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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060157 ID=TCONS_00060157|Name=TCONS_00060157|organism=Clytia hemisphaerica|type=transcript|length=1395bp
CCTGCTGAGAAGATACGAGATGTATTCCTCTGTAGATAGTGCAAGGAAAC
GTTTTCAAGCAATGCTATTGTCCAAAATCATGACAAAAAATGTTTCCAGA
ATCCTGCCAGCAGAACTAAACATGGAAATAAAATTGTTCTCAATCGAAAG
GAATTGGAGCCCCTCAAAAAAGAGGCTGTACCACACTTGACCATCGCTCT
AGACATTGCCATCAATGACAAAGTTCTCAATCTGAAAAGTGGAGAAACAC
TAACACCAGGAAATTGTGCATCCAAATTGGCAAAGCAAATTCGTGAAAAG
ATTGACTCTGACGTTGCAGCCAATGAAATTAAAGAATTCGCAAATCACAT
TCAAGAGCTCCTTCTTCCAAGTGTGAACACTGATTTTTGCTCTGACGCTC
GTCAAATTGGTTGCACTAAATTCTCATTGGTTGCAACAAGCACTTCTGGG
AGGAATAAATTCAACAACATTATCAAATCGCTTAAGTTGAAGACAGACAG
ATACGGATTTGATATTTTGTACACCTTTCTCACAACGAAGATTTTTTCAC
TAATTCTAAAGTGGAAGAATGACCAATTGATTGCTACACCTAAAGTTGAC
TACCGTTCAGTCCAAATATCTCAAGACGAAGACAAAGTGCTTCGGTATGT
TAGTGGCTTTATTCCATTTGCCCTCAAAAAAAGGTTTCTTCGTGTGAAAG
AATCACCGTTGCGGAATGCTGCTCTCCAAGCAGTATCAGCTTGGTGCCTA
GAAGAGGAGGAAGCAGATAAAACTGACTTTTATGACTATACCTTGTCTTG
GACAAACAGAATAAACAGAGGAGGCCTAATGATCGTGAAAGaaagctttt
ttgttttcattagaAGAGTTGAACTTTCTGTTCGTGGTATTTTGAACCAG
ACTCTAATCAAAACATACAATGGTGAGGATTTGAGAGATACATTGTTCAA
TAAACTAATAAGTGACAGCCTTATAGAAAGCACCTGGGCTTCATTAAGCT
GCATGATTCTATCAAACAAATTGAGGGCAACTTTAAAAGAAATAATCCTA
ACGAAGTGGATCAATTTGCGAATTAGATCTTTTGTAACTGCATGGATTCA
AGCTGCAAAATCCAAACAAGGTGAAGAGAAACTATCAAGAAAGGGCGAAG
TATCTTTGAGAAAAGGTCTTGCTCAATAGCTTTTgagttttatgattttt
ttgtcttATTGTTATactaatatatttaaaaaagaatcttGTGTGTTCAG
CTATATATACAAATCAAAACCAAAGAGAAAGCCTTAGATCAGAAAACTTT
ACCATAACTTTGCCATAGGATGCTATGGAAATCGGAAACAACAGAATATA
AAACCtcattaaaattgaaaaatttttgtatCATTCAGAAGAGCT Run BLAST on NCBI protein sequence of TCONS_00060157-protein >TCONS_00060157-protein ID=TCONS_00060157-protein|Name=TCONS_00060157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MIVKESFFVFIRRVELSVRGILNQTLIKTYNGEDLRDTLFNKLISDSLIE
STWASLSCMILSNKLRATLKEIILTKWINLRIRSFVTAWIQAAKSKQGEE
KLSRKGEVSLRKGLAQ Run BLAST on NCBI transcript from alignment at scaffold_336:73298..75853+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060157 ID=TCONS_00060157|Name=TCONS_00060157|organism=Clytia hemisphaerica|type=transcript|length=2556bp|location=Sequence derived from alignment at scaffold_336:73298..75853+ (Clytia hemisphaerica)
CCTGCTGAGAAGATACGAGATGTATTCCTCTGTAGATAGTGCAAGGAAAC
GTTTTCAAGCAATGCTATTGTCCAAAATCATGACAAAAAATGTTTCCAGA
ATCCTGCCAGCAGAACTAAACATGGAAATAAAATTGGTGTGTATATAACT
CTGATTCTGAGTAAAACCCCAGATGTCAGATACTGATCAttgctgaaatt
ttgaaccCTGACAGGaccatgatttttttactttgacTGAAAATGGTACG
GTCAACTGCACTAACTTAGGACTTCATCTAGGCGTCATCTTTTTATCCAC
GTTTAAAAAACCGTACTGTAAACAGCCATTTAACTTGCAACACAGACTAA
ACTTGCAACAGCACCTTATAAACGTGTTTTCTCCTCATAGTttgctttat
tttcattcatttttttcaaactaaGAACTGATCACTCTATCTGACACAGT
TTTAGGTTTCCTAATTTGCCTTACTTTATAGTTTTTGAATacttttttgt
ctcttttttttAGTTCTCAATCGAAAGGAATTGGAGCCCCTCAAAAAAGA
GGCTGTACCACACTTGACCATCGCTCTAGATATTGCCATCAATGACAAAG
TTCTCAATCTGAAAAGTGGAGAAACACTAACACCAGGAAATTGTGCATCC
AAATTGGCAAAGCAAATTCGTGAAAAGATTGACTCTGACGTTGCAGCCAA
TGAAATTAAAGAATTCGCAAATCACATTCAAGAGCTCCTTCTTCCAAGTG
TGAACACTGATTTTTGCTCTGACGCTCGTCAAATTGGTTGCACTAAATTC
TCATTGGTTGCAACAAGCACTTCTGGGAGGAATAAATTCAACAACATTAT
CAAATCGCTTAAGTTGAAGACAGACAGATACGGATTTGATATTTTGTACA
CCTTTCTCACAACGAAGATTTTTTCACTAATTCTAAAGTGGAAGAATGAC
CAATTGATTGCTACACCTAAAGTTGACTACCGTTCAGTCCAAATATCTCA
AGACGAAGACAAAGTGCTTCGGTATGTTAGTGGCTTTATTCCATTTGCCC
TCAAAAAAAGGTTTCTTCGTGTCAAAGAATCACCGTTGCGGAATGCTGCT
CTCCAAGGAGTATCAGCTTGGTGCCTAGAAGAGGAGGAAGCAGATAAAAC
TGACTTTTATGACTATACCTTGTCTTGGACAAACAGAATAAAANTTTTTC
AAACTAAGAACTGATCACTCTATCTGACACAGTTTTAGGTTTCCTAATTT
GCCTTACTTTATAGTTTTTGAATACTTTTTTGTCTCCTTTATTTTAGTTC
TCAATCGAAAGGAATTGGAGCCCCTCAAAAAAGAGGCTGTACCACACTTG
ACCATCGCTCTAGACATTGCCATCAATGACAAAGTTCTCAATCTGAAAAG
TGGAGAAACACTAACACCAGGAAATTGTGCATCCAAATTGGCAAAGCAAA
TTCGTGAAAAGATTGACTCTGACGTTGCAGCCAATGAAATTAAAGAATTC
GCAAATCACATTCAAGAGCTCCTTCTTCCAAGTGTGAACACTGATTTTTG
CTCTGACGCTCGTCAAATTGGTTGCACTAAATTCTCATTGGTTGCAACAA
GCACTTCTGGGAGGAATAAATTCAACAACATTATCAAATCGCTTAAGTTG
AAGACAGACAGATACGGATTTGATATTTTGTACACCTTTCTCACAACGAA
GATTTTTTCACTAATTCTAAAGTGGAAGAATGACCAATTGATTGCTACAC
CTAAAGTTGACTACCGTTCAGTCCAAATATCTCAAGACGAAGACAAAGTG
CTTCGGTATGTTAGTGGCTTTATTCCATTTGCCCTCAAAAAAAGGTTTCT
TCGTGTGAAAGAATCACCGTTGCGGAATGCTGCTCTCCAAGCAGTATCAG
CTTGGTGCCTAGAAGAGGAGGAAGCAGATAAAACTGACTTTTATGACTAT
ACCTTGTCTTGGACAAACAGAATAAACAGAGGAGGCCTAATGATCGTGAA
AGaaagcttttttgttttcattagaAGAGTTGAACTTTCTGTTCGTGGTA
TTTTGAACCAGACTCTAATCAAAACATACAATGGTGAGGATTTGAGAGAT
ACATTGTTCAATAAACTAATAAGTGACAGCCTTATAGAAAGCACCTGGGC
TTCATTAAGCTGCATGATTCTATCAAACAAATTGAGGGCAACTTTAAAAG
AAATAATCCTAACGAAGTGGATCAATTTGCGAATTAGATCTTTTGTAACT
GCATGGATTCAAGCTGCAAAATCCAAACAAGGTGAAGAGAAACTATCAAG
AAAGGGCGAAGTATCTTTGAGAAAAGGTCTTGCTCAATAGCTTTTgagtt
ttatgatttttttgtcttATTGTTATactaatatatttaaaaaagaatct
tGTGTGTTCAGCTATATATACAAATCAAAACCAAAGAGAAAGCCTTAGAT
CAGAAAACTTTACCATAACTTTGCCATAGGATGCTATGGAAATCGGAAAC
AACAGAATATAAAACCtcattaaaattgaaaaatttttgtatCATTCAGA
AGAGCT Coding sequence (CDS) from alignment at scaffold_336:73298..75853+ >TCONS_00060157 ID=TCONS_00060157|Name=TCONS_00060157|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_336:73298..75853+ (Clytia hemisphaerica)
ATGATCGTGAAAGaaagcttttttgttttcattagaAGAGTTGAACTTTC
TGTTCGTGGTATTTTGAACCAGACTCTAATCAAAACATACAATGGTGAGG
ATTTGAGAGATACATTGTTCAATAAACTAATAAGTGACAGCCTTATAGAA
AGCACCTGGGCTTCATTAAGCTGCATGATTCTATCAAACAAATTGAGGGC
AACTTTAAAAGAAATAATCCTAACGAAGTGGATCAATTTGCGAATTAGAT
CTTTTGTAACTGCATGGATTCAAGCTGCAAAATCCAAACAAGGTGAAGAG
AAACTATCAAGAAAGGGCGAAGTATCTTTGAGAAAAGGTCTTGCTCAATA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060157-exon-scaffold_336-1491911889:73298..73433 | TCONS_00060157-exon-scaffold_336-1491911889:73298..73433 | Clytia hemisphaerica | exon |
| TCONS_00060157-exon-scaffold_336-1510915933:73298..73433 | TCONS_00060157-exon-scaffold_336-1510915933:73298..73433 | Clytia hemisphaerica | exon |
| TCONS_00060157-exon-scaffold_336-1575043694:73298..73433 | TCONS_00060157-exon-scaffold_336-1575043694:73298..73433 | Clytia hemisphaerica | exon |
| TCONS_00060157-exon-scaffold_336-1491911889:74595..75853 | TCONS_00060157-exon-scaffold_336-1491911889:74595..75853 | Clytia hemisphaerica | exon |
| TCONS_00060157-exon-scaffold_336-1510915933:74595..75853 | TCONS_00060157-exon-scaffold_336-1510915933:74595..75853 | Clytia hemisphaerica | exon |
| TCONS_00060157-exon-scaffold_336-1575043694:74595..75853 | TCONS_00060157-exon-scaffold_336-1575043694:74595..75853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_336 | supercontig | scaffold_336:73298..75853 + |
Blast
The following BLAST results are available for this feature:
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