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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060153 ID=TCONS_00060153|Name=TCONS_00060153|organism=Clytia hemisphaerica|type=transcript|length=493bp
GATTGATGAGAGCATTTACCAGGACGACAATTACATGTTGGCTGAATGGC
ATTTATATGCTTCGGGTCCAAACGAAAAAGAAGATAGCGCTAAATATTGG
GACGGCGGTGAAACAGGAAAAGAGAATGTAAGAAATGCAATTCAACCTGC
ATTGGATTGGACAGCAACGAGTCAAATTCAAACAGTCCTCTTGGCTTGGA
TGCCTATTGATAATAAGGATATGTCATTGGATCAATCTGAAGCAGAAAGC
TTTGCGAGTTACTTTGTAGGacaattgaaagaaaattCAATCCCATGGTC
GATGAACGTGCTGGATAATTTTTATGACACCGAagagaaaaaatggaaaa
aggaaGAAGAGTACTTAGGTGTTAATATCGATTTCGAAGCACTCTTGGAT
AAGATTAACCAATGACAGCTCCTGTACGATTCGTTTATATGGTAATTGCA
TATGTCatgaaattcttgaaaataatcaaaaatagataaaaac Run BLAST on NCBI protein sequence of TCONS_00060153-protein >TCONS_00060153-protein ID=TCONS_00060153-protein|Name=TCONS_00060153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
IDESIYQDDNYMLAEWHLYASGPNEKEDSAKYWDGGETGKENVRNAIQPA
LDWTATSQIQTVLLAWMPIDNKDMSLDQSEAESFASYFVGQLKENSIPWS
MNVLDNFYDTEEKKWKKEEEYLGVNIDFEALLDKINQ Run BLAST on NCBI transcript from alignment at scaffold_336:15270..17702+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060153 ID=TCONS_00060153|Name=TCONS_00060153|organism=Clytia hemisphaerica|type=transcript|length=2433bp|location=Sequence derived from alignment at scaffold_336:15270..17702+ (Clytia hemisphaerica)
GATTGATGAGAGCATTTACCAGGACGACAATTACATGTTGGCTGAATGGC
ATTTATATGCTTCGGGTCCAAACGAAAAAGAAGATAGCGCTAAATATTGG
GACGGCGGTGAAACAGGAAAAGAGAATGTAAGAAATGCAATTCAACCTGC
ATTGGATTGGACAGCAACGAGTCAAATTCAAACAGTCCTCTTGGCTTGGA
TGCCTATTGATAATAAGGATATGTCATTGGATCAATCTGAAGCAGAAAGC
TTTGCGAGTTACTTTGTAGGacaattgaaagaaaattgtaaGTAATACAA
TTTTCCTTGACATTCTAAATGGCCCAGCGCGCAGCGCAATGGGCCTTTAA
AACACAACTGGtcgaaaaaatttgactttgttGGGGTCTATGCGCGCAAA
TATCAATGGACGAttccaggctaaaatcgaactacctgactttctattgt
gcgcatgcgtaagaaaaaacCACACATAATTAATACCTTCAACTTATatg
gtcaaatctttctttcttaattAGTAGAAAAATGTTTAAAGTAATCAAAT
CTTTATTGCTCGCCCGACTCGAGTCTATACATTGAAAACATTCGCTTTTG
TTGTATGGCGATTCTGCAGCGGAAAAATATGGTGACAGTGCCAACACTGC
TGGACCTTTACgccgcttaggctttcttgttgATCTTTTGAATGTGAAGG
GTACAAAccttattttcataaattattttgagttcaACGACTGCCTTGTT
TTGAGACCattgccaaggtgattaaatcccttgAGTCTTCAAGTGATACT
TTAACAAATAGAGTAAAGTTCTTATGAAATCTTCTGGGAATCAATATTTT
GTAACCAAAGGTAAGTGTTTGTGACGTATGAAAAGGTCCGTTGCGGGATA
CCGGTACTGGCAAAATTAAGACGATTTTCAATCCTGGCAAACCAGTGaac
agtttttttaaattctaatttaatttgtcaataaaaaatttcaatcaaaa
aaccgcaaaaataaTTTACGGATCAGAATATGTTAACTGAACAGCTTCCA
TACATAAAAAGTAATTTTATATGTCAttggaacacccccttctcacatac
cgactgggaccccttcctactggaaaaattggtcaaaaatatcGTCCTCG
GTCGACAATTATACTCAAATTATCCCTGCTGAAAATAAACAcgtaagcaa
atcctcactgcaaaatgttttgttttcttttcctcaaatccccagccata
aaaaacatgggaatatcaatccccatggAGTTTTGGcctgttatttttac
ccccactggctcaTAAAATCCCagcaggtctgtgagaagggggtgttttg
gATTGGATGGATATGAAGTAATTTTTATCTACTCTCAGGTGCCGAATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcc
ccccccccccccggacgtTTATTCGGCACCTGAGAGTAAGTTTCGTGTGT
CAAAATACAAACCAGATGGGTGGctaaaagcaaaattttagtAATCATTA
CATTCTATTGTCACTCATCAACacaaaagaatttaatttaGAGATCTAAA
ATTCCCTAAAGGTCTCCAAAGTAAATGCTTTCCTTTAGCTAAAAAATGGT
AAATTCTCGAAAGGTATATGGATATATGGATTTGGGTatacaaaaacatc
aaattaaACATTCTATCGAAATCTTAAACTTTAatccccgtttatttgga
agctGAAAGTATTTTCTATAATTTTAGCAATCCCATGGTCGATGAACGTG
CTGGATAATTTTTATGACACCGAagagaaaaaatggaaaaaggaaGAAGA
GTACTTAGGTGTTAATATCGATTTCGAAGCACTCTTGGATAAGATTAACC
AATGACAGCTCCTGTACGATTCGTTTATATGGTAATTGCATATGTCatga
aattcttgaaaataatcaaaaatagataaaaac Coding sequence (CDS) from alignment at scaffold_336:15270..17702+ >TCONS_00060153 ID=TCONS_00060153|Name=TCONS_00060153|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_336:15270..17702+ (Clytia hemisphaerica)
ATTGATGAGAGCATTTACCAGGACGACAATTACATGTTGGCTGAATGGCA
TTTATATGCTTCGGGTCCAAACGAAAAAGAAGATAGCGCTAAATATTGGG
ACGGCGGTGAAACAGGAAAAGAGAATGTAAGAAATGCAATTCAACCTGCA
TTGGATTGGACAGCAACGAGTCAAATTCAAACAGTCCTCTTGGCTTGGAT
GCCTATTGATAATAAGGATATGTCATTGGATCAATCTGAAGCAGAAAGCT
TTGCGAGTTACTTTGTAGGacaattgaaagaaaattCAATCCCATGGTCG
ATGAACGTGCTGGATAATTTTTATGACACCGAagagaaaaaatggaaaaa
ggaaGAAGAGTACTTAGGTGTTAATATCGATTTCGAAGCACTCTTGGATA
AGATTAACCAATGAATTGATGAGAGCATTTACCAGGACGACAATTACATG
TTGGCTGAATGGCATTTATATGCTTCGGGTCCAAACGAAAAAGAAGATAG
CGCTAAATATTGGGACGGCGGTGAAACAGGAAAAGAGAATGTAAGAAATG
CAATTCAACCTGCATTGGATTGGACAGCAACGAGTCAAATTCAAACAGTC
CTCTTGGCTTGGATGCCTATTGATAATAAGGATATGTCATTGGATCAATC
TGAAGCAGAAAGCTTTGCGAGTTACTTTGTAGGacaattgaaagaaaatt
CAATCCCATGGTCGATGAACGTGCTGGATAATTTTTATGACACCGAagag
aaaaaatggaaaaaggaaGAAGAGTACTTAGGTGTTAATATCGATTTCGA
AGCACTCTTGGATAAGATTAACCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060153-exon-scaffold_336-1491911889:15270..15556 | TCONS_00060153-exon-scaffold_336-1491911889:15270..15556 | Clytia hemisphaerica | exon |
| TCONS_00060153-exon-scaffold_336-1510915933:15270..15556 | TCONS_00060153-exon-scaffold_336-1510915933:15270..15556 | Clytia hemisphaerica | exon |
| TCONS_00060153-exon-scaffold_336-1575043694:15270..15556 | TCONS_00060153-exon-scaffold_336-1575043694:15270..15556 | Clytia hemisphaerica | exon |
| TCONS_00060153-exon-scaffold_336-1491911889:17497..17702 | TCONS_00060153-exon-scaffold_336-1491911889:17497..17702 | Clytia hemisphaerica | exon |
| TCONS_00060153-exon-scaffold_336-1510915933:17497..17702 | TCONS_00060153-exon-scaffold_336-1510915933:17497..17702 | Clytia hemisphaerica | exon |
| TCONS_00060153-exon-scaffold_336-1575043694:17497..17702 | TCONS_00060153-exon-scaffold_336-1575043694:17497..17702 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_336 | supercontig | scaffold_336:15270..17702 + |
Blast
The following BLAST results are available for this feature:
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