TCONS_00060175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060175
Unique NameTCONS_00060175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060175 ID=TCONS_00060175|Name=TCONS_00060175|organism=Clytia hemisphaerica|type=transcript|length=1646bp
AAAAGTCATAATAACAGCTCCTCCGATACTAAGTCAACAAAGATACCGTG
GTCACACATACTAACATCAAGGCCAGTATGGGCGATTATGATTGGCTTGT
TTAGTCATTGTTGGGTGTGGTACATGTTGTTGACAGGACTACCATCTTAC
TTCAGTGAAGTACTTGATTTCAAACTTAAAAATAATGGGTTTCTCTCAGC
ATTACCATACCTTTCGTCGTTCGTGGTACAACAAATAGGTGGCTGGTTCG
CAGACTATCTACGGAAAAATTGGATATCAACAACTGCTGCACGCAGACTA
GCTGGTATTTTAGCATTTTATCCGTCCGCTGGCTTTCTATTGCTGGTCAG
TTATGCAGGCTGCGATCAAATCGCTTTATCAGTAGGCTACCTGGTTTTAG
CAGTGACTTTCATTACACTTAATCAAATTGGCTTGATTTGTAGTCAGGTC
GACATTGCACCAAGATATGTGGGAATAATAATGGGACTTGCCAACTCAGC
TGGTACAATCGCAGGATGTATCACACCTTCAGTTACTGGCTATTTTACCA
ACGAACATCCGACTCGTGAACAATATCGCAAAGTATTCATGATCGCGGCA
AGTATTTGTGTAATTGGTGGAACGTTCTGTAATGTTTTTGTGAGTGGAGA
ATTACAACCATGGAATGATATTTATCatgacgaagaaaattttaatgGTA
GTGACGAGGAACAGGTTTTAATAAACTCGTCAAATAGTATCAATGATGAT
GAACTTGTTGATAATTATGTTAGGACGTAAAACTCTTTTTAAATATAAGA
CATATCAAGGCCATTTCTTTTACTTTACAAACGAACATGTAAGTTTTCGT
TGTAAAGTTTCTTGAATTCGGTTGACTTATCAAGTCCATATTATAGTTAT
TTTACAAACGAGCTTGTAAGTTTTCTTTGTAAAGCCTCATGAATTCGGTT
GACTTATCAAGTCCATATTATAATTATTTTACAAACGAGCTTGTAAGTTT
TCTTTGTGAAGCCTCATGAATTCGGTTGACTCATCAAGTCCATATTATAG
TTATTTTACAAACGAGCTTGTAAGTTTTCTTTGTAAAGTCTCATGAATTC
GGTTGAATTATCAAGGCAGTGACGAGGAACAAGTTTTAATAAACTCGTCA
AACAGTATCAATATGATGAACTTGTTGATAATTATGTTANAGGAACAAGT
TTTAATAAACCCGTCAAACAGTATCAATATGATGAACTTGTTGATAATTA
TGTTAGTACGTTAATTTATTTTCAGATATAAGCTCCTTATAACTTTGTCA
GAGATAACACGTCATCTTTCTTTAATGAATATTTCGGCCAACtggctttt
ttcaaaataaagcatTTAGCTCATTATAATGGAGGCTTCATAACTAGAAT
TTTTCCGAATAATTAGTACAACTTTTCTGGtaccttcagttaacaatgcc
tgttcaagttatggagacgCCGCTATCATTTGCTAGAATTTGATCAAATC
TTTGTGTAGGGTATCTTTTAGAAACagaattttctgaaaacttTGGGATT
TTAGTCCCATGTATTGTCCATTTTTCGATCCTCAGCGATACTTTGACATC
AATTATTGCCAAGGATAGTATAGCCCGACATGCGAATTGTGCTAAa
Run BLAST on NCBI

transcript from alignment at scaffold_336:160852..174833-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060175 ID=TCONS_00060175|Name=TCONS_00060175|organism=Clytia hemisphaerica|type=transcript|length=13982bp|location=Sequence derived from alignment at scaffold_336:160852..174833- (Clytia hemisphaerica)
AAAAGTCATAATAACAGCTCCTCCGATACTAAGGTATTAGATTGATTATG
TATTTCGAGACTAGACTTTGTTAACCTCAAACCTTGATCATACCATGGTT
AGAGGATTGAGAAATTAGAATTGACGTGTCTCTGTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGAAACTTAAAAAGTCATAATAACAGCTCCTCCGATA
CTAAGGTATTGGATTGATTATGTATTTCGAGACTAGACTTTGTTAACCTC
AAACCTTGATCATACCATCATTAGAGGATTGAGAATTGACGTGTCTCTGT
ATAATGCTCAGAAACTTAAAAAGGGTCACAATTACATAGCCTATACTAGA
CGTCACCCGCGTTTTTTCTTCGCAATTAACGTCTATTCCACTTTGCGACT
TTTTCCAATGTTTTGAGCCCAGGTTTTCGGGCTAGACAGGAGAAGGGAAC
CTTTTTTGAAGCGTCTTTTCGACCATGAAATTGCTTGATATGCAACACTG
CAATGTCTTCCGACATTATTCTCAAAAAAAAGTAAAATACGAAAAACAAA
ATTTTGTTCATTCTTGACGTTTCTATACTTCTTGTATCATGATTACAAGC
AAATGTTAGCTTAAAGGCCTGTTTCCATTGATCGCGCGAGCGCGCACGCT
AGGCCAAAATTTCCTAAACTAGCACATTGACGTCACGAATTAAAGTTTCT
TGTACATAAAATACGTACGCTCTTGTACGCTTTTGTGCGCTTTTCTCCGC
TGAAAATTTCCAACTTTTCTTAGCGTACAAGAGCGCACATCTCAATCGAT
AATCTTTCAACCAATCAAGAAAGGGAAAAACTGCTGAGTAAACAAAAAAA
TTTAAACAGATATATTGTGTTCGAGTCCACCTCTTAGTTGATGGATGGAA
ATCAAACATTGATCGCGCGGAGTGTGCGGTCAAATATATTATAAGAATTT
TGACCTAGCGTGCATGCTCGCGCGATCGATGGAAACAGGCCTTTACAAGG
AAAAACGTGTTGATAAATCAAAATTTCAAAATCACATCTAACAATTATGG
GTCATAAAATTTACATAATAGAACGCATACATATAAATATTCAATAAAGC
TCTAGAGGATAAGAAGATACCGTTTTATTTAAATCAGGTTTCAAATCCCT
AATGATTAAAGATTCCTTTATATAAAGCTCTTCATCAGTTTTTCCTCCTT
CATAAACCTTCATGTTCTCTAGGGACACGCCGTGCCCAGTTCTAAAAAGA
TGTCTCGTTACAGATGTTGGTCTCTCAATATTTCGATGTTCCTTGTACCG
TGTCACAATATGTCGTTTTGTTTTCCCAATATAGTAAGACTCGCAGTCTG
TACAGTGCACTCCGTACACAACAAATGAACGTAACCTTAGAGGTATTTTA
TCTTTGAAGGTAAACAGATTTGAGAGTCGAAACGTAGTGCGGAAAACGAT
CTTTAGATCAACTTGAAGTATCGAAACGTCAAGAATTCGTCTTTACTTTT
TTTTTGAGAATAATCTGGCCCGAAGAAAATTTTTTCTGACATTCTATCAC
GGACCCAACAGCTGATTGGTTGTAAGTGACGTAAAATCGGTTAATACGTC
ACTTGCGACCAATCCTGACCAATCAGGTATTTGGTCCGTAGAACCCATTG
CAATGGTTATCATAAATTCATTCATTTAGTCAACAAAGATACCGTGGTCA
CACATACTAACATCAAGACCAGTATGGGCGGTTATGATTGGCTTGTTTAG
TCATTGTTGGGTGTGGTACATGTTGTTGACAGGACTACCATCTTACTTCA
GCGAAGTACTTGATTTCAAACTTAAAAATGTAAGTGACAATCTCAGCTAA
TACGGATTTTACAATCCTATCCAAGTACAGTCAACTCTCTCNCAGCTTCT
GGGTCTATGGAAGACATTGCAATGGTTATCATAAATTCATTCATTTAGTC
AACAAAGATACCGTGGTCACACATACTAACATCAAGGCCAGTATGGGCGA
TTATGATTGGCTTGTTTAGTCATTGTTGGGTGTGGTACATGTTGTTGACA
GGACTACCATCTTACTTCAGTGAAGTACTTGATTTCAAACTTAAAAATGT
AAGTGATAATCTCAGCTAATACGGATTTTACAATCCTATCCAAGTAAGTC
AACTCTCTATAATTCGAACTTCTGTTACTCGAATATTTCTGTAATTCTAT
CTAAATTCAATTTTTGGTTCTTTACTTTTAAAGGGACATAAAAGTAATGA
CGAAATTTGTAAACAAACCGTATGCAGCGGGATACAAAATCAAAACAAAT
GTCACATGTCAAAATAAAAAATAAAAACAAATATAAATATTAAAATATGG
CTCATTTTGATTGTTTCAATTATTGTTTTACAAGTTTGTTTTGGATACGT
GATTATAATTGTTCTCTTTAATGACACGTGGTTCGCGCAATGTTTACATT
TTACTACTTTTATGTCCCTTTCACATGTCTTAAAAATCACCATTTATTTT
CATGGTTTTGTTTAGAATCCGAGGCCAGGTGAATTTTTCTTAGTGTTCTT
ATGTTTAAGGAGAATTTCAGACTAGAAAAATTTTATTATACAGCGGAGTT
TCCTTAACTCGAACACGTACGGGGAATCAAAATTTGTTCGAGTTATGGAG
ACGATTATAAAGGATTGTTATCTGAAGGGACAAGAAAACTTGCTCGAATC
AATGCATTCAAATAACAGAGGTTCAAGTTCTCAAATGTAATAAGTTTTTT
ATTATGCCTAACTTTACTTTTCTTATAGAATGGGTTTCTCTCAGCATTAC
CATACCTTTCGTCGTTCGTGGTACAACAAATAGGTGGCTGGTTCGCAGAC
TATCTACGGAAAAATTGGATATCAACAACTGCTGCACGCAGACTAGCTGG
TATTTTAGGTAAGGTGTGGACCAAAGCAAACATGGCTCATTTCCAGAATT
TTCTTTGTTGAATGGTTTTCGTGCTATTTTTTTAACTGACACACAACGTT
ATTTCAACGTTTATCTGCTATCGAATATTTTGATTGGTTAGTTGTCATTC
GAACTTCTATTAAGTGACAAAAGTAAAAAGGAAGATTGACCCTCCAAACC
ATGGTATTACTAGTACATATCACTGAACCTTATTAACACTTTTTAAAACA
ACCCTGTCTCTTAGACCCGCTGGAACTTCTTCCCACAGTGGGGATGAAAT
GAAAATTTCTATCGAAATCCCTATGGAGATAGGAATTCTATTGTTCCAAG
GGCAAAAATCTAGTGGGATGGTTTACATTGAATTTCAAATAGAGATAAAA
ACAAATTTGATTTTCCAGGGATGTTATTGTGAGGTTATTTTCGTACCGGG
GATGAAATTATGGTCAAATTTTCCAGTGGGTAGGGGGTGGTCCCACCGGG
TCTGTGACACAGGAGTGATTTAAAAGTCCTAGACTACTAGACTATCCAAG
TTTAATGCCCACTACAACTCTATCTAATCTAGATACCCCTGGGTGTTCTT
GTATAGTCCATAATTCATGTTATGCACCACTGGAGAGTCTTCTGAGAACT
TTTAAAAAATTCCACCCAATACTTTACTTAAACAATAGAAAAAGTGACGT
ATTGGATGGAACTCTCCAGTAGTGCATATCATGAATTTCCTTTCTCTTTA
CAGCATTTTATCCGTCCGCTGGCTTTCTATTGCTGGTCAGTTATGCAGGC
TGCGATCAAATCGCTTTATCAGTAGGCTACCTGGTTTTAGCAGTGACTTT
CATTACACTTAATCAAATTGGCTTGATTTGTAGTCAGGTAAGTTTTTCTC
TATCAAATAGACTTTTGTCGGAAAAAAATACCGAAATTGTTTGAGGAGTT
CCTTCTCCCATGGATTTTTTATAGTTACCCCTTTGATTTTTGCCCAAGTC
TTAAAGATTCTTTCCTTGGATTTTGGCCAAGAGACCCACATGGTAGGTAA
AAACTCCCTAACAATAAAGCCGAAAGAAAGTCAATTTAAAAACTGGGGTA
AGTAAGTGGAGAGTAAGAAATATAGGAAAGCAATTCGTGATATGCACCAC
TGCAATGACTTCACAAAATCATGCAACTTTTCTGTTTTTGCTCCACCCAA
TACGGGGTTGGTCTAAAAAGCAGGGTAGCCAATTGGGGTAGCCAATTGGG
CTAGGTTGTGGGGTACCTAAATATTTTACAGACCAGAATAGAAATACCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGTAAATTTTCAAACGAAGCCAAGAAGGAAGACA
AAATGGCACCAGGTCTCTTGAGAAGTAACAAAGTTCAGTACCTTTGGAAA
AAAGGCTATTGTGGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAATAGGTTTCAGATTTCAAAAGTTTAGGCAAAAAGAGG
TACCCCATAACCTAGCCCAATTGGCTACCCCATTGGCTACCCTGCTTTTT
AGACCAACCCCCCAATACGTCACTATTGTTCAAGTGAAGTATTAGGTGGA
AAATTTTAAAAGCTCTCAGAAGACTCTCCAGTTGTGTATATCATGAATAA
AGGTTATCGCACTCAATTTTTCGTAGGTCGACATTGCACCAAGATATGTG
GGAATAATAATGGGACTTGCCAACTCAGCTGGTACAATCGCAGGATGTAT
CACACCTTCAGTTACTGGCTATTTTACCAACGAACATGTAAGTTTTCTTT
TTAAAACCTCTTAAATTTGTTTGACTTATCAAGACCATTTCATTTATTAC
ACACCCTTACAATGTATCCAGCTAAAAGAAGACCCTTGTAGTGCACTCTA
TCAACACCCTTACAGTGTATTTCGAGGGTCTTGAAAAACCTACTCCTAAG
GGCGGCACGTGCGTAGGTCGGACCATGAGTGCCCCTCCGGGTGAAAAACC
AACTAGAGGAAAAACTAGAGAGTGGATTATGAGAAGGGAGCAAAAGGGAT
ATTTCCACAATACTTACAATATTGTCCTGGAGCTAAAATTCGAGTATATA
CTTGGCTTCAGGGAAATGTTTCAAATGGATTTGGGGATTTCGAGTTTGTA
TTATAAATGAAGTATCCCATTCTCAATTTCGAACATTTTTAAAACATTCC
ATTGTCAAATTCGAACGTTTCATTCTCAATTTCGAACATTTTTAAAACAT
TCCATTGTCAAATTCGAACGTTTCATTCTCAATTTCGAACATTTTTAAAA
CATTCCATTGTCAAATTCGAACGTTTCATTCTCAATTTCGAACATTTTTA
AAACATTCCATTGTCAAATTCGAACGTTTCATTCTCAATTTCGAACATTT
TTAAAACATTCCATTGTCAAATTCGAACGTTTCATTCTCAATTTCGAACA
TTTTTAAAACATTCCATTTTCAATTTCAAACGTTTCATTGTTCGAAATTT
GCAACTCTTTGACATGTTGGAAGAAAAGCACCACCAAACTAATCCAACAC
GAAAAATTACACAATTCAATTAGAGAGCTTTTTTGATCACGCCGAAAATG
AAATATTTTATGGTGATCAAACTTTATCCAAAACCGTCCAACACGATTTT
TGGACCTACCTGGAGGTCCTATAAATTAACCGTTGTCCGTTCGTTTGTCC
GTCCGTCCGTCCGTTTGTCTGTTACCAGATTTTCTCGAGATTGGCTCATT
AGTTCTTTCTGATTTTTGGCACAAAGATGCAAAATGGCAATGCCCAAAAT
ATGACGGAGCCTGATTTCCGGCGGAGAATGCTGGAAATATGCCGGAAGTC
GCTGTTTTTCTGGGTTTTCATTGGAGTTTTTCCATATAATTGGTTGGTTT
TTTTTCATTCAAGAACATTATTAATAGCAATGCCCACCATCAAGCATGTT
TCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTATTTAAAAATCGA
CGGATCAACCTATTTTCGCCGGAAAGACAGTATTTCTTGAATTTTTCGAG
CTTTACTTTATATTTTTTATGAAATTTTGCACACTGTTGCAAAATGACAA
TACCTAAAATGTGACGGAGCCCGATTTTCGAAAAACATTTTTTTCCGGCC
GAAAATGCCGGAAATATGCCGGAAAAACCAGTTTTTTGACATTTTTCGAA
TTTTCATCATTAGTTTTTTCTGATTCTTTGCAGTAAGATGCGTATTCGCA
ATGCTCAAAACATGACCGAGTTCGATTTTTTGAGAAAAATTTTTTTCCGG
TCGAAAATGCCGGAAATATGCCATGAATATGCCTTATATAAAATGTTCAC
CTCTGCTCTATCTTTTCAAGGTCCTCGTTGCATTTTCTTACCCTTTGGCA
ATTCTTCGATTTTTATCTTATTATCACTGTTANTCATTGCATTTTCTTAC
CCTTTGGCAATTCTTCTATTTTTATCTTATTATCATTGTTAGGTAGGTCC
ATTTAGCATGTGGCTTGTTTTCTTCTTTTTTTGAATTTTCATTTTTTTCC
AAAAATTTGAATTGATACAAACCGGTCCAACATTTCATCCAACATCAGAA
AAAAGGCATGTTTGATTGAAATGTAGGATTGGTTTACCCTGGCCTTTATT
CTGCAAAAACATTCCACAGCTCCATTAAAACGCAGACAACTCATTCCAAT
TCTTATTCGACATTTTGAAGTCAAAACATTGTAAATTCTCTGGTCATCAA
AATGTTTTATTAAAAGTGAAGACATTGTAGTGTTTAATCGAACGATTAAG
TTACGTCACGCGCTATCTTTTGGTTTAATAGCGAGTTTATAGCGAGATTA
TGTATCTGGAATTCTCTACGGCTACGGCTAAAGCAGCGAGGGAAATGGCG
ATTAAGGCAAGTAATGGCGGGTGAAAGCAAGCTCGATATTTGACGTACGG
CATTATGTCGACTTTGCTTATACGGTGTTTGGGTGTTTTTCCCGTACAGA
GCAAAGTAGACAACGACATGTCGCCTTTGGTGACGACCTGCATGGGCAGC
CCCGCAACCGTAGCCGTAGAATATCTCCGATACATAATCTCGCTTATGTA
TTTGGGGACGGTAAAGTGACTGAAGCGACTTGAAATGACCCACAGTTCTG
ACCCCGAAAATCAATGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGT
TGGTCATGATCTAGTCAAATTAGAACCTTACCGTCTCCGTCGCTGAAAAA
CACACATGCATAAACTCGGTAATGATTGGTTGAGTAACTGCAATCTTTAT
GCAAGCTCAGTGTTTTTGAAGCAGCAATTCAGACCTCGAAAAATATAATG
TCAATTTGGCTTTAAGAACAGCCGAGTATCAATAAAAATTTACTGTCTAT
TATTGAAAGAAATGTACGCAAATGTTCCTGAAATGACATTTAAATAGAAG
AGATGAATATGTTTTTTATAGGTTTTTTCGCATTATATAATTTAAAATTT
TCTATTTTTTGTCAAAAGAAATTTACGCAAATATCATTCCTGGTATGACA
TTTAAATAGAGAGATGAAAATGTTTTTTATAGGCTTTTCGCAATATATAA
TTTAAAAATGCATATGACAACTTCATCTTACGAAGCTAAGATAAATGAAT
AGGATTTTGACAGCGTTGACTTACATATGAACCATTTTCAATTGACTAGT
TCTAAAAATATACACTGTCAAACCGAAAAATATCAACGAATTGAATTTTA
AAAACAAATCAGATTTTAGCAAGTTTTGTTAAGAGCAGAAGCTTCTTGAT
TTATTAAATCGTTTTCAACGCTAAAGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATCGTTT
TCGGACCGTAATGTACGAAGTAAATAACAGGTACTCTATTATAAAAAGAA
ATTTTCTTTCTGTAAACAATCCCCCTATATTGTTGGAAAATTGTAAATCG
AGCTGACAATATATTGTGGACACCTTTTCAATATATTGCCGGCACTAAGC
AATATATCATCAATATATTGCCTGACAATATATTGTGTAGTGTATGTAGC
CCTTAAAGATTTTTGCTCTAAGAGAAAACATCATTTTATACACTAACAGT
ACAAGTATTGGAGGAAAAAGAGTTTCACATAACCTTTAAAGATCTTCAAG
CCCGCTGTGACAAAAGTACAAAAACTGAGAATTATGATTTTCAAACTAGC
ATCATGCGTACTGTTGACTATCTTTGTCACAGCTCAAGCGCAAAAGCAGT
TTACGGCTATGTACAGGGTGATTGAGAACAAAACAGCAGTCAGTGACGAC
CATAACCCGTTCTTAAATGAGACTGTACATAGCATCATGCAATGTTTCAT
GAAGAGAATCGATCATTCTCATTTTGTTGAAGTCAAAACTGACGGAAAGA
TGCACCAATGTCGTTTCTATGAAGCAATTAAACCTAGCTCCATTCGAAGG
AGTCCTGAAGCGGGAATTGTTTTGTATCAATACAGTGTAACAGCCAGTCT
CTGTCAGGATCTTAACAGTGAGGTGAACGGTGTCTTCCAACTAACTCTTG
GTAGCGAAGAAGGTAGCCTGACCAAGGTGTACTGTGATCAGACCGAGAAC
GGAGGTGGCTGGACAACATTCCAAAGACGCATAGATGGGTCTGTTGATTT
CATCAGAAACTGGGAAGACTATAAGAATGGTTTTGGTGAGGCTGATGGGA
ATTATTGGCTTGGTTTGGAGAAGTTACATCAAATCACACATCGATATGAA
ACAGTGTTGATCAGAGTTGAAGCGACCACGAATGATGGATCTCATATTTT
TGTTATTCATGAAGGATTCAAAGTTAGCCCTGAATCAGACTTTTATAGAT
TCACAGCAGGCATTTTGACGGATGATGACAATTTATATGGGAGAGGCTGG
AACGTTGTGAATAATTATCGTTTTACGACCTATGATAAAGATAACGATAA
CTTATGGGTTGATAACTGTGCTATTTCAACTAAAGGTGGAGGCTGGTTTA
AGAGTTGTGCCTGGATAGATTTTAATAGTCCTTATTCTCAACTACGTTGG
CACCATTTTTCGAATGATATCAAATCCATTAGTTTGGCGGTCAAAGTGAA
ACACTGACCTCGTAAAAGACATTATTTCGTGTATTTCCTAACCATTTGCT
AACACAGCATTTTTAAAGAAAAGGAAGAACAGTTTTTTCTCCTTTCGGCG
CTGTGCGAGCAAAATTTTAATTGTATTTAAATTATTTAAGCATTGTTAAT
TTAAGGCTTTCTTTTTTGGACGGGTATGTATTACACCATTTATTCAACCA
GTATTTATTTCCGAATTGTATTTGAATTATTTAAGTGTTAATTTATTAAT
TTATTTTATTTATTAATTGTTAATTTAAGATTGATTCGTTGAATTGTTAA
AAAAAATTTGTAGTGGTAGAAGCAATCTAACGTCATTTTACTTCAAAAGT
GCCCTGCGTTTCTCATATTGTACTTGCTAATGTCCGATAACTATTAAGTA
TCATTAAAAGTTTTGTGGGGCCATTTCATTTTATATCCATACAGGAGGCT
GGACGAACATTTCCAGGGGATAGCCCGATAAGAATTCCAGGGGGTAAAAG
ACTGATTTAAATAAGTCCACTAGACCAGCGTCCGAGATTCAGAAAAGGCC
TTAAAAATAGTGTTCGTAGGGCACTCCTTAGATCAAGACAAATTTTTGAT
ATTATGCTCCTAATAGGGTGTGGAATTAACAAAAANTTGGCTTGGTTTGG
AGAAGTTACATCAAATCACACATCGATATGAAACAGTGTTGATCAGAGTT
GAAGCGACCACGAATGATGGATCTCATACTTTTGTTATTCATGAAGGATT
CAAAGTTAGCCCTGAATCAGACTTTTATAGATTGACAGCAGGCATTTTGA
CGGAAGGTGACTATTCATATGGGAGAGGCTGGAACGTTGTGAATAATTAT
CGTTTTACGACCTATGATAAAGATAACGATAACTATCTGGGTGGTAACTG
TGCTATTTTAGCTAAAGGTGGAGGCTGGTTTAAGAGTTGTGCCTGGATAG
ATTTTAATAGTCCTTATTCTCAAATACGTTGGTTCCATTTTTCGAATGAT
ATCAAATCCATTAGTTTGGCGGTCAAAGTGAAAAACTGACCTTGTAAAAG
ACATTATTTTGTGTATTTCCTAACCATTTGCTAACACAGCATTTTTAAAG
AAAAGGAAGAACAGTTTTTTCTCCTTTCGGCGCTGTGCAAGCAAAATTTT
AATTGTATTTAAATTATTTAAGCATTGTTAATTTAAGGCTTTCTTTTTTG
GACGGGTATTTATAACACCATTTATTCAACCAGTATTTATTTCCGAATTT
TATATAAATTATTTAAGTATTGTTAATTTAAGGCTTTCTTTTTTGGACGG
GTATTTATAACACCATTTATTCAACCAGTATTCATTTCCGAATTGTATTT
GAATTATTTAAGTGTTAATTTAAGGCTTTCTTTTTTGGACGGGTATGTAT
TACACCATTTATTCAACTAGTATTTATTTCCAAATTGTATTTACATTATT
TAAGTGTTAATTTATTAATTTATTTTATTTATTAATTGTTAATTTAAGAT
TGATTCGTTGAATTGTTAAAAAAAATTTGTAATGGTAGAAGCAATCTAAC
GTCATTTTACTTCAAAAGTGCCCTGCGTTTCTCATATTGTACTTGCTAAT
GTCCGATAACTATTACGTATCATTAAAAGTTTTGTGGGGCCATTTCATTT
TATATCCATACAGGAGGTTGGACGAACATTTCCAGGGGATAGCCCGATAA
GAATCCCAGGGGGTAAAAGACTGATTTAAATATGTCCACTAGACCAGCGT
CCGAGATTCAGAAAAGGCCTTAAAAATGGTTTTCGTAGGGCACCCCTTAG
ATCAAGACAAATTTTTGATATTATGCTCCTAATAGGGTGTGGAATTGACA
AAACAATTTTCCCTTCGAATCTCCTGCAGTTTTCGAATGAATCGATTTTT
AGTTAATCGATAGAACTTATCAAGGGTCCCCCTTNCAAAAAAATTTTCCC
TTCGAATCTCCTGCAGTTTTCGAATGAATCGATTTTTAGTTAATCGATAG
AACTTATCAAGGGTCCCCCTTTACTAACGGTTTTTTGAAGTCTGAAAATC
AAATATCTGAGGCTACCAACGGATTCAGCGTGAAAAGTAGATAAAGAAAA
TGGGGTTATTTGTTAAGTTTCGTCCACCCGGTGCCGAGAAATGGCATTTT
TAAGGCGAAAAATCGACGTTTTTGGCGTTTTTCGATGACGTCAGCATTTT
TCTGGGAGTATTTTCAGAAAAAATCATTCCCACAGCTGGATAGCCCTGAA
TTAGTAGTACTCGTATTTTTTTCTGTAAACCGACGTCCAAAATATTCTGA
CGAATGCCGTAAATTTGGCCTTTTAATACCGAGAAACGGGTCATTTTACC
GACAAATTCCGAAATACGAGTCTACACCGGATTCTCGGGAGACACCCTTA
ACTTGACCAATTACTATTAACATTTTTTCCCCTCATTTTCCTAGCCGACT
CGTGAACAATATCGCAAAGTATTCATGATCGCGGCAAGTATTTGTGTAAT
TGGTGGAACGTTCTGTAATGTTTTTGTGAGTGGAGAATTACAACCATGGA
ATGATATTTATCATGACGAAGAAAATTTTAATGGTAGTGACGAGGAACAG
GTTTTAATAAACTCGTCAAATAGTATCAATGATGATGAACTTGTTGATAA
TTATGTTAGGACGTAAAACTCTTTTTAAATATAAGACATATCAAGGCCAT
TTCTTTTACTTTACAAACGAACATGTAAGTTTTCGTTGTAAAGTTTCTTG
AATTCGGTTGACTTATCAAGTCCATATTATAGTTATTTTACAAACGAGCT
TGTAAGTTTTCTTTGTAAAGCCTCATGAATTCGGTTGACTTATCAAGTCC
ATATTATAATTATTTTACAAACGAGCTTGTAAGTTTTCTTTGTGAAGCCT
CATGAATTCGGTTGACTCATCAAGTCCATATTATAGTTATTTTACAAACG
AGCTTGTAAGTTTTCTTTGTAAAGTCTCATGAATTCGGTTGAATTATCAA
GGCAGTGACGAGGAACAAGTTTTAATAAACTCGTCAAACAGTATCAATAT
GATGAACTTGTTGATAATTATGTTANAGGAACAAGTTTTAATAAACCCGT
CAAACAGTATCAATATGATGAACTTGTTGATAATTATGTTAGTACGTTAA
TTTATTTTCAGATATAAGCTCCTTATAACTTTGTCAGAGATAACACGTCA
TCTTTCTTTAATGAATATTTCGGCCAACTGGCTTTTTTCAAAATAAAGCA
TTTAGCTCATTATAATGGAGGCTTCATAACTAGAATTTTTCCGAATAATT
AGTACAACTTTTCTGGTACCTTCAGTTAACAATGCCTGTTCAAGTTATGG
AGACGCCGCTATCATTTGCTAGAATTTGATCAAATCTTTGTGTAGGGTAT
CTTTTAGAAACAGAATTTTCTGAAAACTTTGGGATTTTAGTCCCATGTAT
TGTCCATTTTTCGATCCTCAGCGATACTTTGACATCAATTATTGCCAAGG
ATAGTATAGCCCGACATGCGAATTGTGCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037855XLOC_037855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060175-exon-scaffold_336-1575043694:174801..174833TCONS_00060175-exon-scaffold_336-1575043694:174801..174833Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1575043694:172223..172254TCONS_00060175-exon-scaffold_336-1575043694:172223..172254Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1575043694:171836..171953TCONS_00060175-exon-scaffold_336-1575043694:171836..171953Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1575043694:171026..171155TCONS_00060175-exon-scaffold_336-1575043694:171026..171155Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1575043694:170147..170280TCONS_00060175-exon-scaffold_336-1575043694:170147..170280Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1575043694:168847..168957TCONS_00060175-exon-scaffold_336-1575043694:168847..168957Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1575043694:160852..161939TCONS_00060175-exon-scaffold_336-1575043694:160852..161939Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1510915933:174801..174833TCONS_00060175-exon-scaffold_336-1510915933:174801..174833Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1510915933:172223..172254TCONS_00060175-exon-scaffold_336-1510915933:172223..172254Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1510915933:171836..171953TCONS_00060175-exon-scaffold_336-1510915933:171836..171953Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1510915933:171026..171155TCONS_00060175-exon-scaffold_336-1510915933:171026..171155Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1510915933:170147..170280TCONS_00060175-exon-scaffold_336-1510915933:170147..170280Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1510915933:168847..168957TCONS_00060175-exon-scaffold_336-1510915933:168847..168957Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1510915933:160852..161939TCONS_00060175-exon-scaffold_336-1510915933:160852..161939Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1491911889:174801..174833TCONS_00060175-exon-scaffold_336-1491911889:174801..174833Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1491911889:172223..172254TCONS_00060175-exon-scaffold_336-1491911889:172223..172254Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1491911889:171836..171953TCONS_00060175-exon-scaffold_336-1491911889:171836..171953Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1491911889:171026..171155TCONS_00060175-exon-scaffold_336-1491911889:171026..171155Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1491911889:170147..170280TCONS_00060175-exon-scaffold_336-1491911889:170147..170280Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1491911889:168847..168957TCONS_00060175-exon-scaffold_336-1491911889:168847..168957Clytia hemisphaericaexon
TCONS_00060175-exon-scaffold_336-1491911889:160852..161939TCONS_00060175-exon-scaffold_336-1491911889:160852..161939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:160852..174833 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.846947	0.832392	0.714697	0.631281	0.140612	0.127858	0.350062	0.419808	0.0793844	0.311694	0.575773	0.623306	0.000124796	0.573963	0.089741	1.12596	0.640305	1.12674	1.27402	0.771754	1.9732	1.15338	1.57096	1.40282	0.260324	0.287314	0.816601	1.32961	1.45056	1.60909
Blast
[Close]
BLAST of TCONS_00060175 vs. Swiss-Prot (Human)
Match: VGLU1 (Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.020e-42
Identity = 94/239 (39.33%), Postives = 136/239 (56.90%), Query Frame = 1 
Query:   46 PWSHILTSRPVWAIMIGLFSHCWVWYMLLTGLPSYFSEVLDFKLKNNGFLSALPYLSSFVVQQIGGWFADYLRKNWI-STTAARRLAGILAFYPSAGFLLLVSYAGCDQIALSVGYLVLAVTFITLNQIGLICSQVDIAPRYVGIIMGLANSAGTIAGCITPSVTGYFTNEHPTREQYRKVFMIAASICVIGGTFCNVFVSGELQPW---NDIYHDEENFNGSDEEQVLINSSNSINDD 750
            PW    TS PV+AI++  F   W +Y+LL   P+YF EV  F++   G +SALP+L   ++  IGG  AD+LR   I STT  R+L     F   A  LL+V Y+    +A+S  +LVLAV F      G   + +DIAPRY  I+MG++N  GT++G + P + G  T +H TRE+++ VF+IA+ +   G  F  VF SGE QPW    ++  ++  F G D+   L  S +S  +D
Sbjct:  294 PWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGLVSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKGVAIS--FLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMT-KHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPEEMSEEKCGFVGHDQ---LAGSDDSEMED 526
The following BLAST results are available for this feature:
BLAST of TCONS_00060175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU12.020e-4239.33Vesicular glutamate transporter 1 OS=Homo sapiens ... [more]
back to top