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTCCGACCCTTACAGTGCATTTGAGGTGCCTTGAAAAAGACACCCTTA
GTGCCCGCACATACCCGTCGGTCCTTTTGCCCAGCTGCCCCCCCCGGGAT
ATCTCAGTAATTAGTCATTAGAAGTAAATACATGTTGACGACCAATAGAC
CGACCAACAACGGTAAGGGTCCAGTGAGCACTTAGTGAGGTCCCTTATCT
TGAAAGAAAGACATCAAAAACCCAAATAAGAAAAAAAACTACTTGGAATC
GAAAAATATAATCAAGAATGAGGAACCGATATAAAAATGGCGGAAAGTTT
TACGTTCCACCTAAGCAAAAATTTTAGAAATTGAGAACTATGATATACTA
AATGGTCGCTTAATCGCGCCACCTAGTCTATTAAAAAGCTTTAATTTCTT
TAATTTATGGATTTCAAGCTACTAGAGATTGGATGAATTTTGTTAATGTT
GTACCATCCACATCATCCACCAAAACGTCAATACCGTTCTACCTCGAATA
AACGCGCTATCTAATTCGATTTTCAAGAGGATTGGATTTTTACCGAATAA
GGGAGCGTATCGAATGGTAGAATGTCGTTAATGAGAGTTTCCTGATGACC
GTGACTTTCAATATTATCGAATAATGGAGTGCATCGAATATTAGTGCGTC
GAATTGGAGAGCGTCTTGAAATCTAAATGACTGTCTATTCGAGAAGGATT
GTAGAAATAGTTCGGTATGAAACATCACTATAAAATCTCAGGGTTGTGGT
TTCGATCCCAAAACAGCGAATTAATAGCTTAGATTGAGTAGTCTGATCTA
GGCGGTAAGTCACTGGAAGCTGAGAGTAGGGATCACTGACCTTTATATAT
CCCTGGACCAAGCAATATCCGCCATCTTTGATCGGAGTTTTTTTGGAATT
GGAACCCGAGAAGAAGCCATTGCAATGTTGAAAATTAACGTCTAACGTCG
CTACATCATCAAAAGAATTTGAGGAAAAGTAGACCTAGCGCTCTCGATGC
ATTTACACCGCTATCGAGTAGTGCCGCCATTAGGGTACCACTTTTCAAAA
AACTCCGATCAAAGATTTTGCTTGGCTGGAATTGAGAAGCTTGGTCCAGG
GTATATAAAGGTCAGTGGTAGGGATGCACCTAAACATTCGATCTCCCAGG
TCTAGTGCAAATAGAACAGGGGATGAAATCAATCACTCCCGGCTCCGCCG
ACAGGCACCAGATGTACTTACTATATACTATACCTATACTCATACTTATT
ATTTCTTTGTCATAGGGTGGCCTTTTTTCAGCGTTGAATCAGTTGGTATC
ACAATGGGTTCCACAAACTCAAGTCACGTCTTTCTTTGTTGTTGTGTATA
CAGGTAGAGTTGTCTCTTTCTAATTCGATATTCAAGTGACCAAAACTTTT
CTTCGAATTAGAGAATGATTCGTATAATAAAGGGCGTTTCTACTTTCCCA
CTGAGCGAAGTCGACGGTTTGATTTGAATTATAGATGTTCGAAATATAGA
GGTTCGAATTAAAGAGACTTGATTTGGATCAGCAACAAGACAATTTAATG
CACCTATCAACCCTTGACTGCGCGGTCGGGTTTTGAGGGGACTGGTAATG
AATTTACAAGAAAATGACGTCTCTAAACTCATTGTTTAAGAAAATGTCAA
TGCAACGACTTCAGACATTTTGACGTCATTCCTTCATTGTAAGCTCGAAC
CCAGTTTCCTCACACTTTAAAGGTTTTTTACAACGAGACAGACAATTATC
AAAACTTAGGCAAACTCACTCTGAAGGTATGTCAGGGTGTGCTGACAACG
TCTCCTGAAAAACAGTATACAGTCGACTCTTATTGGAACTCGAACATGGA
ATCAGATTCGTTCGAATTACAGGGAGATTCAAGAGATTTTCTCCTTGACG
GGGACTGGAAACAAGTTCAAATAAGTAAGAGTTTACTGTAAATCTTTGAC
TCCTTTTTTTTCATGATACAGGTTTACAATCAGGATCAGTGGTAGCTTTG
TCAACTTCTGGTTACCTTGCCGACTCATCTTATGGATGGCCTTCTTCCTT
CTACTTATACGGTATGCTATATATACAGTGTGTCCCGAAAAAAGCAGACA
AATTGTTATATGAATTATATCCAATGTATAGCAATGTGCCCTCCCGGTTA
TTACCATAATGGCTTTATGGCAACTCCTGAACTTGGGCACAGGATGTACG
GTTACACATTTTGTGGATTGCATTGTGGACTCACAAAAATAATATCTTCA
CAATTTAAGCCAGACTATGTCTTCAATCTATTCAATGATCTGGGGTCTGT
ACATTTTTAACATTACTCGCGAGGGGAAAATATATCTTTAAAAGTATATG
GTCTGCTCCCACAAATAGTTGGCAATCTGCAATCATTTAGTTAAAAATGG
CTTGCGAGGGAGTACATTCAACTCTCTCTCTAATTCGACTCGAACGCTAT
CTTCCTCTTCCATGAAGATTCAATTGAAAATATTTCAAGATGTATTCTAT
AGTTTTTCTACATTTACATTTATCAGTAGTTTTATTCTCAACTTCAGTTG
AGCTAGAATCTGAGAATGTCTGTGTGTCTGTCTGTGTGTCTGTCTGTCTG
TCTGTCACAAAAACTTTAGGGCAGCCTGGAGACTTCAAAAATGCTTGGAT
TTGGCTGAAATTTGGCACACTTGTTCCTTGGGTCAATATCTGGGGGTATT
TTTTTCATTTTTTGAAAATTTTAATTTTTGGGGCCTAGGGACGAGTTTTT
CGCCAAAACGAAGCTAAAACTTTGGGGCAGCCTGGAAACTTCAAAAATTG
TCGGATTTAGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTAGG
GGTGTTTTTTTTATTTTTCAAAAATCTTGATTTTTGGGGCCTGGGGACGA
GTTTTTCGCCAAAACGAGGCTAAAACTTTAGAGCAGAGCCTGCAGGCCTC
AAAAATGGTTGGATTTGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAA
TATCTGGGGGTCTACAATTGGGCCTATGAATAATTTGAAGCCACTGAAGT
TGAGCCCAGTGTGTTGCGCACGTTCGACTATATTCTTAATAATGTAGCTT
AAGACATTCGACTCGAACGCTGTCTTCCTCTTCCACGGAAATTTAGTTGA
AAATATTTCAAGATGTGATTTCAAAGTATCCAGTTAAATGAGAAAGTCAA
CAAAATTTCATTTATTCAGCCGAAGCTTTTCGGTATAACCATGCCATGAT
CAATGCTAGATCTCGCAAAAAAAAACTCAAGATTTTTCTTTGATCTATCT
TCATTTCATTTATAGGAGGAATTTCTGTCATCGTGTCAGTTTTATGGTTC
ATATTCATAATAATGTAGCTTATGACATTCGACTCGAACGCTATTTTCCT
CTTCAATCGTGGAGATTTAGTTGAACCAAATATTTCAAGATTTATTCCTT
ACTTTTTCTACATTTCCATTCATAGGAGGTTTATCTTTCATTGTATCAGT
TTTATGGTTCATATTTGTTTACGATTCACCATCTCAGCATCCTTTCATAT
CAGATGAAGAAAANTATTTGTTTACGATTCACCATCTCAGCATCCTTTCA
TATCTGATGAAGAAAGGACCTACATACAGAAACATGTGAAAAAGGTGTCG
GAATCCAATAAG

Coding sequence (CDS) from alignment at scaffold_336:191015..198476-

>TCONS_00060183 ID=TCONS_00060183|Name=TCONS_00060183|organism=Clytia hemisphaerica|type=CDS|length=4662bp|location=Sequence derived from alignment at scaffold_336:191015..198476- (Clytia hemisphaerica)
GAGGTTTATCTTTCATTGTATCAGTTTTATGGTTCATATTTGTTTACGAT
TCACCATCTCAGCATCCTTTCATATCAGATGAAGAAAANTATTTGTTTAC
GATTCACCATCTCAGCATCCTTTCATATCTGATGAAGAAAGGACCTACAT
ACAGAAACATGTGAGTTTACAATCAGGATCAGTGGTAGCTTTGTCAACTT
CTGGTTACCTTGCCGACTCATCTTATGGATGGCCTTCTTCCTTCTACTTA
TACGGGTGGCCTTTTTTCAGCGTTGAATCAGTTGGTATCACAATGGGTTC
CACAAACTCAAGTCACGTCTTTCTTTGTTGTTGTGTATACAGGTGTAATT
TTGAGTAGTTTTTTCTACGGTTACATTTTAACACAAATATTTGGTGGATG
GGTGTCACTTCGTTACGGTGGCCGTAAAGTGTTTGGATGGTCGCTAATGG
CAACCTCAATATTGACATTATTAACACCTGTGGCATCTCGAATAAGTTAT
TTTTGTTTGGTGACAGTCAGAGTCCTTGAAGGTATTGTCCAAAATGGCAG
ATTCAACTGGGATCAAAGTCAACAAGATGACAAAATGTTGCTGTCAAGTT
CAGCAAAGATATGTTTTCATAATATTTGCACATTTTGGATTTTTCCTCAT
CTATGCGAGTCGTATGAACCTCAGTGTCGTATTGGTAGCAATGGTTAATT
CAACTTATGCTCATGTAAAGCCATCAAATGACCCAGAATGTCAAAGAATT
GCAGGAAATACAACTATCCCACATAATGAGGTTTATCTTTCATTGTATCA
GTTTTATGGTTCATATTTGTTTACGATTCACCATCTCAGCATCCTTTCAT
ATCAGATGAAGAAAANTATTTGTTTACGATTCACCATCTCAGCATCCTTT
CATATCTGATGAAGAAAGGACCTACATACAGAAACATGTGAGTTTACAAT
CAGGATCAGTGGTAGCTTTGTCAACTTCTGGTTACCTTGCCGACTCATCT
TATGGATGGCCTTCTTCCTTCTACTTATACGGGTGGCCTTTTTTCAGCGT
TGAATCAGTTGGTATCACAATGGGTTCCACAAACTCAAGTCACGTCTTTC
TTTGTTGTTGTGTATACAGGTGTAATTTTGAGTAGTTTTTTCTACGGTTA
CATTTTAACACAAATATTTGGTGGATGGGTGTCACTTCGTTACGGTGGCC
GTAAAGTGTTTGGATGGTCGCTAATGGCAACCTCAATATTGACATTATTA
ACACCTGTGGCATCTCGAATAAGTTATTTTTGTTTGGTGACAGTCAGAGT
CCTTGAAGGTATTGTCCAAAATGGCAGATTCAACTGGGATCAAAGTCAAC
AAGATGACAAAATGTTGCTGTCAAGTTCAGCAAAGATATGTTTTCATAAT
ATTTGCACATTTTGGATTTTTCCTCATCTATGCGAGTCGTATGAACCTCA
GTGTCGTATTGGTAGCAATGGTTAATTCAACTTATGCTCATGTAAAGCCA
TCAAATGACCCAGAATGTCAAAGAATTGCAGGAAATACAACTATCCCACA
TAATGAGGTTTATCTTTCATTGTATCAGTTTTATGGTTCATATTTGTTTA
CGATTCACCATCTCAGCATCCTTTCATATCAGATGAAGAAAANTATTTGT
TTACGATTCACCATCTCAGCATCCTTTCATATCTGATGAAGAAAGGACCT
ACATACAGAAACATGTGAGTTTACAATCAGGATCAGTGGTAGCTTTGTCA
ACTTCTGGTTACCTTGCCGACTCATCTTATGGATGGCCTTCTTCCTTCTA
CTTATACGGGTGGCCTTTTTTCAGCGTTGAATCAGTTGGTATCACAATGG
GTTCCACAAACTCAAGTCACGTCTTTCTTTGTTGTTGTGTATACAGGTGT
AATTTTGAGTAGTTTTTTCTACGGTTACATTTTAACACAAATATTTGGTG
GATGGGTGTCACTTCGTTACGGTGGCCGTAAAGTGTTTGGATGGTCGCTA
ATGGCAACCTCAATATTGACATTATTAACACCTGTGGCATCTCGAATAAG
TTATTTTTGTTTGGTGACAGTCAGAGTCCTTGAAGGTATTGTCCAAAATG
GCAGATTCAACTGGGATCAAAGTCAACAAGATGACAAAATGTTGCTGTCA
AGTTCAGCAAAGATATGTTTTCATAATATTTGCACATTTTGGATTTTTCC
TCATCTATGCGAGTCGTATGAACCTCAGTGTCGTATTGGTAGCAATGGTT
AATTCAACTTATGCTCATGTAAAGCCATCAAATGACCCAGAATGTCAAAG
AATTGCAGGAAATACAACTATCCCACATAATGAGGTTTATCTTTCATTGT
ATCAGTTTTATGGTTCATATTTGTTTACGATTCACCATCTCAGCATCCTT
TCATATCAGATGAAGAAAANTATTTGTTTACGATTCACCATCTCAGCATC
CTTTCATATCTGATGAAGAAAGGACCTACATACAGAAACATGTGAGTTTA
CAATCAGGATCAGTGGTAGCTTTGTCAACTTCTGGTTACCTTGCCGACTC
ATCTTATGGATGGCCTTCTTCCTTCTACTTATACGGGTGGCCTTTTTTCA
GCGTTGAATCAGTTGGTATCACAATGGGTTCCACAAACTCAAGTCACGTC
TTTCTTTGTTGTTGTGTATACAGGTGTAATTTTGAGTAGTTTTTTCTACG
GTTACATTTTAACACAAATATTTGGTGGATGGGTGTCACTTCGTTACGGT
GGCCGTAAAGTGTTTGGATGGTCGCTAATGGCAACCTCAATATTGACATT
ATTAACACCTGTGGCATCTCGAATAAGTTATTTTTGTTTGGTGACAGTCA
GAGTCCTTGAAGGTATTGTCCAAAATGGCAGATTCAACTGGGATCAAAGT
CAACAAGATGACAAAATGTTGCTGTCAAGTTCAGCAAAGATATGTTTTCA
TAATATTTGCACATTTTGGATTTTTCCTCATCTATGCGAGTCGTATGAAC
CTCAGTGTCGTATTGGTAGCAATGGTTAATTCAACTTATGCTCATGTAAA
GCCATCAAATGACCCAGAATGTCAAAGAATTGCAGGAAATACAACTATCC
CACATAATGAGGTTTATCTTTCATTGTATCAGTTTTATGGTTCATATTTG
TTTACGATTCACCATCTCAGCATCCTTTCATATCAGATGAAGAAAANTAT
TTGTTTACGATTCACCATCTCAGCATCCTTTCATATCTGATGAAGAAAGG
ACCTACATACAGAAACATGTGAGTTTACAATCAGGATCAGTGGTAGCTTT
GTCAACTTCTGGTTACCTTGCCGACTCATCTTATGGATGGCCTTCTTCCT
TCTACTTATACGGGTGGCCTTTTTTCAGCGTTGAATCAGTTGGTATCACA
ATGGGTTCCACAAACTCAAGTCACGTCTTTCTTTGTTGTTGTGTATACAG
GTGTAATTTTGAGTAGTTTTTTCTACGGTTACATTTTAACACAAATATTT
GGTGGATGGGTGTCACTTCGTTACGGTGGCCGTAAAGTGTTTGGATGGTC
GCTAATGGCAACCTCAATATTGACATTATTAACACCTGTGGCATCTCGAA
TAAGTTATTTTTGTTTGGTGACAGTCAGAGTCCTTGAAGGTATTGTCCAA
AATGGCAGATTCAACTGGGATCAAAGTCAACAAGATGACAAAATGTTGCT
GTCAAGTTCAGCAAAGATATGTTTTCATAATATTTGCACATTTTGGATTT
TTCCTCATCTATGCGAGTCGTATGAACCTCAGTGTCGTATTGGTAGCAAT
GGTTAATTCAACTTATGCTCATGTAAAGCCATCAAATGACCCAGAATGTC
AAAGAATTGCAGGAAATACAACTATCCCACATAATGAGGTTTATCTTTCA
TTGTATCAGTTTTATGGTTCATATTTGTTTACGATTCACCATCTCAGCAT
CCTTTCATATCAGATGAAGAAAANTATTTGTTTACGATTCACCATCTCAG
CATCCTTTCATATCTGATGAAGAAAGGACCTACATACAGAAACATGTGAG
TTTACAATCAGGATCAGTGGTAGCTTTGTCAACTTCTGGTTACCTTGCCG
ACTCATCTTATGGATGGCCTTCTTCCTTCTACTTATACGGGTGGCCTTTT
TTCAGCGTTGAATCAGTTGGTATCACAATGGGTTCCACAAACTCAAGTCA
CGTCTTTCTTTGTTGTTGTGTATACAGGTGTAATTTTGAGTAGTTTTTTC
TACGGTTACATTTTAACACAAATATTTGGTGGATGGGTGTCACTTCGTTA
CGGTGGCCGTAAAGTGTTTGGATGGTCGCTAATGGCAACCTCAATATTGA
CATTATTAACACCTGTGGCATCTCGAATAAGTTATTTTTGTTTGGTGACA
GTCAGAGTCCTTGAAGGTATTGTCCAAAATGGCAGATTCAACTGGGATCA
AAGTCAACAAGATGACAAAATGTTGCTGTCAAGTTCAGCAAAGATATGTT
TTCATAATATTTGCACATTTTGGATTTTTCCTCATCTATGCGAGTCGTAT
GAACCTCAGTGTCGTATTGGTAGCAATGGTTAATTCAACTTATGCTCATG
TAAAGCCATCAAATGACCCAGAATGTCAAAGAATTGCAGGAAATACAACT
ATCCCACATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037858XLOC_037858Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060183-proteinTCONS_00060183-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060183-exon-scaffold_336-1575043694:198237..198476TCONS_00060183-exon-scaffold_336-1575043694:198237..198476Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1575043694:197752..197785TCONS_00060183-exon-scaffold_336-1575043694:197752..197785Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1575043694:196893..197092TCONS_00060183-exon-scaffold_336-1575043694:196893..197092Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1575043694:193324..193411TCONS_00060183-exon-scaffold_336-1575043694:193324..193411Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1575043694:192616..192705TCONS_00060183-exon-scaffold_336-1575043694:192616..192705Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1575043694:191015..191201TCONS_00060183-exon-scaffold_336-1575043694:191015..191201Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1510915933:198237..198476TCONS_00060183-exon-scaffold_336-1510915933:198237..198476Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1510915933:197752..197785TCONS_00060183-exon-scaffold_336-1510915933:197752..197785Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1510915933:196893..197092TCONS_00060183-exon-scaffold_336-1510915933:196893..197092Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1510915933:193324..193411TCONS_00060183-exon-scaffold_336-1510915933:193324..193411Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1510915933:192616..192705TCONS_00060183-exon-scaffold_336-1510915933:192616..192705Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1510915933:191015..191201TCONS_00060183-exon-scaffold_336-1510915933:191015..191201Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1491911889:198237..198476TCONS_00060183-exon-scaffold_336-1491911889:198237..198476Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1491911889:197752..197785TCONS_00060183-exon-scaffold_336-1491911889:197752..197785Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1491911889:196893..197092TCONS_00060183-exon-scaffold_336-1491911889:196893..197092Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1491911889:193324..193411TCONS_00060183-exon-scaffold_336-1491911889:193324..193411Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1491911889:192616..192705TCONS_00060183-exon-scaffold_336-1491911889:192616..192705Clytia hemisphaericaexon
TCONS_00060183-exon-scaffold_336-1491911889:191015..191201TCONS_00060183-exon-scaffold_336-1491911889:191015..191201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:191015..198476 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.433803	0.325059	0	0.0810226	2.01147	1.74084	2.28305	1.56552	1.97544	2.73651	4.22681	1.28325	2.00342	1.90481	1.51044	2.35481	1.07674	1.85216	1.40807	1.60908	1.71611	0.916046	1.58185	2.1188	8.17235	7.03371	2.13143	3.6461	3.42807	1.64938
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00060183 vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.840e-45
Identity = 87/237 (36.71%), Postives = 131/237 (55.27%), Query Frame = 1 
Query:   52 CCQVQQRYVFIIFAHFGFFLIYASRMNLSVVLVAMVNSTYAHVKPSNDPECQRIAGNTTIPHNN--GRFNWDQSQQGVILSSFFYGYILTQIFGGWVSLRYGGRKVFGWSLMATSILTLLTPVASRISYFCLVTVRVLEGIVQGGLFSALNQLVSQWVPQTQVTSFFVVVYTGLQSGSVVALSTSGYLADSSYGWPSSFYLYGGLSFIVSVLWFIFVYDSPSQHPFISD-EEXYLFT 753
            CC    RY   I A FGFF++YA R+NLSV LV MV+S            C   +    + HN    ++ WD   QG IL SFFYGYI+TQI GG+V+ + GG+ + G+ ++ T++LTL TP+A+ +    L+ +R LEG+ +G  F A++ + S W P  + +    + Y G Q G+V++L  SG +      W   FY +G +     +LW   V D+P +H  IS  E+ Y+ +
Sbjct:   35 CCSA--RYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIIC-YYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILS 268
The following BLAST results are available for this feature:
BLAST of TCONS_00060183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A59.840e-4536.71Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2[more]
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