TCONS_00060173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060173
Unique NameTCONS_00060173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060173 ID=TCONS_00060173|Name=TCONS_00060173|organism=Clytia hemisphaerica|type=transcript|length=1647bp
AAAAAGTCATAATAACAGCTCCTCCGATACTAAGTCAACAAAGATACCGT
GGTCACACATACTAACATCAAGGCCAGTATGGGCGATTATGATTGGCTTG
TTTAGTCATTGTTGGGTGTGGTACATGTTGTTGACAGGACTACCATCTTA
CTTCAGTGAAGTACTTGATTTCAAACTTAAAAATAATGGGTTTCTCTCAG
CATTACCATACCTTTCGTCGTTCGTGGTACAACAAATAGGTGGCTGGTTC
GCAGACTATCTACGGAAAAATTGGATATCAACAACTGCTGCACGCAGACT
AGCTGGTATTTTAGCATTTTATCCGTCCGCTGGCTTTCTATTGCTGGTCA
GTTATGCAGGCTGCGATCAAATCGCTTTATCAGTAGGCTACCTGGTTTTA
GCAGTGACTTTCATTACACTTAATCAAATTGGCTTGATTTGTAGTCAGGT
CGACATTGCACCAAGATATGTGGGAATAATAATGGGACTTGCCAACTCAG
CTGGTACAATCGCAGGATGTATCACACCTTCAGTTACTGGCTATTTTACC
AACGAACATCCGACTCGTGAACAATATCGCAAAGTATTCATGATCGCGGC
AAGTATTTGTGTAATTGGTGGAACGTTCTGTAATGTTTTTGTGAGTGGAG
AATTACAACCATGGAATGATATTTATCatgacgaagaaaattttaatgGT
AGTGACGAGGAACAGGTTTTAATAAACTCGTCAAATAGTATCAATGATGA
TGAACTTGTTGATAATTATGTTAGGACGTAAAACTCTTTTTAAATATAAG
ACATATCAAGGCCATTTCTTTTACTTTACAAACGAACATGTAAGTTTTCG
TTGTAAAGTTTCTTGAATTCGGTTGACTTATCAAGTCCATATTATAGTTA
TTTTACAAACGAGCTTGTAAGTTTTCTTTGTAAAGCCTCATGAATTCGGT
TGACTTATCAAGTCCATATTATAATTATTTTACAAACGAGCTTGTAAGTT
TTCTTTGTGAAGCCTCATGAATTCGGTTGACTCATCAAGTCCATATTATA
GTTATTTTACAAACGAGCTTGTAAGTTTTCTTTGTAAAGTCTCATGAATT
CGGTTGAATTATCAAGGCAGTGACGAGGAACAAGTTTTAATAAACTCGTC
AAACAGTATCAATATGATGAACTTGTTGATAATTATGTTANAGGAACAAG
TTTTAATAAACCCGTCAAACAGTATCAATATGATGAACTTGTTGATAATT
ATGTTAGTACGTTAATTTATTTTCAGATATAAGCTCCTTATAACTTTGTC
AGAGATAACACGTCATCTTTCTTTAATGAATATTTCGGCCAACtggcttt
tttcaaaataaagcatTTAGCTCATTATAATGGAGGCTTCATAACTAGAA
TTTTTCCGAATAATTAGTACAACTTTTCTGGtaccttcagttaacaatgc
ctgttcaagttatggagacgCCGCTATCATTTGCTAGAATTTGATCAAAT
CTTTGTGTAGGGTATCTTTTAGAAACagaattttctgaaaacttTGGGAT
TTTAGTCCCATGTATTGTCCATTTTTCGATCCTCAGCGATACTTTGACAT
CAATTATTGCCAAGGATAGTATAGCCCGACATGCGAATTGTGCTAAa
Run BLAST on NCBI

transcript from alignment at scaffold_336:160852..173762-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060173 ID=TCONS_00060173|Name=TCONS_00060173|organism=Clytia hemisphaerica|type=transcript|length=12911bp|location=Sequence derived from alignment at scaffold_336:160852..173762- (Clytia hemisphaerica)
AAAAAGTCATAATAACAGCTCCTCCGATACTAAGGTATTGGATTGATTAT
GTATTTCGAGACTAGACTTTGTTAACCTCAAACCTTGATCATACCATCAT
TAGAGGATTGAGAATTGACGTGTCTCTGTATAATGCTCAGAAACTTAAAA
AGGGTCACAATTACATAGCCTATACTAGACGTCACCCGCGTTTTTTCTTC
GCAATTAACGTCTATTCCACTTTGCGACTTTTTCCAATGTTTTGAGCCCA
GGTTTTCGGGCTAGACAGGAGAAGGGAACCTTTTTTGAAGCGTCTTTTCG
ACCATGAAATTGCTTGATATGCAACACTGCAATGTCTTCCGACATTATTC
TCAAAAAAAAGTAAAATACGAAAAACAAAATTTTGTTCATTCTTGACGTT
TCTATACTTCTTGTATCATGATTACAAGCAAATGTTAGCTTAAAGGCCTG
TTTCCATTGATCGCGCGAGCGCGCACGCTAGGCCAAAATTTCCTAAACTA
GCACATTGACGTCACGAATTAAAGTTTCTTGTACATAAAATACGTACGCT
CTTGTACGCTTTTGTGCGCTTTTCTCCGCTGAAAATTTCCAACTTTTCTT
AGCGTACAAGAGCGCACATCTCAATCGATAATCTTTCAACCAATCAAGAA
AGGGAAAAACTGCTGAGTAAACAAAAAAATTTAAACAGATATATTGTGTT
CGAGTCCACCTCTTAGTTGATGGATGGAAATCAAACATTGATCGCGCGGA
GTGTGCGGTCAAATATATTATAAGAATTTTGACCTAGCGTGCATGCTCGC
GCGATCGATGGAAACAGGCCTTTACAAGGAAAAACGTGTTGATAAATCAA
AATTTCAAAATCACATCTAACAATTATGGGTCATAAAATTTACATAATAG
AACGCATACATATAAATATTCAATAAAGCTCTAGAGGATAAGAAGATACC
GTTTTATTTAAATCAGGTTTCAAATCCCTAATGATTAAAGATTCCTTTAT
ATAAAGCTCTTCATCAGTTTTTCCTCCTTCATAAACCTTCATGTTCTCTA
GGGACACGCCGTGCCCAGTTCTAAAAAGATGTCTCGTTACAGATGTTGGT
CTCTCAATATTTCGATGTTCCTTGTACCGTGTCACAATATGTCGTTTTGT
TTTCCCAATATAGTAAGACTCGCAGTCTGTACAGTGCACTCCGTACACAA
CAAATGAACGTAACCTTAGAGGTATTTTATCTTTGAAGGTAAACAGATTT
GAGAGTCGAAACGTAGTGCGGAAAACGATCTTTAGATCAACTTGAAGTAT
CGAAACGTCAAGAATTCGTCTTTACTTTTTTTTTGAGAATAATCTGGCCC
GAAGAAAATTTTTTCTGACATTCTATCACGGACCCAACAGCTGATTGGTT
GTAAGTGACGTAAAATCGGTTAATACGTCACTTGCGACCAATCCTGACCA
ATCAGGTATTTGGTCCGTAGAACCCATTGCAATGGTTATCATAAATTCAT
TCATTTAGTCAACAAAGATACCGTGGTCACACATACTAACATCAAGACCA
GTATGGGCGGTTATGATTGGCTTGTTTAGTCATTGTTGGGTGTGGTACAT
GTTGTTGACAGGACTACCATCTTACTTCAGCGAAGTACTTGATTTCAAAC
TTAAAAATGTAAGTGACAATCTCAGCTAATACGGATTTTACAATCCTATC
CAAGTACAGTCAACTCTCTCNCAGCTTCTGGGTCTATGGAAGACATTGCA
ATGGTTATCATAAATTCATTCATTTAGTCAACAAAGATACCGTGGTCACA
CATACTAACATCAAGGCCAGTATGGGCGATTATGATTGGCTTGTTTAGTC
ATTGTTGGGTGTGGTACATGTTGTTGACAGGACTACCATCTTACTTCAGT
GAAGTACTTGATTTCAAACTTAAAAATGTAAGTGATAATCTCAGCTAATA
CGGATTTTACAATCCTATCCAAGTAAGTCAACTCTCTATAATTCGAACTT
CTGTTACTCGAATATTTCTGTAATTCTATCTAAATTCAATTTTTGGTTCT
TTACTTTTAAAGGGACATAAAAGTAATGACGAAATTTGTAAACAAACCGT
ATGCAGCGGGATACAAAATCAAAACAAATGTCACATGTCAAAATAAAAAA
TAAAAACAAATATAAATATTAAAATATGGCTCATTTTGATTGTTTCAATT
ATTGTTTTACAAGTTTGTTTTGGATACGTGATTATAATTGTTCTCTTTAA
TGACACGTGGTTCGCGCAATGTTTACATTTTACTACTTTTATGTCCCTTT
CACATGTCTTAAAAATCACCATTTATTTTCATGGTTTTGTTTAGAATCCG
AGGCCAGGTGAATTTTTCTTAGTGTTCTTATGTTTAAGGAGAATTTCAGA
CTAGAAAAATTTTATTATACAGCGGAGTTTCCTTAACTCGAACACGTACG
GGGAATCAAAATTTGTTCGAGTTATGGAGACGATTATAAAGGATTGTTAT
CTGAAGGGACAAGAAAACTTGCTCGAATCAATGCATTCAAATAACAGAGG
TTCAAGTTCTCAAATGTAATAAGTTTTTTATTATGCCTAACTTTACTTTT
CTTATAGAATGGGTTTCTCTCAGCATTACCATACCTTTCGTCGTTCGTGG
TACAACAAATAGGTGGCTGGTTCGCAGACTATCTACGGAAAAATTGGATA
TCAACAACTGCTGCACGCAGACTAGCTGGTATTTTAGGTAAGGTGTGGAC
CAAAGCAAACATGGCTCATTTCCAGAATTTTCTTTGTTGAATGGTTTTCG
TGCTATTTTTTTAACTGACACACAACGTTATTTCAACGTTTATCTGCTAT
CGAATATTTTGATTGGTTAGTTGTCATTCGAACTTCTATTAAGTGACAAA
AGTAAAAAGGAAGATTGACCCTCCAAACCATGGTATTACTAGTACATATC
ACTGAACCTTATTAACACTTTTTAAAACAACCCTGTCTCTTAGACCCGCT
GGAACTTCTTCCCACAGTGGGGATGAAATGAAAATTTCTATCGAAATCCC
TATGGAGATAGGAATTCTATTGTTCCAAGGGCAAAAATCTAGTGGGATGG
TTTACATTGAATTTCAAATAGAGATAAAAACAAATTTGATTTTCCAGGGA
TGTTATTGTGAGGTTATTTTCGTACCGGGGATGAAATTATGGTCAAATTT
TCCAGTGGGTAGGGGGTGGTCCCACCGGGTCTGTGACACAGGAGTGATTT
AAAAGTCCTAGACTACTAGACTATCCAAGTTTAATGCCCACTACAACTCT
ATCTAATCTAGATACCCCTGGGTGTTCTTGTATAGTCCATAATTCATGTT
ATGCACCACTGGAGAGTCTTCTGAGAACTTTTAAAAAATTCCACCCAATA
CTTTACTTAAACAATAGAAAAAGTGACGTATTGGATGGAACTCTCCAGTA
GTGCATATCATGAATTTCCTTTCTCTTTACAGCATTTTATCCGTCCGCTG
GCTTTCTATTGCTGGTCAGTTATGCAGGCTGCGATCAAATCGCTTTATCA
GTAGGCTACCTGGTTTTAGCAGTGACTTTCATTACACTTAATCAAATTGG
CTTGATTTGTAGTCAGGTAAGTTTTTCTCTATCAAATAGACTTTTGTCGG
AAAAAAATACCGAAATTGTTTGAGGAGTTCCTTCTCCCATGGATTTTTTA
TAGTTACCCCTTTGATTTTTGCCCAAGTCTTAAAGATTCTTTCCTTGGAT
TTTGGCCAAGAGACCCACATGGTAGGTAAAAACTCCCTAACAATAAAGCC
GAAAGAAAGTCAATTTAAAAACTGGGGTAAGTAAGTGGAGAGTAAGAAAT
ATAGGAAAGCAATTCGTGATATGCACCACTGCAATGACTTCACAAAATCA
TGCAACTTTTCTGTTTTTGCTCCACCCAATACGGGGTTGGTCTAAAAAGC
AGGGTAGCCAATTGGGGTAGCCAATTGGGCTAGGTTGTGGGGTACCTAAA
TATTTTACAGACCAGAATAGAAATACCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAA
ATTTTCAAACGAAGCCAAGAAGGAAGACAAAATGGCACCAGGTCTCTTGA
GAAGTAACAAAGTTCAGTACCTTTGGAAAAAAGGCTATTGTGGCTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAGGTTT
CAGATTTCAAAAGTTTAGGCAAAAAGAGGTACCCCATAACCTAGCCCAAT
TGGCTACCCCATTGGCTACCCTGCTTTTTAGACCAACCCCCCAATACGTC
ACTATTGTTCAAGTGAAGTATTAGGTGGAAAATTTTAAAAGCTCTCAGAA
GACTCTCCAGTTGTGTATATCATGAATAAAGGTTATCGCACTCAATTTTT
CGTAGGTCGACATTGCACCAAGATATGTGGGAATAATAATGGGACTTGCC
AACTCAGCTGGTACAATCGCAGGATGTATCACACCTTCAGTTACTGGCTA
TTTTACCAACGAACATGTAAGTTTTCTTTTTAAAACCTCTTAAATTTGTT
TGACTTATCAAGACCATTTCATTTATTACACACCCTTACAATGTATCCAG
CTAAAAGAAGACCCTTGTAGTGCACTCTATCAACACCCTTACAGTGTATT
TCGAGGGTCTTGAAAAACCTACTCCTAAGGGCGGCACGTGCGTAGGTCGG
ACCATGAGTGCCCCTCCGGGTGAAAAACCAACTAGAGGAAAAACTAGAGA
GTGGATTATGAGAAGGGAGCAAAAGGGATATTTCCACAATACTTACAATA
TTGTCCTGGAGCTAAAATTCGAGTATATACTTGGCTTCAGGGAAATGTTT
CAAATGGATTTGGGGATTTCGAGTTTGTATTATAAATGAAGTATCCCATT
CTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAATTCGAACGTTTC
ATTCTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAATTCGAACGT
TTCATTCTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAATTCGAA
CGTTTCATTCTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAATTC
GAACGTTTCATTCTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAA
TTCGAACGTTTCATTCTCAATTTCGAACATTTTTAAAACATTCCATTTTC
AATTTCAAACGTTTCATTGTTCGAAATTTGCAACTCTTTGACATGTTGGA
AGAAAAGCACCACCAAACTAATCCAACACGAAAAATTACACAATTCAATT
AGAGAGCTTTTTTGATCACGCCGAAAATGAAATATTTTATGGTGATCAAA
CTTTATCCAAAACCGTCCAACACGATTTTTGGACCTACCTGGAGGTCCTA
TAAATTAACCGTTGTCCGTTCGTTTGTCCGTCCGTCCGTCCGTTTGTCTG
TTACCAGATTTTCTCGAGATTGGCTCATTAGTTCTTTCTGATTTTTGGCA
CAAAGATGCAAAATGGCAATGCCCAAAATATGACGGAGCCTGATTTCCGG
CGGAGAATGCTGGAAATATGCCGGAAGTCGCTGTTTTTCTGGGTTTTCAT
TGGAGTTTTTCCATATAATTGGTTGGTTTTTTTTCATTCAAGAACATTAT
TAATAGCAATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAATTGAT
TTTTGAAGCCGGAACTATTTAAAAATCGACGGATCAACCTATTTTCGCCG
GAAAGACAGTATTTCTTGAATTTTTCGAGCTTTACTTTATATTTTTTATG
AAATTTTGCACACTGTTGCAAAATGACAATACCTAAAATGTGACGGAGCC
CGATTTTCGAAAAACATTTTTTTCCGGCCGAAAATGCCGGAAATATGCCG
GAAAAACCAGTTTTTTGACATTTTTCGAATTTTCATCATTAGTTTTTTCT
GATTCTTTGCAGTAAGATGCGTATTCGCAATGCTCAAAACATGACCGAGT
TCGATTTTTTGAGAAAAATTTTTTTCCGGTCGAAAATGCCGGAAATATGC
CATGAATATGCCTTATATAAAATGTTCACCTCTGCTCTATCTTTTCAAGG
TCCTCGTTGCATTTTCTTACCCTTTGGCAATTCTTCGATTTTTATCTTAT
TATCACTGTTANTCATTGCATTTTCTTACCCTTTGGCAATTCTTCTATTT
TTATCTTATTATCATTGTTAGGTAGGTCCATTTAGCATGTGGCTTGTTTT
CTTCTTTTTTTGAATTTTCATTTTTTTCCAAAAATTTGAATTGATACAAA
CCGGTCCAACATTTCATCCAACATCAGAAAAAAGGCATGTTTGATTGAAA
TGTAGGATTGGTTTACCCTGGCCTTTATTCTGCAAAAACATTCCACAGCT
CCATTAAAACGCAGACAACTCATTCCAATTCTTATTCGACATTTTGAAGT
CAAAACATTGTAAATTCTCTGGTCATCAAAATGTTTTATTAAAAGTGAAG
ACATTGTAGTGTTTAATCGAACGATTAAGTTACGTCACGCGCTATCTTTT
GGTTTAATAGCGAGTTTATAGCGAGATTATGTATCTGGAATTCTCTACGG
CTACGGCTAAAGCAGCGAGGGAAATGGCGATTAAGGCAAGTAATGGCGGG
TGAAAGCAAGCTCGATATTTGACGTACGGCATTATGTCGACTTTGCTTAT
ACGGTGTTTGGGTGTTTTTCCCGTACAGAGCAAAGTAGACAACGACATGT
CGCCTTTGGTGACGACCTGCATGGGCAGCCCCGCAACCGTAGCCGTAGAA
TATCTCCGATACATAATCTCGCTTATGTATTTGGGGACGGTAAAGTGACT
GAAGCGACTTGAAATGACCCACAGTTCTGACCCCGAAAATCAATGACGGT
AAAAGTGCTGATTTACCGTCGTCCTCAGTTGGTCATGATCTAGTCAAATT
AGAACCTTACCGTCTCCGTCGCTGAAAAACACACATGCATAAACTCGGTA
ATGATTGGTTGAGTAACTGCAATCTTTATGCAAGCTCAGTGTTTTTGAAG
CAGCAATTCAGACCTCGAAAAATATAATGTCAATTTGGCTTTAAGAACAG
CCGAGTATCAATAAAAATTTACTGTCTATTATTGAAAGAAATGTACGCAA
ATGTTCCTGAAATGACATTTAAATAGAAGAGATGAATATGTTTTTTATAG
GTTTTTTCGCATTATATAATTTAAAATTTTCTATTTTTTGTCAAAAGAAA
TTTACGCAAATATCATTCCTGGTATGACATTTAAATAGAGAGATGAAAAT
GTTTTTTATAGGCTTTTCGCAATATATAATTTAAAAATGCATATGACAAC
TTCATCTTACGAAGCTAAGATAAATGAATAGGATTTTGACAGCGTTGACT
TACATATGAACCATTTTCAATTGACTAGTTCTAAAAATATACACTGTCAA
ACCGAAAAATATCAACGAATTGAATTTTAAAAACAAATCAGATTTTAGCA
AGTTTTGTTAAGAGCAGAAGCTTCTTGATTTATTAAATCGTTTTCAACGC
TAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAATATCGTTTTCGGACCGTAATGTACGAAGT
AAATAACAGGTACTCTATTATAAAAAGAAATTTTCTTTCTGTAAACAATC
CCCCTATATTGTTGGAAAATTGTAAATCGAGCTGACAATATATTGTGGAC
ACCTTTTCAATATATTGCCGGCACTAAGCAATATATCATCAATATATTGC
CTGACAATATATTGTGTAGTGTATGTAGCCCTTAAAGATTTTTGCTCTAA
GAGAAAACATCATTTTATACACTAACAGTACAAGTATTGGAGGAAAAAGA
GTTTCACATAACCTTTAAAGATCTTCAAGCCCGCTGTGACAAAAGTACAA
AAACTGAGAATTATGATTTTCAAACTAGCATCATGCGTACTGTTGACTAT
CTTTGTCACAGCTCAAGCGCAAAAGCAGTTTACGGCTATGTACAGGGTGA
TTGAGAACAAAACAGCAGTCAGTGACGACCATAACCCGTTCTTAAATGAG
ACTGTACATAGCATCATGCAATGTTTCATGAAGAGAATCGATCATTCTCA
TTTTGTTGAAGTCAAAACTGACGGAAAGATGCACCAATGTCGTTTCTATG
AAGCAATTAAACCTAGCTCCATTCGAAGGAGTCCTGAAGCGGGAATTGTT
TTGTATCAATACAGTGTAACAGCCAGTCTCTGTCAGGATCTTAACAGTGA
GGTGAACGGTGTCTTCCAACTAACTCTTGGTAGCGAAGAAGGTAGCCTGA
CCAAGGTGTACTGTGATCAGACCGAGAACGGAGGTGGCTGGACAACATTC
CAAAGACGCATAGATGGGTCTGTTGATTTCATCAGAAACTGGGAAGACTA
TAAGAATGGTTTTGGTGAGGCTGATGGGAATTATTGGCTTGGTTTGGAGA
AGTTACATCAAATCACACATCGATATGAAACAGTGTTGATCAGAGTTGAA
GCGACCACGAATGATGGATCTCATATTTTTGTTATTCATGAAGGATTCAA
AGTTAGCCCTGAATCAGACTTTTATAGATTCACAGCAGGCATTTTGACGG
ATGATGACAATTTATATGGGAGAGGCTGGAACGTTGTGAATAATTATCGT
TTTACGACCTATGATAAAGATAACGATAACTTATGGGTTGATAACTGTGC
TATTTCAACTAAAGGTGGAGGCTGGTTTAAGAGTTGTGCCTGGATAGATT
TTAATAGTCCTTATTCTCAACTACGTTGGCACCATTTTTCGAATGATATC
AAATCCATTAGTTTGGCGGTCAAAGTGAAACACTGACCTCGTAAAAGACA
TTATTTCGTGTATTTCCTAACCATTTGCTAACACAGCATTTTTAAAGAAA
AGGAAGAACAGTTTTTTCTCCTTTCGGCGCTGTGCGAGCAAAATTTTAAT
TGTATTTAAATTATTTAAGCATTGTTAATTTAAGGCTTTCTTTTTTGGAC
GGGTATGTATTACACCATTTATTCAACCAGTATTTATTTCCGAATTGTAT
TTGAATTATTTAAGTGTTAATTTATTAATTTATTTTATTTATTAATTGTT
AATTTAAGATTGATTCGTTGAATTGTTAAAAAAAATTTGTAGTGGTAGAA
GCAATCTAACGTCATTTTACTTCAAAAGTGCCCTGCGTTTCTCATATTGT
ACTTGCTAATGTCCGATAACTATTAAGTATCATTAAAAGTTTTGTGGGGC
CATTTCATTTTATATCCATACAGGAGGCTGGACGAACATTTCCAGGGGAT
AGCCCGATAAGAATTCCAGGGGGTAAAAGACTGATTTAAATAAGTCCACT
AGACCAGCGTCCGAGATTCAGAAAAGGCCTTAAAAATAGTGTTCGTAGGG
CACTCCTTAGATCAAGACAAATTTTTGATATTATGCTCCTAATAGGGTGT
GGAATTAACAAAAANTTGGCTTGGTTTGGAGAAGTTACATCAAATCACAC
ATCGATATGAAACAGTGTTGATCAGAGTTGAAGCGACCACGAATGATGGA
TCTCATACTTTTGTTATTCATGAAGGATTCAAAGTTAGCCCTGAATCAGA
CTTTTATAGATTGACAGCAGGCATTTTGACGGAAGGTGACTATTCATATG
GGAGAGGCTGGAACGTTGTGAATAATTATCGTTTTACGACCTATGATAAA
GATAACGATAACTATCTGGGTGGTAACTGTGCTATTTTAGCTAAAGGTGG
AGGCTGGTTTAAGAGTTGTGCCTGGATAGATTTTAATAGTCCTTATTCTC
AAATACGTTGGTTCCATTTTTCGAATGATATCAAATCCATTAGTTTGGCG
GTCAAAGTGAAAAACTGACCTTGTAAAAGACATTATTTTGTGTATTTCCT
AACCATTTGCTAACACAGCATTTTTAAAGAAAAGGAAGAACAGTTTTTTC
TCCTTTCGGCGCTGTGCAAGCAAAATTTTAATTGTATTTAAATTATTTAA
GCATTGTTAATTTAAGGCTTTCTTTTTTGGACGGGTATTTATAACACCAT
TTATTCAACCAGTATTTATTTCCGAATTTTATATAAATTATTTAAGTATT
GTTAATTTAAGGCTTTCTTTTTTGGACGGGTATTTATAACACCATTTATT
CAACCAGTATTCATTTCCGAATTGTATTTGAATTATTTAAGTGTTAATTT
AAGGCTTTCTTTTTTGGACGGGTATGTATTACACCATTTATTCAACTAGT
ATTTATTTCCAAATTGTATTTACATTATTTAAGTGTTAATTTATTAATTT
ATTTTATTTATTAATTGTTAATTTAAGATTGATTCGTTGAATTGTTAAAA
AAAATTTGTAATGGTAGAAGCAATCTAACGTCATTTTACTTCAAAAGTGC
CCTGCGTTTCTCATATTGTACTTGCTAATGTCCGATAACTATTACGTATC
ATTAAAAGTTTTGTGGGGCCATTTCATTTTATATCCATACAGGAGGTTGG
ACGAACATTTCCAGGGGATAGCCCGATAAGAATCCCAGGGGGTAAAAGAC
TGATTTAAATATGTCCACTAGACCAGCGTCCGAGATTCAGAAAAGGCCTT
AAAAATGGTTTTCGTAGGGCACCCCTTAGATCAAGACAAATTTTTGATAT
TATGCTCCTAATAGGGTGTGGAATTGACAAAACAATTTTCCCTTCGAATC
TCCTGCAGTTTTCGAATGAATCGATTTTTAGTTAATCGATAGAACTTATC
AAGGGTCCCCCTTNCAAAAAAATTTTCCCTTCGAATCTCCTGCAGTTTTC
GAATGAATCGATTTTTAGTTAATCGATAGAACTTATCAAGGGTCCCCCTT
TACTAACGGTTTTTTGAAGTCTGAAAATCAAATATCTGAGGCTACCAACG
GATTCAGCGTGAAAAGTAGATAAAGAAAATGGGGTTATTTGTTAAGTTTC
GTCCACCCGGTGCCGAGAAATGGCATTTTTAAGGCGAAAAATCGACGTTT
TTGGCGTTTTTCGATGACGTCAGCATTTTTCTGGGAGTATTTTCAGAAAA
AATCATTCCCACAGCTGGATAGCCCTGAATTAGTAGTACTCGTATTTTTT
TCTGTAAACCGACGTCCAAAATATTCTGACGAATGCCGTAAATTTGGCCT
TTTAATACCGAGAAACGGGTCATTTTACCGACAAATTCCGAAATACGAGT
CTACACCGGATTCTCGGGAGACACCCTTAACTTGACCAATTACTATTAAC
ATTTTTTCCCCTCATTTTCCTAGCCGACTCGTGAACAATATCGCAAAGTA
TTCATGATCGCGGCAAGTATTTGTGTAATTGGTGGAACGTTCTGTAATGT
TTTTGTGAGTGGAGAATTACAACCATGGAATGATATTTATCATGACGAAG
AAAATTTTAATGGTAGTGACGAGGAACAGGTTTTAATAAACTCGTCAAAT
AGTATCAATGATGATGAACTTGTTGATAATTATGTTAGGACGTAAAACTC
TTTTTAAATATAAGACATATCAAGGCCATTTCTTTTACTTTACAAACGAA
CATGTAAGTTTTCGTTGTAAAGTTTCTTGAATTCGGTTGACTTATCAAGT
CCATATTATAGTTATTTTACAAACGAGCTTGTAAGTTTTCTTTGTAAAGC
CTCATGAATTCGGTTGACTTATCAAGTCCATATTATAATTATTTTACAAA
CGAGCTTGTAAGTTTTCTTTGTGAAGCCTCATGAATTCGGTTGACTCATC
AAGTCCATATTATAGTTATTTTACAAACGAGCTTGTAAGTTTTCTTTGTA
AAGTCTCATGAATTCGGTTGAATTATCAAGGCAGTGACGAGGAACAAGTT
TTAATAAACTCGTCAAACAGTATCAATATGATGAACTTGTTGATAATTAT
GTTANAGGAACAAGTTTTAATAAACCCGTCAAACAGTATCAATATGATGA
ACTTGTTGATAATTATGTTAGTACGTTAATTTATTTTCAGATATAAGCTC
CTTATAACTTTGTCAGAGATAACACGTCATCTTTCTTTAATGAATATTTC
GGCCAACTGGCTTTTTTCAAAATAAAGCATTTAGCTCATTATAATGGAGG
CTTCATAACTAGAATTTTTCCGAATAATTAGTACAACTTTTCTGGTACCT
TCAGTTAACAATGCCTGTTCAAGTTATGGAGACGCCGCTATCATTTGCTA
GAATTTGATCAAATCTTTGTGTAGGGTATCTTTTAGAAACAGAATTTTCT
GAAAACTTTGGGATTTTAGTCCCATGTATTGTCCATTTTTCGATCCTCAG
CGATACTTTGACATCAATTATTGCCAAGGATAGTATAGCCCGACATGCGA
ATTGTGCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037855XLOC_037855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060173-exon-scaffold_336-1575043694:173729..173762TCONS_00060173-exon-scaffold_336-1575043694:173729..173762Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1575043694:172223..172254TCONS_00060173-exon-scaffold_336-1575043694:172223..172254Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1575043694:171836..171953TCONS_00060173-exon-scaffold_336-1575043694:171836..171953Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1575043694:171026..171155TCONS_00060173-exon-scaffold_336-1575043694:171026..171155Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1575043694:170147..170280TCONS_00060173-exon-scaffold_336-1575043694:170147..170280Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1575043694:168847..168957TCONS_00060173-exon-scaffold_336-1575043694:168847..168957Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1575043694:160852..161939TCONS_00060173-exon-scaffold_336-1575043694:160852..161939Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1510915933:173729..173762TCONS_00060173-exon-scaffold_336-1510915933:173729..173762Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1510915933:172223..172254TCONS_00060173-exon-scaffold_336-1510915933:172223..172254Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1510915933:171836..171953TCONS_00060173-exon-scaffold_336-1510915933:171836..171953Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1510915933:171026..171155TCONS_00060173-exon-scaffold_336-1510915933:171026..171155Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1510915933:170147..170280TCONS_00060173-exon-scaffold_336-1510915933:170147..170280Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1510915933:168847..168957TCONS_00060173-exon-scaffold_336-1510915933:168847..168957Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1510915933:160852..161939TCONS_00060173-exon-scaffold_336-1510915933:160852..161939Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1491911889:173729..173762TCONS_00060173-exon-scaffold_336-1491911889:173729..173762Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1491911889:172223..172254TCONS_00060173-exon-scaffold_336-1491911889:172223..172254Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1491911889:171836..171953TCONS_00060173-exon-scaffold_336-1491911889:171836..171953Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1491911889:171026..171155TCONS_00060173-exon-scaffold_336-1491911889:171026..171155Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1491911889:170147..170280TCONS_00060173-exon-scaffold_336-1491911889:170147..170280Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1491911889:168847..168957TCONS_00060173-exon-scaffold_336-1491911889:168847..168957Clytia hemisphaericaexon
TCONS_00060173-exon-scaffold_336-1491911889:160852..161939TCONS_00060173-exon-scaffold_336-1491911889:160852..161939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:160852..173762 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.340472	0.345022	0.27518	0.265513	0.0610635	0.0528124	0.15351	0.165969	1.15268	0.137447	0.253016	0.259257	2.40818	0.691873	0.0332328	0.892658	0.256509	0.424867	0.540714	0.303626	0.751852	0.475417	0.620639	0.508759	0.104942	0.115903	0.314634	0.54199	0.578275	0.718497
Blast
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BLAST of TCONS_00060173 vs. Swiss-Prot (Human)
Match: VGLU1 (Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.020e-42
Identity = 94/239 (39.33%), Postives = 136/239 (56.90%), Query Frame = 2 
Query:   47 PWSHILTSRPVWAIMIGLFSHCWVWYMLLTGLPSYFSEVLDFKLKNNGFLSALPYLSSFVVQQIGGWFADYLRKNWI-STTAARRLAGILAFYPSAGFLLLVSYAGCDQIALSVGYLVLAVTFITLNQIGLICSQVDIAPRYVGIIMGLANSAGTIAGCITPSVTGYFTNEHPTREQYRKVFMIAASICVIGGTFCNVFVSGELQPW---NDIYHDEENFNGSDEEQVLINSSNSINDD 751
            PW    TS PV+AI++  F   W +Y+LL   P+YF EV  F++   G +SALP+L   ++  IGG  AD+LR   I STT  R+L     F   A  LL+V Y+    +A+S  +LVLAV F      G   + +DIAPRY  I+MG++N  GT++G + P + G  T +H TRE+++ VF+IA+ +   G  F  VF SGE QPW    ++  ++  F G D+   L  S +S  +D
Sbjct:  294 PWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGLVSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKGVAIS--FLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMT-KHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPEEMSEEKCGFVGHDQ---LAGSDDSEMED 526
The following BLAST results are available for this feature:
BLAST of TCONS_00060173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU12.020e-4239.33Vesicular glutamate transporter 1 OS=Homo sapiens ... [more]
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